Wall clock time and date at job start Tue Mar 31 2020 11:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46892 * 110.99977 * 2 1 4 4 C 1.46896 * 111.00000 * 123.95572 * 2 1 3 5 5 C 1.50704 * 109.47295 * 165.68231 * 4 2 1 6 6 C 1.37976 * 120.07124 * 104.68999 * 5 4 2 7 7 C 1.38339 * 120.14019 * 179.97438 * 6 5 4 8 8 C 1.38375 * 120.29574 * 0.02562 * 7 6 5 9 9 C 1.37943 * 120.14470 * 359.97438 * 8 7 6 10 10 C 1.39556 * 120.07301 * 284.41531 * 5 4 2 11 11 C 1.47851 * 120.14179 * 359.97438 * 10 5 4 12 12 O 1.21551 * 120.00164 * 5.13331 * 11 10 5 13 13 N 1.34779 * 119.99549 * 185.13085 * 11 10 5 14 14 C 1.46501 * 119.99792 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46902 * 179.97438 * 14 13 11 16 16 C 1.53949 * 113.74320 * 273.73759 * 15 14 13 17 17 N 1.47812 * 86.03346 * 222.08743 * 16 15 14 18 18 C 1.36944 * 134.45316 * 204.64759 * 17 16 15 19 19 H 1.07999 * 119.99803 * 179.87257 * 18 17 16 20 20 C 1.38808 * 119.99784 * 359.86155 * 18 17 16 21 21 N 1.31625 * 120.00484 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46925 * 60.00505 * 22 20 18 24 24 H 1.48505 * 109.46867 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47086 * 300.00154 * 22 20 18 26 26 C 1.47577 * 91.05428 * 24.55021 * 17 16 15 27 27 H 1.08997 * 109.46796 * 296.04337 * 1 2 3 28 28 H 1.08997 * 109.47066 * 56.04648 * 1 2 3 29 29 H 1.09006 * 109.47118 * 176.04377 * 1 2 3 30 30 H 1.09001 * 109.47512 * 189.26760 * 3 2 1 31 31 H 1.09007 * 109.47290 * 309.26997 * 3 2 1 32 32 H 1.08998 * 109.47375 * 69.26905 * 3 2 1 33 33 H 1.09002 * 109.47450 * 45.68337 * 4 2 1 34 34 H 1.08999 * 109.47171 * 285.68531 * 4 2 1 35 35 H 1.07995 * 119.93253 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.85255 * 179.97438 * 7 6 5 37 37 H 1.08006 * 119.92547 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.07121 * 180.02562 * 9 8 7 39 39 H 0.96999 * 119.99834 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47092 * 299.99588 * 14 13 11 41 41 H 1.09004 * 109.47245 * 59.99874 * 14 13 11 42 42 H 1.09001 * 112.94620 * 45.33550 * 15 14 13 43 43 H 1.08999 * 113.77043 * 336.35217 * 16 15 14 44 44 H 1.09002 * 113.76486 * 107.74825 * 16 15 14 45 45 H 0.97000 * 120.00016 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.76890 * 221.15242 * 26 17 16 47 47 H 1.09000 * 113.76737 * 89.75629 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4608 -1.0438 0.9211 6 6 4.4106 -0.3336 1.6260 7 6 5.7561 -0.5878 1.4289 8 6 6.1586 -1.5545 0.5242 9 6 5.2191 -2.2717 -0.1870 10 6 3.8598 -2.0241 0.0114 11 6 2.8471 -2.7935 -0.7426 12 8 1.6693 -2.5107 -0.6413 13 7 3.2300 -3.8086 -1.5422 14 6 2.2267 -4.5708 -2.2898 15 6 2.9211 -5.6569 -3.1138 16 6 3.4063 -5.1738 -4.4926 17 7 2.8959 -6.4613 -5.0091 18 6 3.1878 -7.2422 -6.0956 19 1 2.6563 -8.1692 -6.2527 20 6 4.1665 -6.8422 -6.9949 21 7 4.8145 -5.7126 -6.8033 22 14 4.5642 -7.9071 -8.4773 23 1 3.3484 -8.0622 -9.3157 24 1 5.6378 -7.2629 -9.2758 25 1 5.0228 -9.2429 -8.0185 26 6 1.9479 -6.5683 -3.8832 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 3.0726 1.3472 -0.1655 31 1 1.5184 1.9437 -0.7956 32 1 1.7861 1.8410 0.9611 33 1 1.4554 -1.7091 1.2217 34 1 1.8663 -0.1904 2.0541 35 1 4.1032 0.4225 2.3333 36 1 6.4957 -0.0288 1.9829 37 1 7.2106 -1.7478 0.3747 38 1 5.5346 -3.0261 -0.8925 39 1 4.1700 -4.0341 -1.6234 40 1 1.5285 -5.0338 -1.5925 41 1 1.6839 -3.9007 -2.9565 42 1 3.6776 -6.2010 -2.5482 43 1 2.8665 -4.3047 -4.8686 44 1 4.4887 -5.0680 -4.5651 45 1 5.4987 -5.4334 -7.4316 46 1 1.8681 -7.5739 -3.4702 47 1 0.9788 -6.1097 -4.0798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032207125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:22 Heat of formation + Delta-G solvation = 62.370743 kcal Electronic energy + Delta-G solvation = -26454.775108 eV Core-core repulsion = 22832.852738 eV Total energy + Delta-G solvation = -3621.922371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.38150 -38.59231 -37.67175 -37.04142 -34.30611 -32.23723 -31.81648 -31.33421 -28.70410 -27.54903 -26.95066 -25.78031 -24.75547 -23.69155 -22.55532 -21.97861 -20.92924 -20.31929 -19.02233 -17.58230 -16.68496 -16.14925 -15.94495 -15.57417 -15.34740 -15.14171 -15.00832 -14.61713 -14.49162 -14.30981 -13.90888 -13.59158 -13.21028 -12.92939 -12.85999 -12.53565 -12.42195 -12.22795 -12.10628 -11.74761 -11.59827 -11.54487 -11.35836 -11.28782 -11.13034 -10.95579 -10.69933 -10.53069 -9.93372 -9.71388 -9.46389 -9.32543 -9.10406 -8.97058 -8.77568 -8.61395 -8.23055 -6.85300 -5.74654 -3.06714 0.81621 1.17117 3.01518 3.40695 3.43353 3.45354 3.46239 3.77181 4.17044 4.47333 4.62551 4.63157 4.73671 4.89717 5.07701 5.15366 5.19716 5.26192 5.31680 5.35041 5.39174 5.40868 5.46185 5.57897 5.66338 5.70065 5.75758 5.81043 5.88469 5.89913 6.03245 6.10369 6.15555 6.26780 6.29217 6.36261 6.42129 6.62166 6.70326 6.72095 6.84350 7.06485 7.12510 7.24902 7.39000 7.57283 7.80606 8.00282 8.52384 9.06812 9.73037 10.62630 11.42410 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.002766 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.007955 B =10121.270310 C =10872.880043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.022 3.978 4 C 0.099 3.901 5 C -0.026 4.026 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.127 4.127 9 C -0.088 4.088 10 C -0.109 4.109 11 C 0.551 3.449 12 O -0.515 6.515 13 N -0.722 5.722 14 C 0.134 3.866 15 C -0.154 4.154 16 C 0.169 3.831 17 N -0.613 5.613 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.129 3.871 27 H 0.014 0.986 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.102 0.898 34 H 0.030 0.970 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.398 0.602 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.254 0.746 46 H 0.044 0.956 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 12.594 19.962 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.243 5.243 3 C -0.127 4.127 4 C -0.028 4.028 5 C -0.027 4.027 6 C -0.145 4.145 7 C -0.118 4.118 8 C -0.146 4.146 9 C -0.106 4.106 10 C -0.112 4.112 11 C 0.338 3.662 12 O -0.392 6.392 13 N -0.374 5.374 14 C 0.010 3.990 15 C -0.173 4.173 16 C 0.044 3.956 17 N -0.339 5.339 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.002 3.998 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.233 0.767 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.258 12.459 19.261 22.974 hybrid contribution 0.550 -0.126 -0.333 0.656 sum -0.707 12.333 18.928 22.602 Atomic orbital electron populations 1.22288 0.86849 1.02870 0.99216 1.61733 1.07925 1.12139 1.42469 1.22459 1.01081 0.89477 0.99650 1.21080 0.91349 0.99815 0.90601 1.19850 0.95648 0.93318 0.93919 1.21014 0.92790 1.00115 1.00625 1.21272 0.95778 0.97246 0.97545 1.21110 0.99738 0.96749 0.96969 1.21420 0.92037 0.98842 0.98339 1.19888 0.93335 0.98730 0.99287 1.18156 0.88385 0.79991 0.79672 1.90734 1.17753 1.66909 1.63808 1.45998 1.11208 1.33856 1.46289 1.21397 0.90558 0.92986 0.94022 1.23796 0.99804 0.96800 0.96940 1.22347 0.99730 0.88324 0.85208 1.45980 1.40367 1.21352 1.26227 1.18988 1.16053 1.00698 0.99351 0.90347 1.24775 0.99138 0.97494 0.99065 1.69806 1.27109 1.22185 1.37802 0.86207 0.77672 0.79428 0.82493 1.21213 1.21564 1.21118 1.22480 0.92942 0.96577 0.87795 0.96700 0.91867 0.90471 0.91650 0.91697 0.96250 0.88016 0.95196 0.85958 0.85832 0.85483 0.85296 0.76717 0.92090 0.91394 0.89344 0.95464 0.91054 0.93642 0.93748 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 9.32 60.07 0.56 0.96 16 2 N -0.52 -6.50 3.82 -252.72 -0.96 -7.46 16 3 C 0.02 0.23 9.37 60.06 0.56 0.79 16 4 C 0.10 1.16 4.11 -4.98 -0.02 1.14 16 5 C -0.03 -0.30 4.66 -104.22 -0.49 -0.79 16 6 C -0.13 -1.19 9.33 -39.64 -0.37 -1.56 16 7 C -0.10 -0.85 10.04 -39.49 -0.40 -1.24 16 8 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 9 C -0.09 -0.94 9.53 -39.19 -0.37 -1.31 16 10 C -0.11 -1.38 5.87 -104.97 -0.62 -1.99 16 11 C 0.55 8.14 7.72 -12.33 -0.10 8.05 16 12 O -0.52 -8.63 11.87 5.32 0.06 -8.56 16 13 N -0.72 -10.22 5.51 -61.25 -0.34 -10.55 16 14 C 0.13 2.11 5.51 -4.04 -0.02 2.09 16 15 C -0.15 -2.76 3.93 -89.69 -0.35 -3.11 16 16 C 0.17 3.92 7.08 -2.84 -0.02 3.90 16 17 N -0.61 -15.80 3.70 -177.72 -0.66 -16.46 16 18 C -0.22 -6.32 10.70 -15.06 -0.16 -6.49 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.36 11.39 55.49 0.63 -26.73 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.13 2.61 8.51 -2.97 -0.03 2.58 16 27 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 29 H 0.08 0.97 7.61 -51.93 -0.40 0.58 16 30 H 0.06 0.70 7.33 -51.93 -0.38 0.32 16 31 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.02 0.17 8.02 -51.93 -0.42 -0.24 16 33 H 0.10 1.35 6.26 -51.93 -0.32 1.03 16 34 H 0.03 0.30 7.80 -51.93 -0.41 -0.10 16 35 H 0.12 0.91 8.00 -52.49 -0.42 0.49 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 38 H 0.13 1.22 6.44 -52.49 -0.34 0.88 16 39 H 0.40 4.98 6.54 -40.82 -0.27 4.71 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 43 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 44 H 0.07 1.81 7.16 -51.93 -0.37 1.43 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -32.83 378.35 -10.37 -43.20 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.48 Total: 2.51 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.31 Total: 1.13 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -1.33 Total: -61.20 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.83 -10.37 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.574 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds