Wall clock time and date at job start Tue Mar 31 2020 11:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46895 * 110.99909 * 2 1 4 4 C 1.46905 * 111.00064 * 123.95675 * 2 1 3 5 5 C 1.52999 * 109.46987 * 66.04531 * 4 2 1 6 6 C 1.50699 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.37977 * 120.07351 * 98.59602 * 6 5 4 8 8 C 1.38337 * 120.14773 * 179.97438 * 7 6 5 9 9 C 1.38386 * 120.29303 * 0.02891 * 8 7 6 10 10 C 1.37946 * 120.14268 * 359.97438 * 9 8 7 11 11 C 1.39560 * 120.07521 * 278.32725 * 6 5 4 12 12 C 1.47850 * 120.14387 * 359.97438 * 11 6 5 13 13 O 1.21558 * 119.99836 * 5.43956 * 12 11 6 14 14 N 1.34768 * 120.00019 * 185.44257 * 12 11 6 15 15 C 1.46500 * 119.99940 * 180.02562 * 14 12 11 16 16 C 1.53948 * 113.73990 * 253.73895 * 15 14 12 17 17 N 1.47816 * 86.03831 * 222.08447 * 16 15 14 18 18 C 1.36932 * 134.46069 * 204.64712 * 17 16 15 19 19 H 1.08001 * 120.00474 * 183.31588 * 18 17 16 20 20 C 1.38815 * 119.99892 * 3.31448 * 18 17 16 21 21 N 1.31622 * 119.99903 * 353.02347 * 20 18 17 22 22 Si 1.86803 * 120.00091 * 173.02138 * 20 18 17 23 23 H 1.48495 * 109.46899 * 94.98280 * 22 20 18 24 24 H 1.48497 * 109.47028 * 214.97986 * 22 20 18 25 25 H 1.48503 * 109.47129 * 334.98344 * 22 20 18 26 26 C 1.47586 * 91.04727 * 24.54740 * 17 16 15 27 27 H 1.09008 * 109.47258 * 296.04111 * 1 2 3 28 28 H 1.09001 * 109.47531 * 56.04286 * 1 2 3 29 29 H 1.09000 * 109.47166 * 176.04541 * 1 2 3 30 30 H 1.09006 * 109.47044 * 183.95648 * 3 2 1 31 31 H 1.09001 * 109.47443 * 303.95755 * 3 2 1 32 32 H 1.09000 * 109.47248 * 63.96046 * 3 2 1 33 33 H 1.08995 * 109.46770 * 306.04339 * 4 2 1 34 34 H 1.09004 * 109.46919 * 186.04665 * 4 2 1 35 35 H 1.08996 * 109.46997 * 60.00243 * 5 4 2 36 36 H 1.08991 * 109.47247 * 300.00172 * 5 4 2 37 37 H 1.08000 * 119.92812 * 0.02562 * 7 6 5 38 38 H 1.07996 * 119.86073 * 180.02562 * 8 7 6 39 39 H 1.07995 * 119.93197 * 179.97438 * 9 8 7 40 40 H 1.07995 * 120.07331 * 180.02562 * 10 9 8 41 41 H 0.97003 * 120.00469 * 359.97438 * 14 12 11 42 42 H 1.08993 * 112.94829 * 25.32779 * 15 14 12 43 43 H 1.08996 * 113.76797 * 336.34626 * 16 15 14 44 44 H 1.08996 * 113.77031 * 107.75023 * 16 15 14 45 45 H 0.96994 * 119.99629 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.76844 * 221.15238 * 26 17 16 47 47 H 1.08997 * 113.76817 * 89.76217 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6314 -2.2427 0.9702 6 6 2.1720 -3.0286 2.1369 7 6 1.3454 -3.3575 3.1915 8 6 1.8399 -4.0794 4.2630 9 6 3.1655 -4.4759 4.2852 10 6 4.0027 -4.1536 3.2373 11 6 3.5085 -3.4303 2.1504 12 6 4.3984 -3.0870 1.0207 13 8 3.9951 -2.3707 0.1252 14 7 5.6566 -3.5683 0.9837 15 6 6.5386 -3.2277 -0.1354 16 6 6.7638 -4.3876 -1.1223 17 7 8.1805 -3.9661 -1.1351 18 6 9.2116 -4.0954 -2.0268 19 1 10.1963 -3.7336 -1.7700 20 6 8.9913 -4.6916 -3.2609 21 7 7.8307 -5.2549 -3.5218 22 14 10.3419 -4.6943 -4.5514 23 1 11.1025 -5.9670 -4.4691 24 1 9.7369 -4.5656 -5.9014 25 1 11.2601 -3.5524 -4.3094 26 6 8.0368 -3.3479 0.1974 27 1 -0.3634 0.4512 0.9234 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0709 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5611 -0.3873 2.0627 34 1 3.0797 -0.6611 1.1756 35 1 2.0658 -2.6213 0.0451 36 1 0.5472 -2.3475 0.9322 37 1 0.3097 -3.0514 3.1802 38 1 1.1886 -4.3346 5.0858 39 1 3.5455 -5.0389 5.1248 40 1 5.0369 -4.4640 3.2556 41 1 5.9787 -4.1397 1.6984 42 1 6.2701 -2.2876 -0.6172 43 1 6.6028 -5.3733 -0.6858 44 1 6.2565 -4.2561 -2.0780 45 1 7.6767 -5.6712 -4.3842 46 1 8.5439 -2.3879 0.2933 47 1 8.2506 -4.0275 1.0223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030737321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:41 Heat of formation + Delta-G solvation = 36.989206 kcal Electronic energy + Delta-G solvation = -26567.759319 eV Core-core repulsion = 22944.736322 eV Total energy + Delta-G solvation = -3623.022997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51336 -39.99461 -38.69237 -38.37637 -35.31856 -34.07221 -33.62175 -31.95829 -29.86563 -29.28606 -28.45629 -26.63148 -25.99669 -25.15105 -24.21119 -22.72189 -21.86373 -21.46994 -21.04405 -18.79437 -18.61934 -17.41722 -17.01369 -16.86546 -16.59707 -16.24306 -15.98825 -15.83720 -15.78742 -15.58747 -15.33869 -14.66105 -14.59432 -14.01969 -13.83189 -13.72432 -13.59525 -13.27664 -13.21182 -13.20003 -12.88066 -12.74909 -12.67671 -12.61589 -12.51291 -12.37690 -12.27889 -11.97017 -11.87727 -11.66101 -11.54176 -10.84289 -10.51552 -10.02212 -9.80518 -9.63226 -9.21505 -8.98888 -7.93351 -5.27502 -0.04994 0.43981 1.44853 1.47928 1.57249 1.96729 2.17545 2.50167 2.88399 3.10371 3.26052 3.37649 3.76940 3.84192 3.90434 3.95530 4.09890 4.25022 4.25411 4.32167 4.35233 4.47906 4.49687 4.51722 4.56803 4.65065 4.69354 4.72614 4.73044 4.89063 4.91918 4.97208 4.99436 5.02563 5.10649 5.19518 5.23252 5.33940 5.42629 5.47356 5.54770 5.68369 5.73443 5.88241 6.01414 6.13960 6.20015 6.65261 6.87003 7.34275 7.57521 8.50763 9.23990 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.003229 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.124898 B = 8669.575803 C =10128.889780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.569 5.569 3 C 0.030 3.970 4 C 0.087 3.913 5 C -0.076 4.076 6 C -0.040 4.040 7 C -0.131 4.131 8 C -0.087 4.087 9 C -0.130 4.130 10 C -0.087 4.087 11 C -0.151 4.151 12 C 0.543 3.457 13 O -0.554 6.554 14 N -0.702 5.702 15 C 0.126 3.874 16 C 0.152 3.848 17 N -0.638 5.638 18 C -0.237 4.237 19 H 0.091 0.909 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.982 3.018 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.122 3.878 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.142 0.858 41 H 0.410 0.590 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.030 0.970 45 H 0.248 0.752 46 H 0.065 0.935 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 6.113 20.176 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.293 5.293 3 C -0.119 4.119 4 C -0.041 4.041 5 C -0.114 4.114 6 C -0.042 4.042 7 C -0.149 4.149 8 C -0.105 4.105 9 C -0.148 4.148 10 C -0.106 4.106 11 C -0.155 4.155 12 C 0.332 3.668 13 O -0.434 6.434 14 N -0.354 5.354 15 C 0.019 3.981 16 C 0.025 3.975 17 N -0.365 5.365 18 C -0.365 4.365 19 H 0.108 0.892 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.810 3.190 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.189 1.189 26 C -0.003 4.003 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.164 0.836 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.248 0.752 42 H 0.110 0.890 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.648 6.336 18.816 25.279 hybrid contribution 0.725 -0.232 -0.300 0.818 sum -14.923 6.104 18.516 24.551 Atomic orbital electron populations 1.22464 0.86383 1.02637 1.00957 1.61834 1.08993 1.14339 1.44114 1.22325 1.00226 0.88330 1.00971 1.21786 0.99438 0.92603 0.90281 1.20651 1.00064 0.93898 0.96746 1.20063 0.92257 0.95756 0.96099 1.21295 1.00501 0.99804 0.93256 1.21746 0.95960 0.94799 0.98004 1.21477 0.93862 1.00544 0.98935 1.21578 1.01040 0.95395 0.92557 1.19827 0.94590 1.05032 0.96010 1.18868 0.82009 0.79714 0.86228 1.90793 1.74176 1.38338 1.40048 1.45811 1.12453 1.51833 1.25332 1.23080 0.89186 0.98433 0.87385 1.22595 0.84669 0.94128 0.96071 1.46090 1.08638 1.65462 1.16316 1.19440 0.89800 1.33120 0.94143 0.89152 1.25726 0.99756 1.00544 1.00066 1.70057 1.24970 1.42289 1.22955 0.85015 0.77959 0.78098 0.77963 1.21133 1.22253 1.18856 1.23007 0.91828 0.97332 0.88133 0.94835 0.90856 0.91078 0.92848 0.90466 0.94879 0.94924 0.92623 0.90880 0.90456 0.83623 0.82423 0.82512 0.84025 0.75233 0.89014 0.95887 0.95104 0.94283 0.91677 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.32 127.69 1.19 1.65 16 2 N -0.57 -15.03 5.02 -948.84 -4.76 -19.79 16 3 C 0.03 0.68 9.57 127.69 1.22 1.90 16 4 C 0.09 2.32 4.47 86.30 0.39 2.70 16 5 C -0.08 -2.02 4.53 29.85 0.14 -1.88 16 6 C -0.04 -0.96 5.17 -19.61 -0.10 -1.06 16 7 C -0.13 -2.20 9.66 22.23 0.21 -1.99 16 8 C -0.09 -1.13 10.04 22.33 0.22 -0.91 16 9 C -0.13 -1.80 10.03 22.24 0.22 -1.58 16 10 C -0.09 -1.64 9.53 22.53 0.21 -1.42 16 11 C -0.15 -3.89 5.87 -20.09 -0.12 -4.01 16 12 C 0.54 17.92 7.64 86.79 0.66 18.58 16 13 O -0.55 -22.29 11.21 -3.90 -0.04 -22.33 16 14 N -0.70 -22.03 5.32 -450.25 -2.40 -24.42 16 15 C 0.13 5.02 4.40 46.74 0.21 5.23 16 16 C 0.15 7.69 7.34 86.44 0.63 8.33 16 17 N -0.64 -33.47 3.70 -716.59 -2.65 -36.12 16 18 C -0.24 -13.54 10.69 84.03 0.90 -12.64 16 19 H 0.09 4.84 7.84 -2.91 -0.02 4.82 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.95 -59.97 11.42 21.65 0.25 -59.72 16 22 Si 0.98 46.69 29.56 68.60 2.03 48.72 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.12 4.78 8.69 86.48 0.75 5.53 16 27 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 29 H 0.07 1.35 6.47 -2.39 -0.02 1.33 16 30 H 0.05 1.38 8.12 -2.38 -0.02 1.36 16 31 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 32 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.03 0.76 8.12 -2.39 -0.02 0.75 16 34 H 0.06 1.80 6.49 -2.38 -0.02 1.79 16 35 H 0.07 2.55 5.96 -2.39 -0.01 2.53 16 36 H 0.08 1.69 6.43 -2.39 -0.02 1.67 16 37 H 0.15 1.78 8.05 -2.91 -0.02 1.75 16 38 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.14 2.10 6.45 -2.91 -0.02 2.08 16 41 H 0.41 10.02 6.78 -92.71 -0.63 9.39 16 42 H 0.09 4.09 7.51 -2.39 -0.02 4.07 16 43 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.03 1.82 7.18 -2.39 -0.02 1.80 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.07 2.19 8.11 -2.39 -0.02 2.18 16 Total: -1.00 -76.22 376.73 -0.03 -76.25 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.34 Total: 22.49 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 7.21 Total: 14.93 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -9.56 Total: -140.06 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -76.22 -0.03 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030737321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.236 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds