Wall clock time and date at job start Tue Mar 31 2020 11:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46892 * 110.99977 * 2 1 4 4 C 1.46896 * 111.00000 * 123.95572 * 2 1 3 5 5 C 1.50704 * 109.47295 * 165.68231 * 4 2 1 6 6 C 1.37976 * 120.07124 * 104.68999 * 5 4 2 7 7 C 1.38339 * 120.14019 * 179.97438 * 6 5 4 8 8 C 1.38375 * 120.29574 * 0.02562 * 7 6 5 9 9 C 1.37943 * 120.14470 * 359.97438 * 8 7 6 10 10 C 1.39556 * 120.07301 * 284.41531 * 5 4 2 11 11 C 1.47851 * 120.14179 * 359.97438 * 10 5 4 12 12 O 1.21551 * 120.00164 * 5.13331 * 11 10 5 13 13 N 1.34779 * 119.99549 * 185.13085 * 11 10 5 14 14 C 1.46501 * 119.99792 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46902 * 179.97438 * 14 13 11 16 16 C 1.53949 * 113.74320 * 273.73759 * 15 14 13 17 17 N 1.47812 * 86.03346 * 222.08743 * 16 15 14 18 18 C 1.36944 * 134.45316 * 204.64759 * 17 16 15 19 19 H 1.07999 * 119.99803 * 179.87257 * 18 17 16 20 20 C 1.38808 * 119.99784 * 359.86155 * 18 17 16 21 21 N 1.31625 * 120.00484 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46925 * 60.00505 * 22 20 18 24 24 H 1.48505 * 109.46867 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47086 * 300.00154 * 22 20 18 26 26 C 1.47577 * 91.05428 * 24.55021 * 17 16 15 27 27 H 1.08997 * 109.46796 * 296.04337 * 1 2 3 28 28 H 1.08997 * 109.47066 * 56.04648 * 1 2 3 29 29 H 1.09006 * 109.47118 * 176.04377 * 1 2 3 30 30 H 1.09001 * 109.47512 * 189.26760 * 3 2 1 31 31 H 1.09007 * 109.47290 * 309.26997 * 3 2 1 32 32 H 1.08998 * 109.47375 * 69.26905 * 3 2 1 33 33 H 1.09002 * 109.47450 * 45.68337 * 4 2 1 34 34 H 1.08999 * 109.47171 * 285.68531 * 4 2 1 35 35 H 1.07995 * 119.93253 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.85255 * 179.97438 * 7 6 5 37 37 H 1.08006 * 119.92547 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.07121 * 180.02562 * 9 8 7 39 39 H 0.96999 * 119.99834 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47092 * 299.99588 * 14 13 11 41 41 H 1.09004 * 109.47245 * 59.99874 * 14 13 11 42 42 H 1.09001 * 112.94620 * 45.33550 * 15 14 13 43 43 H 1.08999 * 113.77043 * 336.35217 * 16 15 14 44 44 H 1.09002 * 113.76486 * 107.74825 * 16 15 14 45 45 H 0.97000 * 120.00016 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.76890 * 221.15242 * 26 17 16 47 47 H 1.09000 * 113.76737 * 89.75629 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4608 -1.0438 0.9211 6 6 4.4106 -0.3336 1.6260 7 6 5.7561 -0.5878 1.4289 8 6 6.1586 -1.5545 0.5242 9 6 5.2191 -2.2717 -0.1870 10 6 3.8598 -2.0241 0.0114 11 6 2.8471 -2.7935 -0.7426 12 8 1.6693 -2.5107 -0.6413 13 7 3.2300 -3.8086 -1.5422 14 6 2.2267 -4.5708 -2.2898 15 6 2.9211 -5.6569 -3.1138 16 6 3.4063 -5.1738 -4.4926 17 7 2.8959 -6.4613 -5.0091 18 6 3.1878 -7.2422 -6.0956 19 1 2.6563 -8.1692 -6.2527 20 6 4.1665 -6.8422 -6.9949 21 7 4.8145 -5.7126 -6.8033 22 14 4.5642 -7.9071 -8.4773 23 1 3.3484 -8.0622 -9.3157 24 1 5.6378 -7.2629 -9.2758 25 1 5.0228 -9.2429 -8.0185 26 6 1.9479 -6.5683 -3.8832 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 3.0726 1.3472 -0.1655 31 1 1.5184 1.9437 -0.7956 32 1 1.7861 1.8410 0.9611 33 1 1.4554 -1.7091 1.2217 34 1 1.8663 -0.1904 2.0541 35 1 4.1032 0.4225 2.3333 36 1 6.4957 -0.0288 1.9829 37 1 7.2106 -1.7478 0.3747 38 1 5.5346 -3.0261 -0.8925 39 1 4.1700 -4.0341 -1.6234 40 1 1.5285 -5.0338 -1.5925 41 1 1.6839 -3.9007 -2.9565 42 1 3.6776 -6.2010 -2.5482 43 1 2.8665 -4.3047 -4.8686 44 1 4.4887 -5.0680 -4.5651 45 1 5.4987 -5.4334 -7.4316 46 1 1.8681 -7.5739 -3.4702 47 1 0.9788 -6.1097 -4.0798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032207125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:21 Heat of formation + Delta-G solvation = 41.566807 kcal Electronic energy + Delta-G solvation = -26455.677235 eV Core-core repulsion = 22832.852738 eV Total energy + Delta-G solvation = -3622.824497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35013 -39.97021 -38.99760 -37.89463 -35.63832 -34.17637 -32.61763 -32.30049 -30.35518 -28.39652 -28.00162 -27.28075 -26.52903 -24.74946 -23.66409 -23.29291 -21.87420 -21.46565 -20.53507 -18.79897 -18.51416 -17.18881 -16.96408 -16.82914 -16.50825 -16.31030 -16.15845 -15.87929 -15.65822 -15.31230 -15.13664 -15.05186 -14.65743 -14.06940 -14.03054 -13.68931 -13.39588 -13.23813 -13.20998 -13.08862 -12.91708 -12.82798 -12.60280 -12.53738 -12.44294 -12.39514 -12.21287 -11.90202 -11.78802 -11.55277 -11.23646 -10.85559 -10.49678 -10.01334 -9.81915 -9.65688 -9.08431 -8.90958 -7.89503 -5.23001 -0.01132 0.42505 1.45665 1.49208 1.55265 2.05867 2.30195 2.48491 2.88665 3.31008 3.33739 3.40749 3.72969 3.82199 3.87807 3.91375 4.13383 4.21006 4.30192 4.36434 4.38308 4.46489 4.54640 4.60160 4.62390 4.64745 4.76890 4.79293 4.84212 4.87637 4.88491 4.99792 5.01176 5.08809 5.11656 5.12848 5.26548 5.42081 5.51370 5.54975 5.56581 5.58774 5.67420 5.94884 5.99724 6.20606 6.29405 6.69102 6.92945 7.40198 7.61652 8.57741 9.27110 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.002766 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.007955 B =10121.270310 C =10872.880043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.545 5.545 3 C 0.026 3.974 4 C 0.104 3.896 5 C -0.039 4.039 6 C -0.126 4.126 7 C -0.091 4.091 8 C -0.129 4.129 9 C -0.096 4.096 10 C -0.134 4.134 11 C 0.547 3.453 12 O -0.541 6.541 13 N -0.720 5.720 14 C 0.149 3.851 15 C -0.115 4.115 16 C 0.167 3.833 17 N -0.645 5.645 18 C -0.238 4.238 19 H 0.083 0.917 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.127 3.873 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.406 0.594 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.103 0.897 43 H 0.009 0.991 44 H 0.044 0.956 45 H 0.248 0.752 46 H 0.062 0.938 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 12.972 21.654 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.269 5.269 3 C -0.122 4.122 4 C -0.023 4.023 5 C -0.041 4.041 6 C -0.145 4.145 7 C -0.109 4.109 8 C -0.147 4.147 9 C -0.115 4.115 10 C -0.137 4.137 11 C 0.335 3.665 12 O -0.419 6.419 13 N -0.372 5.372 14 C 0.024 3.976 15 C -0.135 4.135 16 C 0.042 3.958 17 N -0.372 5.372 18 C -0.367 4.367 19 H 0.101 0.899 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.002 3.998 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.152 0.848 39 H 0.242 0.758 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.368 12.826 20.985 24.597 hybrid contribution 0.263 -0.202 -0.802 0.868 sum -0.106 12.624 20.183 23.806 Atomic orbital electron populations 1.22199 0.86671 1.01750 1.00102 1.61695 1.08388 1.13427 1.43378 1.22421 1.00655 0.88537 1.00588 1.20977 0.91406 0.98910 0.91053 1.19980 0.95980 0.93704 0.94398 1.21273 0.92843 0.99993 1.00357 1.21681 0.96055 0.96483 0.96698 1.21446 1.00599 0.96277 0.96399 1.21572 0.91612 0.99423 0.98863 1.19815 0.93543 0.99867 1.00520 1.18588 0.88672 0.79790 0.79419 1.90724 1.18933 1.67582 1.64685 1.45914 1.11320 1.33875 1.46111 1.21095 0.90653 0.92052 0.93762 1.23398 0.99000 0.96381 0.94682 1.22246 0.97856 0.87291 0.88450 1.46405 1.42133 1.21915 1.26707 1.19416 1.15839 1.01259 1.00165 0.89907 1.25632 0.99414 0.98968 1.02021 1.69999 1.27683 1.23869 1.38605 0.85147 0.77231 0.77986 0.78926 1.20602 1.21973 1.19991 1.22682 0.92897 0.98138 0.86133 0.95094 0.91679 0.92498 0.92084 0.91560 0.94623 0.90317 0.93528 0.83779 0.82635 0.83131 0.84801 0.75772 0.90737 0.93244 0.87921 0.97307 0.93739 0.94280 0.91949 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 9.32 127.69 1.19 2.12 16 2 N -0.55 -13.51 3.82 -953.48 -3.64 -17.15 16 3 C 0.03 0.51 9.37 127.69 1.20 1.71 16 4 C 0.10 2.39 4.11 85.56 0.35 2.74 16 5 C -0.04 -0.87 4.66 -19.61 -0.09 -0.96 16 6 C -0.13 -2.04 9.33 22.23 0.21 -1.83 16 7 C -0.09 -1.23 10.04 22.33 0.22 -1.01 16 8 C -0.13 -2.01 10.03 22.23 0.22 -1.78 16 9 C -0.10 -1.95 9.53 22.53 0.21 -1.73 16 10 C -0.13 -3.34 5.87 -20.09 -0.12 -3.46 16 11 C 0.55 16.36 7.72 86.79 0.67 17.03 16 12 O -0.54 -18.61 11.87 -3.88 -0.05 -18.65 16 13 N -0.72 -20.38 5.51 -465.96 -2.57 -22.94 16 14 C 0.15 4.64 5.51 86.38 0.48 5.12 16 15 C -0.11 -4.08 3.93 -10.13 -0.04 -4.12 16 16 C 0.17 7.93 7.08 86.44 0.61 8.55 16 17 N -0.65 -33.52 3.70 -716.17 -2.65 -36.18 16 18 C -0.24 -13.60 10.70 84.03 0.90 -12.70 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.95 -57.92 11.39 21.65 0.25 -57.68 16 22 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 C 0.13 5.04 8.51 86.49 0.74 5.77 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 29 H 0.06 1.50 7.61 -2.38 -0.02 1.48 16 30 H 0.06 1.23 7.33 -2.39 -0.02 1.21 16 31 H 0.07 1.24 8.03 -2.38 -0.02 1.23 16 32 H 0.04 0.57 8.02 -2.39 -0.02 0.55 16 33 H 0.08 2.16 6.26 -2.39 -0.01 2.14 16 34 H 0.05 0.88 7.80 -2.39 -0.02 0.86 16 35 H 0.14 1.64 8.00 -2.91 -0.02 1.62 16 36 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.13 2.44 6.44 -2.91 -0.02 2.43 16 39 H 0.41 10.08 6.54 -92.71 -0.61 9.47 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.05 1.75 7.87 -2.38 -0.02 1.73 16 42 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.01 0.46 7.92 -2.39 -0.02 0.44 16 44 H 0.04 2.33 7.16 -2.39 -0.02 2.32 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -72.27 378.35 0.94 -71.33 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.35 Total: 21.11 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 7.22 Total: 12.03 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -8.61 Total: -133.95 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.27 0.94 -71.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032207125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.896 kcal (2) G-P(sol) polarization free energy of solvation -72.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds