Wall clock time and date at job start Tue Mar 31 2020 11:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46895 * 110.99909 * 2 1 4 4 C 1.46905 * 111.00064 * 123.95675 * 2 1 3 5 5 C 1.52999 * 109.46987 * 66.04531 * 4 2 1 6 6 C 1.50699 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.37977 * 120.07351 * 98.59602 * 6 5 4 8 8 C 1.38337 * 120.14773 * 179.97438 * 7 6 5 9 9 C 1.38386 * 120.29303 * 0.02891 * 8 7 6 10 10 C 1.37946 * 120.14268 * 359.97438 * 9 8 7 11 11 C 1.39560 * 120.07521 * 278.32725 * 6 5 4 12 12 C 1.47850 * 120.14387 * 359.97438 * 11 6 5 13 13 O 1.21558 * 119.99836 * 5.43956 * 12 11 6 14 14 N 1.34768 * 120.00019 * 185.44257 * 12 11 6 15 15 C 1.46500 * 119.99940 * 180.02562 * 14 12 11 16 16 C 1.53948 * 113.73990 * 253.73895 * 15 14 12 17 17 N 1.47816 * 86.03831 * 222.08447 * 16 15 14 18 18 C 1.36932 * 134.46069 * 204.64712 * 17 16 15 19 19 H 1.08001 * 120.00474 * 183.31588 * 18 17 16 20 20 C 1.38815 * 119.99892 * 3.31448 * 18 17 16 21 21 N 1.31622 * 119.99903 * 353.02347 * 20 18 17 22 22 Si 1.86803 * 120.00091 * 173.02138 * 20 18 17 23 23 H 1.48495 * 109.46899 * 94.98280 * 22 20 18 24 24 H 1.48497 * 109.47028 * 214.97986 * 22 20 18 25 25 H 1.48503 * 109.47129 * 334.98344 * 22 20 18 26 26 C 1.47586 * 91.04727 * 24.54740 * 17 16 15 27 27 H 1.09008 * 109.47258 * 296.04111 * 1 2 3 28 28 H 1.09001 * 109.47531 * 56.04286 * 1 2 3 29 29 H 1.09000 * 109.47166 * 176.04541 * 1 2 3 30 30 H 1.09006 * 109.47044 * 183.95648 * 3 2 1 31 31 H 1.09001 * 109.47443 * 303.95755 * 3 2 1 32 32 H 1.09000 * 109.47248 * 63.96046 * 3 2 1 33 33 H 1.08995 * 109.46770 * 306.04339 * 4 2 1 34 34 H 1.09004 * 109.46919 * 186.04665 * 4 2 1 35 35 H 1.08996 * 109.46997 * 60.00243 * 5 4 2 36 36 H 1.08991 * 109.47247 * 300.00172 * 5 4 2 37 37 H 1.08000 * 119.92812 * 0.02562 * 7 6 5 38 38 H 1.07996 * 119.86073 * 180.02562 * 8 7 6 39 39 H 1.07995 * 119.93197 * 179.97438 * 9 8 7 40 40 H 1.07995 * 120.07331 * 180.02562 * 10 9 8 41 41 H 0.97003 * 120.00469 * 359.97438 * 14 12 11 42 42 H 1.08993 * 112.94829 * 25.32779 * 15 14 12 43 43 H 1.08996 * 113.76797 * 336.34626 * 16 15 14 44 44 H 1.08996 * 113.77031 * 107.75023 * 16 15 14 45 45 H 0.96994 * 119.99629 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.76844 * 221.15238 * 26 17 16 47 47 H 1.08997 * 113.76817 * 89.76217 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2427 0.9702 6 6 2.1720 -3.0286 2.1369 7 6 1.3454 -3.3575 3.1915 8 6 1.8399 -4.0794 4.2630 9 6 3.1655 -4.4759 4.2852 10 6 4.0027 -4.1536 3.2373 11 6 3.5085 -3.4303 2.1504 12 6 4.3984 -3.0870 1.0207 13 8 3.9951 -2.3707 0.1252 14 7 5.6566 -3.5683 0.9837 15 6 6.5386 -3.2277 -0.1354 16 6 6.7638 -4.3876 -1.1223 17 7 8.1805 -3.9661 -1.1351 18 6 9.2116 -4.0954 -2.0268 19 1 10.1963 -3.7336 -1.7700 20 6 8.9913 -4.6916 -3.2609 21 7 7.8307 -5.2549 -3.5218 22 14 10.3419 -4.6943 -4.5514 23 1 11.1025 -5.9670 -4.4691 24 1 9.7369 -4.5656 -5.9014 25 1 11.2601 -3.5524 -4.3094 26 6 8.0368 -3.3479 0.1974 27 1 -0.3634 0.4512 0.9234 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0709 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5611 -0.3873 2.0627 34 1 3.0797 -0.6611 1.1756 35 1 2.0658 -2.6213 0.0451 36 1 0.5472 -2.3475 0.9322 37 1 0.3097 -3.0514 3.1802 38 1 1.1886 -4.3346 5.0858 39 1 3.5455 -5.0389 5.1248 40 1 5.0369 -4.4640 3.2556 41 1 5.9787 -4.1397 1.6984 42 1 6.2701 -2.2876 -0.6172 43 1 6.6028 -5.3733 -0.6858 44 1 6.2565 -4.2561 -2.0780 45 1 7.6767 -5.6712 -4.3842 46 1 8.5439 -2.3879 0.2933 47 1 8.2506 -4.0275 1.0223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030737321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:42 Heat of formation + Delta-G solvation = 59.425439 kcal Electronic energy + Delta-G solvation = -26566.786410 eV Core-core repulsion = 22944.736322 eV Total energy + Delta-G solvation = -3622.050089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40287 -38.62676 -37.47688 -37.22920 -33.89116 -32.82588 -31.99185 -30.92323 -28.93020 -27.61062 -27.38706 -24.89183 -24.80741 -23.91851 -22.86168 -21.75602 -20.75684 -20.23674 -19.50110 -17.53931 -16.78193 -16.19525 -15.90015 -15.57440 -15.28833 -14.99734 -14.86882 -14.77551 -14.70149 -14.27714 -13.78878 -13.60717 -13.03948 -12.98388 -12.90871 -12.60105 -12.40115 -11.94451 -11.91113 -11.74815 -11.65370 -11.53849 -11.43960 -11.36010 -11.07891 -10.89975 -10.79313 -10.65438 -10.33301 -10.02986 -9.56433 -9.25941 -9.09774 -8.86329 -8.74267 -8.38144 -8.27208 -6.91740 -5.76948 -3.09656 0.82191 1.20444 3.03530 3.39288 3.44708 3.48185 3.51447 3.80896 4.00231 4.46652 4.64495 4.72960 4.76080 4.93055 5.06497 5.12662 5.15773 5.21567 5.29980 5.31220 5.38104 5.48915 5.50792 5.56747 5.59012 5.62986 5.72436 5.76758 5.85289 5.89539 6.01722 6.10421 6.17522 6.20911 6.26935 6.29162 6.43177 6.54619 6.60682 6.76956 6.82092 7.06598 7.10439 7.25423 7.39516 7.57305 7.90444 7.97565 8.58345 9.03565 9.70351 10.57045 11.40126 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.003229 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.124898 B = 8669.575803 C =10128.889780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.028 3.972 4 C 0.077 3.923 5 C -0.084 4.084 6 C -0.023 4.023 7 C -0.129 4.129 8 C -0.098 4.098 9 C -0.134 4.134 10 C -0.084 4.084 11 C -0.127 4.127 12 C 0.546 3.454 13 O -0.518 6.518 14 N -0.711 5.711 15 C 0.095 3.905 16 C 0.154 3.846 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.112 3.888 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.394 0.606 42 H 0.112 0.888 43 H 0.028 0.972 44 H 0.076 0.924 45 H 0.255 0.745 46 H 0.050 0.950 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 6.147 16.977 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.120 4.120 4 C -0.051 4.051 5 C -0.121 4.121 6 C -0.025 4.025 7 C -0.147 4.147 8 C -0.116 4.116 9 C -0.152 4.152 10 C -0.103 4.103 11 C -0.130 4.130 12 C 0.333 3.667 13 O -0.396 6.396 14 N -0.362 5.362 15 C -0.010 4.010 16 C 0.028 3.972 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.015 4.015 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.228 0.772 42 H 0.130 0.870 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.106 6.362 15.545 22.590 hybrid contribution 0.645 -0.243 0.581 0.902 sum -14.461 6.119 16.126 22.508 Atomic orbital electron populations 1.22444 0.88123 1.02203 0.99907 1.61849 1.07186 1.13539 1.43740 1.22345 1.01256 0.88654 0.99784 1.21959 1.01212 0.92263 0.89642 1.20816 0.99405 0.93988 0.97931 1.19993 0.92045 0.95037 0.95386 1.21041 0.99824 1.00047 0.93825 1.21293 0.95607 0.96781 0.97924 1.21073 0.93922 1.01266 0.98909 1.21355 0.99870 0.96103 0.92990 1.20013 0.94637 1.02383 0.95995 1.18283 0.82032 0.80635 0.85734 1.90795 1.73578 1.36834 1.38397 1.46093 1.12732 1.51311 1.26076 1.23868 0.88170 1.01563 0.87407 1.22725 0.85008 0.92623 0.96889 1.45757 1.08698 1.64826 1.14054 1.18975 0.88792 1.34275 0.93428 0.90096 1.24818 0.97360 1.00154 0.97820 1.69844 1.22735 1.40799 1.22896 0.86104 0.80640 0.77650 0.81358 1.21675 1.21497 1.20485 1.22866 0.92157 0.96573 0.89881 0.96208 0.91668 0.91206 0.91096 0.91571 0.96257 0.96218 0.89664 0.86882 0.92167 0.85749 0.85863 0.85616 0.85509 0.77183 0.86988 0.95453 0.90542 0.93530 0.93221 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.06 0.56 0.78 16 2 N -0.54 -7.00 5.02 -251.26 -1.26 -8.26 16 3 C 0.03 0.32 9.57 60.06 0.57 0.89 16 4 C 0.08 1.00 4.47 -3.82 -0.02 0.99 16 5 C -0.08 -1.09 4.53 -27.88 -0.13 -1.22 16 6 C -0.02 -0.28 5.17 -104.23 -0.54 -0.82 16 7 C -0.13 -1.27 9.66 -39.64 -0.38 -1.66 16 8 C -0.10 -0.84 10.04 -39.49 -0.40 -1.24 16 9 C -0.13 -1.19 10.03 -39.63 -0.40 -1.59 16 10 C -0.08 -0.89 9.53 -39.18 -0.37 -1.26 16 11 C -0.13 -1.66 5.87 -104.96 -0.62 -2.28 16 12 C 0.55 8.72 7.64 -12.33 -0.09 8.62 16 13 O -0.52 -9.73 11.21 5.31 0.06 -9.67 16 14 N -0.71 -11.09 5.32 -56.28 -0.30 -11.39 16 15 C 0.09 1.84 4.40 -70.13 -0.31 1.54 16 16 C 0.15 3.72 7.34 -2.83 -0.02 3.70 16 17 N -0.61 -15.66 3.70 -177.85 -0.66 -16.32 16 18 C -0.23 -6.43 10.69 -15.06 -0.16 -6.59 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 21 N -0.92 -27.65 11.42 55.49 0.63 -27.02 16 22 Si 0.91 22.31 29.56 -169.99 -5.02 17.28 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.11 2.24 8.69 -2.96 -0.03 2.22 16 27 H 0.02 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.07 0.69 6.47 -51.93 -0.34 0.35 16 30 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.02 0.24 8.12 -51.93 -0.42 -0.19 16 34 H 0.09 1.30 6.49 -51.93 -0.34 0.96 16 35 H 0.11 1.83 5.96 -51.93 -0.31 1.52 16 36 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 37 H 0.12 0.98 8.05 -52.49 -0.42 0.56 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.11 6.45 -52.49 -0.34 0.77 16 41 H 0.39 5.05 6.78 -40.82 -0.28 4.77 16 42 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 2.10 7.18 -51.93 -0.37 1.73 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -33.08 376.73 -10.60 -43.68 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.31 Total: 4.17 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.42 Total: 1.85 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -1.59 Total: -62.98 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.06 Total: -9.67 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.08 -10.60 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030737321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.105 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds