Wall clock time and date at job start Tue Mar 31 2020 11:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99775 * 2 1 4 4 C 1.39710 * 119.99968 * 180.02562 * 2 1 3 5 5 C 1.39022 * 120.00034 * 174.29715 * 4 2 1 6 6 C 1.38202 * 120.21642 * 179.97438 * 5 4 2 7 7 C 1.38032 * 120.22942 * 359.71783 * 6 5 4 8 8 C 1.39576 * 120.00083 * 0.55581 * 7 6 5 9 9 C 1.47860 * 120.10645 * 179.72338 * 8 7 6 10 10 O 1.21558 * 119.99905 * 179.72562 * 9 8 7 11 11 N 1.34775 * 120.00183 * 359.72272 * 9 8 7 12 12 C 1.46507 * 120.00031 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46850 * 180.02562 * 12 11 9 14 14 H 1.08998 * 110.64091 * 51.86364 * 13 12 11 15 15 C 1.55157 * 110.71560 * 175.00040 * 13 12 11 16 16 C 1.54912 * 101.61364 * 154.02465 * 15 13 12 17 17 N 1.47467 * 104.81092 * 323.04224 * 16 15 13 18 18 C 1.36943 * 125.62699 * 204.14310 * 17 16 15 19 19 H 1.08000 * 119.99805 * 179.91607 * 18 17 16 20 20 C 1.38809 * 119.99988 * 359.91342 * 18 17 16 21 21 N 1.31617 * 120.00030 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47178 * 90.00458 * 22 20 18 24 24 H 1.48500 * 109.47418 * 210.00112 * 22 20 18 25 25 H 1.48505 * 109.47305 * 330.00391 * 22 20 18 26 26 C 1.47018 * 108.72231 * 24.07469 * 17 16 15 27 27 C 1.38639 * 120.00407 * 354.27004 * 4 2 1 28 28 H 1.09001 * 109.47274 * 185.05733 * 1 2 3 29 29 H 1.09001 * 109.46859 * 305.04936 * 1 2 3 30 30 H 1.08997 * 109.47365 * 65.05385 * 1 2 3 31 31 H 1.09007 * 109.47517 * 270.00188 * 3 2 1 32 32 H 1.08998 * 109.47531 * 30.00681 * 3 2 1 33 33 H 1.09005 * 109.47277 * 150.00715 * 3 2 1 34 34 H 1.08001 * 119.89591 * 359.95088 * 5 4 2 35 35 H 1.07998 * 119.88757 * 179.97438 * 6 5 4 36 36 H 1.07993 * 119.99999 * 180.30562 * 7 6 5 37 37 H 0.96996 * 120.00039 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46753 * 60.00226 * 12 11 9 39 39 H 1.08995 * 109.46825 * 300.00543 * 12 11 9 40 40 H 1.08995 * 111.00686 * 272.11510 * 15 13 12 41 41 H 1.09001 * 111.00511 * 35.93567 * 15 13 12 42 42 H 1.09002 * 110.36377 * 81.85219 * 16 15 13 43 43 H 1.09004 * 110.36468 * 204.16827 * 16 15 13 44 44 H 0.97010 * 119.99864 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.87536 * 239.55808 * 26 17 16 46 46 H 1.08996 * 109.88294 * 118.39356 * 26 17 16 47 47 H 1.07994 * 120.10979 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5486 -1.2129 -0.1202 6 6 4.2441 -2.4071 -0.1207 7 6 3.5690 -3.6046 0.0034 8 6 2.1780 -3.6129 0.1183 9 6 1.4518 -4.8946 0.2452 10 8 0.2408 -4.8993 0.3502 11 7 2.1326 -6.0578 0.2444 12 6 1.4130 -7.3278 0.3696 13 6 2.4131 -8.4854 0.3417 14 1 3.2064 -8.3255 1.0719 15 6 1.6954 -9.8370 0.5978 16 6 2.6430 -10.8333 -0.1157 17 7 3.1107 -10.1152 -1.3158 18 6 3.5691 -10.6990 -2.4666 19 1 3.8891 -10.0831 -3.2941 20 6 3.6223 -12.0822 -2.5697 21 7 3.2318 -12.8328 -1.5614 22 14 4.2469 -12.8784 -4.1398 23 1 5.7153 -13.0775 -4.0436 24 1 3.5806 -14.1922 -4.3275 25 1 3.9413 -11.9986 -5.2964 26 6 3.0020 -8.6694 -1.0728 27 6 1.4756 -2.4077 0.1188 28 1 -0.3634 -1.0237 0.0906 29 1 -0.3633 0.5902 0.8413 30 1 -0.3634 0.4334 -0.9317 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1384 0.5137 34 1 4.0828 -0.2789 -0.2134 35 1 5.3200 -2.4032 -0.2144 36 1 4.1166 -4.5354 0.0075 37 1 3.0990 -6.0541 0.1610 38 1 0.7130 -7.4319 -0.4593 39 1 0.8655 -7.3437 1.3119 40 1 1.6350 -10.0512 1.6648 41 1 0.7049 -9.8458 0.1429 42 1 3.4856 -11.0834 0.5290 43 1 2.1008 -11.7353 -0.3996 44 1 3.2687 -13.7995 -1.6336 45 1 2.3395 -8.2182 -1.8117 46 1 3.9886 -8.2092 -1.1264 47 1 0.3997 -2.4075 0.2119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028952390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:56 Heat of formation + Delta-G solvation = 10.067904 kcal Electronic energy + Delta-G solvation = -25754.060920 eV Core-core repulsion = 22129.870528 eV Total energy + Delta-G solvation = -3624.190392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32764 -40.03123 -39.16468 -37.00842 -36.10018 -34.34264 -32.43239 -31.67794 -30.96756 -29.80580 -29.07026 -27.33231 -25.72793 -25.58482 -23.85045 -22.39302 -22.07211 -21.33094 -20.79386 -19.18961 -18.78402 -17.43531 -17.33723 -16.79550 -16.62875 -16.46796 -16.27478 -16.03646 -15.82812 -15.55659 -14.94218 -14.73300 -14.55336 -14.36930 -14.26251 -13.54619 -13.49967 -13.37926 -13.32410 -13.16602 -13.11507 -12.88493 -12.80571 -12.68611 -12.51546 -12.01158 -11.96272 -11.85883 -11.82164 -11.58849 -11.37744 -10.98722 -10.86140 -10.73205 -10.20615 -9.86654 -8.87131 -8.25651 -7.76792 -5.20821 -0.08371 0.58432 1.46810 1.48648 1.57399 1.89113 2.05037 2.30222 2.50162 2.96880 3.32608 3.60176 3.69633 3.82173 3.88320 3.97358 4.07477 4.07701 4.27260 4.32656 4.42262 4.45746 4.50798 4.57738 4.65590 4.65740 4.71647 4.77733 4.81207 4.86381 4.91808 4.92030 5.01573 5.05613 5.13666 5.23125 5.32087 5.40528 5.44574 5.48888 5.53502 5.67315 5.79701 5.83822 6.29931 6.32764 6.48044 6.51765 7.12087 7.15645 7.79902 8.43398 9.25121 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.002275 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.373299 B =12302.479115 C =12882.514477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.645 5.645 3 C 0.090 3.910 4 C 0.197 3.803 5 C -0.172 4.172 6 C -0.075 4.075 7 C -0.147 4.147 8 C -0.103 4.103 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.709 5.709 12 C 0.143 3.857 13 C -0.093 4.093 14 H 0.098 0.902 15 C -0.123 4.123 16 C 0.152 3.848 17 N -0.628 5.628 18 C -0.238 4.238 19 H 0.079 0.921 20 C -0.069 4.069 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.137 3.863 27 C -0.162 4.162 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.139 0.861 37 H 0.413 0.587 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.061 0.939 42 H -0.008 1.008 43 H 0.071 0.929 44 H 0.247 0.753 45 H 0.019 0.981 46 H 0.030 0.970 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 28.780 6.510 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.357 5.357 3 C -0.052 4.052 4 C 0.095 3.905 5 C -0.195 4.195 6 C -0.093 4.093 7 C -0.168 4.168 8 C -0.107 4.107 9 C 0.342 3.658 10 O -0.465 6.465 11 N -0.361 5.361 12 C 0.019 3.981 13 C -0.112 4.112 14 H 0.117 0.883 15 C -0.162 4.162 16 C 0.027 3.973 17 N -0.355 5.355 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.599 5.599 22 Si 0.809 3.191 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.012 3.988 27 C -0.185 4.185 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.010 0.990 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.037 0.963 46 H 0.048 0.952 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.511 28.758 6.487 29.485 hybrid contribution 0.484 -0.983 -0.889 1.411 sum -0.027 27.775 5.598 28.333 Atomic orbital electron populations 1.21811 0.79044 1.02998 1.02121 1.46540 1.05631 1.03244 1.80297 1.21790 0.97579 0.83917 1.01927 1.17865 0.92020 0.85797 0.94810 1.21193 0.91608 1.00134 1.06551 1.21209 1.01274 0.90784 0.96071 1.21322 0.91983 1.00049 1.03458 1.19616 0.94614 0.91753 1.04724 1.18711 0.86703 0.84748 0.75647 1.90721 1.15544 1.88255 1.51994 1.45880 1.11654 1.05206 1.73316 1.21248 0.93989 0.80984 1.01834 1.22281 0.97929 0.94042 0.96986 0.88339 1.22853 0.98396 0.93960 1.00953 1.21746 0.94012 0.95633 0.85922 1.44840 1.75621 1.01381 1.13630 1.19448 1.34638 0.90362 0.92307 0.90294 1.25641 1.02676 0.96656 1.01191 1.70058 1.54456 1.03675 1.31671 0.85049 0.77548 0.77497 0.79055 1.21206 1.21997 1.19597 1.21508 0.97436 0.85057 0.94789 1.20795 1.00191 0.90627 1.06887 0.91528 0.91043 0.92004 0.92769 0.90034 0.90477 0.83201 0.82435 0.84306 0.74933 0.92836 0.90500 0.89126 0.91978 0.98991 0.91110 0.94346 0.96335 0.95166 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.62 127.77 1.36 2.46 16 2 N -0.65 -9.77 3.41 -747.40 -2.55 -12.32 16 3 C 0.09 0.76 10.09 127.77 1.29 2.05 16 4 C 0.20 3.79 6.53 38.17 0.25 4.04 16 5 C -0.17 -2.63 9.16 22.45 0.21 -2.42 16 6 C -0.08 -1.12 10.02 22.21 0.22 -0.90 16 7 C -0.15 -2.79 9.54 22.54 0.22 -2.58 16 8 C -0.10 -2.57 5.87 -20.11 -0.12 -2.69 16 9 C 0.55 16.49 7.77 86.79 0.67 17.16 16 10 O -0.58 -21.65 16.35 -3.90 -0.06 -21.72 16 11 N -0.71 -18.59 5.42 -465.95 -2.53 -21.12 16 12 C 0.14 4.18 5.02 86.38 0.43 4.62 16 13 C -0.09 -2.97 2.95 -9.61 -0.03 -3.00 16 14 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 15 C -0.12 -4.45 6.53 31.99 0.21 -4.24 16 16 C 0.15 7.47 5.89 86.85 0.51 7.98 16 17 N -0.63 -32.55 3.40 -691.89 -2.35 -34.90 16 18 C -0.24 -13.53 10.27 84.03 0.86 -12.66 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 21 N -0.95 -56.99 10.09 21.65 0.22 -56.78 16 22 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.14 5.52 6.76 86.73 0.59 6.10 16 27 C -0.16 -3.91 8.86 22.67 0.20 -3.71 16 28 H 0.07 1.09 5.31 -2.39 -0.01 1.08 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.08 0.45 8.07 -2.39 -0.02 0.43 16 33 H 0.08 0.51 6.45 -2.38 -0.02 0.50 16 34 H 0.15 1.46 6.29 -2.91 -0.02 1.44 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.14 2.11 6.40 -2.91 -0.02 2.10 16 37 H 0.41 8.81 6.50 -92.71 -0.60 8.21 16 38 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.07 4.01 5.88 -2.38 -0.01 3.99 16 44 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 45 H 0.02 0.77 7.70 -2.39 -0.02 0.76 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.12 3.21 5.33 -2.91 -0.02 3.19 16 Total: -1.00 -74.41 374.16 2.47 -71.94 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.38 Total: 18.07 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 7.34 Total: 8.71 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -7.21 Total: -125.12 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -74.41 2.47 -71.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028952390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.008 kcal (2) G-P(sol) polarization free energy of solvation -74.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds