Wall clock time and date at job start Tue Mar 31 2020 11:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99827 * 2 1 4 4 C 1.46894 * 110.99657 * 123.95437 * 2 1 3 5 5 C 1.50697 * 109.47538 * 66.05099 * 4 2 1 6 6 C 1.38362 * 119.85809 * 89.99288 * 5 4 2 7 7 C 1.37955 * 120.14478 * 180.02562 * 6 5 4 8 8 C 1.39571 * 119.85396 * 0.02562 * 7 6 5 9 9 C 1.47853 * 120.14155 * 179.97438 * 8 7 6 10 10 O 1.21549 * 120.00112 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99565 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99467 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46729 * 179.97438 * 12 11 9 14 14 C 1.53495 * 114.20448 * 175.00023 * 13 12 11 15 15 N 1.47066 * 87.98658 * 87.51959 * 14 13 12 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 13 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 13 25 25 C 1.39572 * 119.71564 * 0.25852 * 8 7 6 26 26 C 1.37962 * 119.84788 * 359.46479 * 25 8 7 27 27 H 1.08995 * 109.47087 * 296.04496 * 1 2 3 28 28 H 1.08997 * 109.46934 * 56.04990 * 1 2 3 29 29 H 1.09008 * 109.47050 * 176.04348 * 1 2 3 30 30 H 1.08993 * 109.46760 * 183.95213 * 3 2 1 31 31 H 1.09002 * 109.46838 * 303.95529 * 3 2 1 32 32 H 1.08999 * 109.47070 * 63.95290 * 3 2 1 33 33 H 1.08999 * 109.47656 * 306.04417 * 4 2 1 34 34 H 1.09004 * 109.47261 * 186.04808 * 4 2 1 35 35 H 1.08000 * 119.92487 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.07143 * 180.02562 * 7 6 5 37 37 H 0.96991 * 120.00203 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46922 * 60.00635 * 12 11 9 39 39 H 1.08994 * 109.47369 * 300.00007 * 12 11 9 40 40 H 1.08994 * 113.28034 * 41.93499 * 13 12 11 41 41 H 1.09005 * 113.46950 * 332.74525 * 14 13 12 42 42 H 1.08994 * 113.52293 * 202.31009 * 14 13 12 43 43 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 44 44 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 45 45 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 46 46 H 1.07998 * 120.07908 * 179.72075 * 25 8 7 47 47 H 1.08004 * 119.92888 * 180.27585 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9728 6 6 2.4969 -3.0698 0.2994 7 6 2.1745 -4.4021 0.1447 8 6 0.9775 -4.8927 0.6688 9 6 0.6253 -6.3194 0.5062 10 8 1.3791 -7.0680 -0.0845 11 7 -0.5315 -6.7899 1.0131 12 6 -0.8802 -8.2037 0.8524 13 6 -2.2328 -8.4738 1.5148 14 6 -2.7620 -9.8995 1.3066 15 7 -2.0065 -10.2990 2.5035 16 6 -1.4366 -11.4534 2.9701 17 1 -1.4999 -12.3606 2.3876 18 6 -0.7765 -11.4574 4.1913 19 7 -0.6989 -10.3516 4.9009 20 14 0.0016 -13.0320 4.8273 21 1 1.0286 -13.5013 3.8629 22 1 0.6392 -12.7725 6.1431 23 1 -1.0451 -14.0740 4.9818 24 6 -2.1382 -8.9146 2.9820 25 6 0.1117 -4.0294 1.3419 26 6 0.4488 -2.7003 1.4946 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0827 1.3432 -0.0708 31 1 1.5897 1.9163 -0.8524 32 1 1.7044 1.8724 0.9233 33 1 1.5611 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 3.4226 -2.6888 -0.1060 36 1 2.8468 -5.0642 -0.3808 37 1 -1.1331 -6.1925 1.4841 38 1 -0.1158 -8.8222 1.3229 39 1 -0.9403 -8.4448 -0.2088 40 1 -2.9685 -7.6920 1.3262 41 1 -2.4017 -10.3668 0.3900 42 1 -3.8420 -9.9845 1.4266 43 1 -0.2380 -10.3545 5.7544 44 1 -3.0523 -8.7362 3.5486 45 1 -1.2478 -8.5443 3.4900 46 1 -0.8181 -4.4017 1.7458 47 1 -0.2182 -2.0321 2.0191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032055275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:18 Heat of formation + Delta-G solvation = 56.490037 kcal Electronic energy + Delta-G solvation = -25665.981324 eV Core-core repulsion = 22043.803947 eV Total energy + Delta-G solvation = -3622.177377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.24802 -39.02291 -38.13282 -37.05203 -34.31445 -32.33070 -31.94398 -31.12155 -28.75593 -27.95077 -27.42744 -25.78502 -24.59300 -23.44765 -22.78527 -22.21072 -21.54614 -20.17677 -18.99994 -17.52855 -16.74487 -16.26310 -16.01776 -15.86596 -15.54668 -15.19999 -14.94328 -14.71356 -14.56112 -14.38678 -13.85676 -13.69579 -13.66043 -13.09762 -12.81162 -12.75933 -12.55147 -12.48305 -12.28476 -12.10139 -11.90299 -11.54173 -11.49642 -11.16247 -11.07541 -10.96699 -10.71764 -10.53123 -9.94761 -9.81225 -9.68476 -9.23736 -9.11037 -9.06254 -8.79255 -8.74149 -8.59072 -6.86797 -5.74811 -3.07002 0.74491 1.24718 2.90498 3.41117 3.42509 3.46364 3.47411 3.61631 3.94722 4.40457 4.48507 4.54186 4.73766 4.76473 4.85661 4.94874 4.99136 5.09125 5.19152 5.22332 5.27321 5.31102 5.32996 5.38552 5.44995 5.46199 5.59628 5.60216 5.69393 5.84251 6.02262 6.11423 6.16925 6.28776 6.33339 6.37265 6.53901 6.55425 6.59699 6.60157 6.68073 6.73938 6.83824 7.18366 7.29919 7.56475 7.78231 7.99766 8.46165 9.05883 9.72679 10.65569 11.42707 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002307 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.432895 B =12134.650127 C =12388.278603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.091 3.909 5 C -0.062 4.062 6 C -0.107 4.107 7 C -0.061 4.061 8 C -0.125 4.125 9 C 0.552 3.448 10 O -0.540 6.540 11 N -0.716 5.716 12 C 0.151 3.849 13 C -0.162 4.162 14 C 0.127 3.873 15 N -0.609 5.609 16 C -0.218 4.218 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.158 3.842 25 C -0.086 4.086 26 C -0.122 4.122 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.397 0.603 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.254 0.746 44 H 0.025 0.975 45 H 0.073 0.927 46 H 0.128 0.872 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 24.391 -8.648 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.037 4.037 5 C -0.062 4.062 6 C -0.125 4.125 7 C -0.080 4.080 8 C -0.128 4.128 9 C 0.339 3.661 10 O -0.418 6.418 11 N -0.367 5.367 12 C 0.028 3.972 13 C -0.182 4.182 14 C 0.000 4.000 15 N -0.335 5.335 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.033 3.967 25 C -0.105 4.105 26 C -0.140 4.140 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.232 0.768 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.146 0.854 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.619 23.379 -9.254 25.280 hybrid contribution -0.424 -0.179 1.561 1.628 sum 2.194 23.201 -7.693 24.541 Atomic orbital electron populations 1.22505 0.87086 1.03001 1.00395 1.61987 1.08407 1.13607 1.42568 1.22401 1.00874 0.88532 1.00613 1.21115 1.00718 0.89956 0.91874 1.19855 0.94525 0.94861 0.97004 1.20962 0.99935 0.92807 0.98839 1.21295 0.95177 0.95277 0.96279 1.20068 0.96822 0.93584 1.02312 1.18242 0.81462 0.87242 0.79172 1.90770 1.50078 1.58609 1.42338 1.45957 1.21336 1.12024 1.57345 1.21052 0.96684 0.79797 0.99672 1.23272 0.95552 0.97922 1.01426 1.22347 0.95004 0.90540 0.92094 1.45620 1.60889 1.07416 1.19594 1.18884 1.26967 0.86836 1.01808 0.90178 1.24786 1.01139 0.97487 0.97042 1.69807 1.47082 1.25663 1.14199 0.86192 0.79105 0.82391 0.78050 1.20985 1.21577 1.21215 1.22146 0.99570 0.84717 0.90314 1.21301 0.98850 0.93335 0.96974 1.20949 0.96678 0.95413 1.00992 0.95560 0.91377 0.90615 0.91220 0.91182 0.95598 0.93628 0.89646 0.85405 0.84581 0.76841 0.89715 0.92094 0.91074 0.93977 0.94638 0.93655 0.95771 0.90838 0.85420 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.13 60.07 0.55 0.67 16 2 N -0.54 -4.14 5.01 -252.72 -1.27 -5.41 16 3 C 0.02 0.14 9.57 60.07 0.57 0.71 16 4 C 0.09 0.68 5.11 -4.98 -0.03 0.65 16 5 C -0.06 -0.57 4.89 -104.53 -0.51 -1.09 16 6 C -0.11 -1.09 9.68 -39.64 -0.38 -1.47 16 7 C -0.06 -0.77 9.60 -39.19 -0.38 -1.14 16 8 C -0.12 -1.67 5.87 -104.97 -0.62 -2.29 16 9 C 0.55 9.25 7.77 -12.32 -0.10 9.15 16 10 O -0.54 -11.11 16.35 5.32 0.09 -11.02 16 11 N -0.72 -11.13 5.51 -61.24 -0.34 -11.47 16 12 C 0.15 2.75 5.50 -4.04 -0.02 2.73 16 13 C -0.16 -2.89 4.18 -90.10 -0.38 -3.27 16 14 C 0.13 2.56 8.26 -8.51 -0.07 2.49 16 15 N -0.61 -15.62 3.62 -184.76 -0.67 -16.28 16 16 C -0.22 -6.18 10.75 -15.06 -0.16 -6.34 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.59 11.51 55.49 0.64 -26.95 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.16 3.63 6.89 -8.51 -0.06 3.57 16 25 C -0.09 -0.92 9.54 -39.19 -0.37 -1.29 16 26 C -0.12 -1.13 7.94 -39.64 -0.31 -1.44 16 27 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.08 0.59 6.16 -51.92 -0.32 0.27 16 30 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.05 0.31 8.06 -51.93 -0.42 -0.10 16 34 H 0.09 0.56 8.00 -51.93 -0.42 0.15 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.74 7.65 -52.49 -0.40 1.34 16 37 H 0.40 4.97 6.51 -40.82 -0.27 4.71 16 38 H 0.08 1.93 7.91 -51.93 -0.41 1.52 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.88 7.09 -51.93 -0.37 1.52 16 46 H 0.13 1.13 6.41 -52.49 -0.34 0.79 16 47 H 0.12 0.89 8.02 -52.48 -0.42 0.47 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -34.11 384.39 -10.69 -44.79 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.55 Total: 1.65 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.36 Total: 1.32 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -1.63 Total: -60.11 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.11 -10.69 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032055275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.284 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds