Wall clock time and date at job start Tue Mar 31 2020 11:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99827 * 2 1 4 4 C 1.46894 * 110.99657 * 123.95437 * 2 1 3 5 5 C 1.50697 * 109.47538 * 66.05099 * 4 2 1 6 6 C 1.38362 * 119.85809 * 89.99288 * 5 4 2 7 7 C 1.37955 * 120.14478 * 180.02562 * 6 5 4 8 8 C 1.39571 * 119.85396 * 0.02562 * 7 6 5 9 9 C 1.47853 * 120.14155 * 179.97438 * 8 7 6 10 10 O 1.21549 * 120.00112 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99565 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99467 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46729 * 179.97438 * 12 11 9 14 14 C 1.53495 * 114.20448 * 175.00023 * 13 12 11 15 15 N 1.47066 * 87.98658 * 87.51959 * 14 13 12 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 13 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 13 25 25 C 1.39572 * 119.71564 * 0.25852 * 8 7 6 26 26 C 1.37962 * 119.84788 * 359.46479 * 25 8 7 27 27 H 1.08995 * 109.47087 * 296.04496 * 1 2 3 28 28 H 1.08997 * 109.46934 * 56.04990 * 1 2 3 29 29 H 1.09008 * 109.47050 * 176.04348 * 1 2 3 30 30 H 1.08993 * 109.46760 * 183.95213 * 3 2 1 31 31 H 1.09002 * 109.46838 * 303.95529 * 3 2 1 32 32 H 1.08999 * 109.47070 * 63.95290 * 3 2 1 33 33 H 1.08999 * 109.47656 * 306.04417 * 4 2 1 34 34 H 1.09004 * 109.47261 * 186.04808 * 4 2 1 35 35 H 1.08000 * 119.92487 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.07143 * 180.02562 * 7 6 5 37 37 H 0.96991 * 120.00203 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46922 * 60.00635 * 12 11 9 39 39 H 1.08994 * 109.47369 * 300.00007 * 12 11 9 40 40 H 1.08994 * 113.28034 * 41.93499 * 13 12 11 41 41 H 1.09005 * 113.46950 * 332.74525 * 14 13 12 42 42 H 1.08994 * 113.52293 * 202.31009 * 14 13 12 43 43 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 44 44 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 45 45 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 46 46 H 1.07998 * 120.07908 * 179.72075 * 25 8 7 47 47 H 1.08004 * 119.92888 * 180.27585 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9728 6 6 2.4969 -3.0698 0.2994 7 6 2.1745 -4.4021 0.1447 8 6 0.9775 -4.8927 0.6688 9 6 0.6253 -6.3194 0.5062 10 8 1.3791 -7.0680 -0.0845 11 7 -0.5315 -6.7899 1.0131 12 6 -0.8802 -8.2037 0.8524 13 6 -2.2328 -8.4738 1.5148 14 6 -2.7620 -9.8995 1.3066 15 7 -2.0065 -10.2990 2.5035 16 6 -1.4366 -11.4534 2.9701 17 1 -1.4999 -12.3606 2.3876 18 6 -0.7765 -11.4574 4.1913 19 7 -0.6989 -10.3516 4.9009 20 14 0.0016 -13.0320 4.8273 21 1 1.0286 -13.5013 3.8629 22 1 0.6392 -12.7725 6.1431 23 1 -1.0451 -14.0740 4.9818 24 6 -2.1382 -8.9146 2.9820 25 6 0.1117 -4.0294 1.3419 26 6 0.4488 -2.7003 1.4946 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0827 1.3432 -0.0708 31 1 1.5897 1.9163 -0.8524 32 1 1.7044 1.8724 0.9233 33 1 1.5611 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 3.4226 -2.6888 -0.1060 36 1 2.8468 -5.0642 -0.3808 37 1 -1.1331 -6.1925 1.4841 38 1 -0.1158 -8.8222 1.3229 39 1 -0.9403 -8.4448 -0.2088 40 1 -2.9685 -7.6920 1.3262 41 1 -2.4017 -10.3668 0.3900 42 1 -3.8420 -9.9845 1.4266 43 1 -0.2380 -10.3545 5.7544 44 1 -3.0523 -8.7362 3.5486 45 1 -1.2478 -8.5443 3.4900 46 1 -0.8181 -4.4017 1.7458 47 1 -0.2182 -2.0321 2.0191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032055275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:17 Heat of formation + Delta-G solvation = 33.017620 kcal Electronic energy + Delta-G solvation = -25666.999164 eV Core-core repulsion = 22043.803947 eV Total energy + Delta-G solvation = -3623.195218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35156 -40.25213 -39.55603 -37.75700 -35.79799 -34.24719 -32.93462 -31.97326 -30.42711 -28.60314 -28.36175 -27.22359 -26.32898 -24.58091 -24.02224 -23.35457 -22.33826 -21.32966 -20.51487 -18.91522 -18.54994 -17.44423 -16.96798 -16.81025 -16.52682 -16.38139 -16.26455 -16.05374 -15.70181 -15.39459 -15.31402 -14.92259 -14.53605 -14.49632 -14.22091 -14.01216 -13.44994 -13.35489 -13.19631 -13.05357 -12.93847 -12.80696 -12.64153 -12.57474 -12.44498 -12.31585 -12.20823 -11.92711 -11.83389 -11.63592 -11.15487 -10.98995 -10.84931 -10.19423 -9.93122 -9.77882 -9.24869 -8.90569 -7.91364 -5.23010 -0.18361 0.42875 1.42584 1.46502 1.51904 1.80727 2.13620 2.46690 2.79073 3.26129 3.30660 3.50253 3.60761 3.69828 3.80775 3.88176 3.96312 4.02859 4.24741 4.34506 4.42655 4.49714 4.51952 4.60270 4.61210 4.64159 4.77463 4.78892 4.80301 4.86962 4.89026 4.98178 5.05899 5.07676 5.08058 5.09620 5.24283 5.29321 5.36912 5.42713 5.53486 5.55880 5.62855 5.90801 5.95633 6.06069 6.11441 6.53914 6.91582 7.19031 7.60636 8.61427 9.25996 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002307 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.432895 B =12134.650127 C =12388.278603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.558 5.558 3 C 0.024 3.976 4 C 0.092 3.908 5 C -0.054 4.054 6 C -0.108 4.108 7 C -0.077 4.077 8 C -0.149 4.149 9 C 0.548 3.452 10 O -0.589 6.589 11 N -0.705 5.705 12 C 0.161 3.839 13 C -0.124 4.124 14 C 0.125 3.875 15 N -0.645 5.645 16 C -0.227 4.227 17 H 0.082 0.918 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.976 3.024 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.155 3.845 25 C -0.082 4.082 26 C -0.117 4.117 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.414 0.586 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.247 0.753 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.147 0.853 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 26.715 -9.007 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.282 5.282 3 C -0.123 4.123 4 C -0.035 4.035 5 C -0.054 4.054 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.152 4.152 9 C 0.337 3.663 10 O -0.471 6.471 11 N -0.356 5.356 12 C 0.037 3.963 13 C -0.144 4.144 14 C -0.001 4.001 15 N -0.371 5.371 16 C -0.355 4.355 17 H 0.100 0.900 18 C -0.263 4.263 19 N -0.601 5.601 20 Si 0.804 3.196 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.200 1.200 24 C 0.029 3.971 25 C -0.101 4.101 26 C -0.135 4.135 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.252 0.748 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.141 0.859 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.165 0.835 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.373 25.733 -9.631 27.511 hybrid contribution -0.061 -0.792 1.611 1.796 sum 1.312 24.941 -8.020 26.232 Atomic orbital electron populations 1.22508 0.86819 1.02584 1.01122 1.61975 1.08851 1.14712 1.42670 1.22431 1.01187 0.87587 1.01142 1.21139 1.01475 0.88500 0.92412 1.20175 0.94015 0.95889 0.95360 1.21138 1.00858 0.91809 0.98810 1.21310 0.95049 0.96301 0.96923 1.19883 0.98352 0.91889 1.05102 1.18841 0.80881 0.88514 0.78030 1.90733 1.51539 1.60209 1.44662 1.45775 1.21561 1.11073 1.57213 1.20729 0.95434 0.80648 0.99462 1.23007 0.96023 0.98402 0.96939 1.22581 0.95700 0.91413 0.90361 1.45988 1.61841 1.07552 1.21757 1.19266 1.26460 0.88042 1.01730 0.89999 1.25609 1.02446 1.00523 0.97701 1.69992 1.48375 1.27460 1.14244 0.85188 0.78321 0.79079 0.77002 1.20643 1.22003 1.20040 1.22139 0.97871 0.84011 0.93049 1.21504 0.98925 0.93622 0.96012 1.21261 0.96916 0.95024 1.00344 0.94621 0.90959 0.91517 0.90719 0.90754 0.94955 0.92488 0.88728 0.83715 0.86112 0.74834 0.95038 0.91317 0.85915 0.93251 0.92230 0.94439 0.95668 0.94469 0.83526 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.13 127.69 1.17 1.36 16 2 N -0.56 -7.01 5.01 -953.47 -4.78 -11.79 16 3 C 0.02 0.21 9.57 127.69 1.22 1.43 16 4 C 0.09 1.10 5.11 85.56 0.44 1.54 16 5 C -0.05 -0.87 4.89 -19.81 -0.10 -0.97 16 6 C -0.11 -2.07 9.68 22.23 0.22 -1.86 16 7 C -0.08 -1.95 9.60 22.52 0.22 -1.74 16 8 C -0.15 -4.00 5.87 -20.09 -0.12 -4.12 16 9 C 0.55 18.86 7.77 86.79 0.67 19.54 16 10 O -0.59 -25.61 16.35 -3.87 -0.06 -25.67 16 11 N -0.70 -21.69 5.51 -465.95 -2.57 -24.26 16 12 C 0.16 5.91 5.50 86.38 0.47 6.38 16 13 C -0.12 -4.22 4.18 -10.46 -0.04 -4.27 16 14 C 0.12 4.83 8.26 83.18 0.69 5.52 16 15 N -0.64 -33.28 3.62 -738.46 -2.67 -35.95 16 16 C -0.23 -13.08 10.75 84.03 0.90 -12.17 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 19 N -0.95 -58.85 11.51 21.65 0.25 -58.60 16 20 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.16 7.11 6.89 83.18 0.57 7.69 16 25 C -0.08 -1.61 9.54 22.53 0.21 -1.39 16 26 C -0.12 -1.84 7.94 22.23 0.18 -1.66 16 27 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.07 0.86 6.16 -2.38 -0.01 0.84 16 30 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 31 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.58 8.06 -2.39 -0.02 0.56 16 34 H 0.09 0.97 8.00 -2.38 -0.02 0.95 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.12 3.34 7.65 -2.91 -0.02 3.32 16 37 H 0.41 9.66 6.51 -92.72 -0.60 9.05 16 38 H 0.03 1.50 7.91 -2.39 -0.02 1.48 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.05 1.84 8.12 -2.38 -0.02 1.82 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.04 1.97 7.09 -2.39 -0.02 1.95 16 46 H 0.15 2.20 6.41 -2.91 -0.02 2.18 16 47 H 0.15 1.56 8.02 -2.91 -0.02 1.54 16 Total: -1.00 -77.64 384.39 -0.28 -77.92 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.35 Total: 17.27 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.17 Total: 11.63 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -9.76 Total: -130.59 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.64 -0.28 -77.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032055275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.937 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds