Wall clock time and date at job start Tue Mar 31 2020 11:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99762 * 2 1 4 4 O 1.21629 * 119.99693 * 175.79217 * 3 2 1 5 5 C 1.47259 * 120.00165 * 355.78756 * 3 2 1 6 6 C 1.46756 * 126.96656 * 35.10142 * 5 3 2 7 7 C 1.34501 * 106.36528 * 179.97438 * 6 5 3 8 8 N 1.36430 * 109.00918 * 0.02562 * 7 6 5 9 9 C 1.35213 * 109.89989 * 359.77675 * 8 7 6 10 10 C 1.50999 * 124.54528 * 180.20059 * 9 8 7 11 11 C 1.53390 * 108.24939 * 344.47545 * 10 9 8 12 12 C 1.53163 * 109.04005 * 48.48200 * 11 10 9 13 13 C 1.47018 * 126.00911 * 180.02562 * 8 7 6 14 14 C 1.46503 * 120.00166 * 180.02562 * 2 1 3 15 15 H 1.09001 * 110.77897 * 178.21153 * 14 2 1 16 16 C 1.55159 * 110.71877 * 54.97469 * 14 2 1 17 17 C 1.55129 * 101.48487 * 205.96672 * 16 14 2 18 18 N 1.47428 * 104.72181 * 37.29676 * 17 16 14 19 19 C 1.36928 * 125.64762 * 155.81554 * 18 17 16 20 20 H 1.08005 * 120.00159 * 185.31141 * 19 18 17 21 21 C 1.38812 * 120.00212 * 5.30841 * 19 18 17 22 22 N 1.31616 * 120.00007 * 34.93415 * 21 19 18 23 23 Si 1.86802 * 120.00180 * 214.93187 * 21 19 18 24 24 H 1.48501 * 109.47170 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47043 * 300.00070 * 23 21 19 26 26 H 1.48500 * 109.47158 * 60.00030 * 23 21 19 27 27 C 1.47021 * 108.70260 * 335.55109 * 18 17 16 28 28 H 1.08994 * 109.47313 * 275.56639 * 1 2 3 29 29 H 1.08998 * 109.47687 * 35.57176 * 1 2 3 30 30 H 1.09007 * 109.46661 * 155.56849 * 1 2 3 31 31 H 1.07998 * 126.81751 * 359.92023 * 6 5 3 32 32 H 1.08000 * 125.49377 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.70868 * 104.16543 * 10 9 8 34 34 H 1.08998 * 109.70393 * 224.78584 * 10 9 8 35 35 H 1.09001 * 109.54704 * 168.35188 * 11 10 9 36 36 H 1.09006 * 109.54708 * 288.61424 * 11 10 9 37 37 H 1.08998 * 109.46253 * 50.44797 * 12 11 10 38 38 H 1.09003 * 109.46053 * 170.42144 * 12 11 10 39 39 H 1.09000 * 109.56257 * 282.25825 * 13 8 7 40 40 H 1.08995 * 109.56647 * 42.59013 * 13 8 7 41 41 H 1.08992 * 111.00774 * 324.21028 * 16 14 2 42 42 H 1.09006 * 111.00309 * 88.02153 * 16 14 2 43 43 H 1.09001 * 110.49862 * 278.45485 * 17 16 14 44 44 H 1.09000 * 110.33926 * 156.05994 * 17 16 14 45 45 H 0.97003 * 119.99798 * 355.37722 * 22 21 19 46 46 H 1.09003 * 109.88161 * 120.70022 * 27 18 17 47 47 H 1.08995 * 109.88293 * 241.71795 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3526 1.1686 0.0773 5 6 1.4055 2.4408 -0.0937 6 6 0.0934 2.7485 0.4874 7 6 -0.1811 4.0214 0.1506 8 7 0.8525 4.5184 -0.5883 9 6 1.8097 3.5745 -0.7339 10 6 3.1012 3.7744 -1.4903 11 6 2.9599 5.0310 -2.3585 12 6 2.4034 6.1711 -1.5004 13 6 0.9405 5.8746 -1.1490 14 6 2.1975 -1.2687 -0.0006 15 1 3.2730 -1.0943 -0.0323 16 6 1.7507 -2.1601 -1.1894 17 6 2.0692 -3.5787 -0.6486 18 7 1.7325 -3.5174 0.7854 19 6 1.4006 -4.5867 1.5736 20 1 1.0863 -4.4280 2.5947 21 6 1.4679 -5.8747 1.0604 22 7 2.4077 -6.1898 0.1946 23 14 0.2246 -7.1608 1.5987 24 1 0.5120 -8.4453 0.9112 25 1 0.3177 -7.3548 3.0681 26 1 -1.1438 -6.7049 1.2453 27 6 1.8183 -2.1188 1.2304 28 1 -0.3633 0.0997 1.0227 29 1 -0.3634 0.8358 -0.5978 30 1 -0.3633 -0.9357 -0.4251 31 1 -0.5286 2.0844 1.0691 32 1 -1.0755 4.5627 0.4214 33 1 3.9231 3.9044 -0.7864 34 1 3.2932 2.9090 -2.1247 35 1 3.9362 5.3140 -2.7522 36 1 2.2771 4.8292 -3.1839 37 1 2.9911 6.2581 -0.5866 38 1 2.4590 7.1060 -2.0582 39 1 0.3200 5.9409 -2.0428 40 1 0.5969 6.5982 -0.4099 41 1 0.6850 -2.0435 -1.3862 42 1 2.3368 -1.9429 -2.0824 43 1 3.1264 -3.8090 -0.7805 44 1 1.4522 -4.3233 -1.1517 45 1 3.0115 -5.5064 -0.1360 46 1 0.8541 -1.7945 1.6220 47 1 2.5830 -2.0212 2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033159263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:51 Heat of formation + Delta-G solvation = 44.957679 kcal Electronic energy + Delta-G solvation = -27075.017257 eV Core-core repulsion = 23452.339799 eV Total energy + Delta-G solvation = -3622.677458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75078 -39.43649 -37.30075 -36.23910 -34.72226 -32.86883 -32.11486 -29.76237 -29.13182 -28.24142 -27.36173 -26.33286 -24.55286 -24.25393 -22.76694 -21.35624 -20.33207 -20.14272 -19.09686 -18.27612 -17.53143 -17.34518 -16.34592 -15.89084 -15.39308 -14.87587 -14.62882 -14.52760 -14.28435 -14.09187 -13.89279 -13.67492 -13.63013 -13.16413 -13.03199 -12.84793 -12.66935 -12.32179 -12.15049 -11.87827 -11.71391 -11.51090 -11.44795 -11.30753 -11.15249 -10.94473 -10.71391 -10.64763 -10.35858 -9.99106 -9.95040 -9.61939 -9.54716 -8.63500 -8.35503 -8.20826 -8.10980 -6.89847 -6.14643 -2.97456 1.83863 2.36887 2.57164 3.34283 3.53177 3.55815 3.58742 3.76216 4.08245 4.24035 4.34412 4.49708 4.63406 4.74100 4.84521 4.92966 5.02452 5.07033 5.26014 5.31514 5.34579 5.37278 5.41277 5.43567 5.48156 5.54166 5.64557 5.69991 5.75994 5.80201 5.83850 5.88271 5.95510 6.05168 6.10616 6.23585 6.44147 6.62433 6.69440 6.71680 6.92463 6.99878 7.06660 7.07890 7.12491 7.77817 7.83936 8.54600 8.56041 9.06577 9.90839 10.45234 11.26778 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032413 B = 0.002749 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.637826 B =10181.852327 C =10669.295507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.590 3.410 4 O -0.552 6.552 5 C -0.222 4.222 6 C -0.167 4.167 7 C -0.019 4.019 8 N -0.447 5.447 9 C 0.099 3.901 10 C -0.054 4.054 11 C -0.127 4.127 12 C -0.136 4.136 13 C 0.104 3.896 14 C 0.129 3.871 15 H 0.104 0.896 16 C -0.144 4.144 17 C 0.145 3.855 18 N -0.603 5.603 19 C -0.346 4.346 20 H 0.070 0.930 21 C -0.026 4.026 22 N -0.915 5.915 23 Si 1.067 2.933 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.295 1.295 27 C 0.133 3.867 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.025 0.975 44 H 0.057 0.943 45 H 0.270 0.730 46 H 0.030 0.970 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 27.467 -6.128 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.327 5.327 3 C 0.380 3.620 4 O -0.431 6.431 5 C -0.232 4.232 6 C -0.191 4.191 7 C -0.145 4.145 8 N -0.124 5.124 9 C -0.017 4.017 10 C -0.092 4.092 11 C -0.165 4.165 12 C -0.174 4.174 13 C -0.017 4.017 14 C 0.026 3.974 15 H 0.122 0.878 16 C -0.183 4.183 17 C 0.019 3.981 18 N -0.331 5.331 19 C -0.473 4.473 20 H 0.088 0.912 21 C -0.228 4.228 22 N -0.556 5.556 23 Si 0.898 3.102 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.222 1.222 27 C 0.006 3.994 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.178 26.115 -6.267 27.351 hybrid contribution 0.156 1.649 0.406 1.706 sum -5.022 27.764 -5.860 28.817 Atomic orbital electron populations 1.21953 0.79850 1.03220 1.01470 1.47594 1.06947 1.05436 1.72721 1.17432 0.86331 0.82673 0.75607 1.90740 1.13791 1.87440 1.51175 1.19973 0.98083 0.94247 1.10886 1.22206 0.96030 0.95703 1.05187 1.21615 0.94439 0.95972 1.02451 1.43870 1.15654 1.11058 1.41859 1.20158 0.92172 0.87913 1.01436 1.20416 0.92476 0.98585 0.97735 1.21705 1.02159 0.94498 0.98098 1.21924 0.94227 0.99677 1.01532 1.22079 0.98843 0.81338 0.99438 1.22150 0.97279 0.81643 0.96351 0.87830 1.23237 1.01144 0.97130 0.96835 1.21577 0.97867 0.92998 0.85701 1.44568 1.81948 1.01623 1.04938 1.19699 1.44723 0.86159 0.96745 0.91220 1.25688 0.99817 0.96890 1.00406 1.70852 1.13795 1.34843 1.36145 0.83442 0.75868 0.75637 0.75303 1.21219 1.22079 1.22246 1.21499 0.98202 0.85741 0.93987 0.92842 0.90703 0.90682 0.83342 0.81842 0.89184 0.89247 0.90381 0.91375 0.90545 0.89598 0.89961 0.89457 0.91136 0.91636 0.95760 0.92491 0.91799 0.95182 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 7.76 59.84 0.46 1.54 16 2 N -0.60 -10.11 2.88 -173.16 -0.50 -10.61 16 3 C 0.59 10.31 7.51 -12.59 -0.09 10.22 16 4 O -0.55 -11.27 15.88 5.25 0.08 -11.19 16 5 C -0.22 -3.19 5.51 -103.48 -0.57 -3.76 16 6 C -0.17 -1.95 8.75 -37.46 -0.33 -2.27 16 7 C -0.02 -0.18 11.40 -16.83 -0.19 -0.37 16 8 N -0.45 -4.27 3.11 -111.80 -0.35 -4.61 16 9 C 0.10 1.21 6.56 -81.64 -0.54 0.67 16 10 C -0.05 -0.57 5.54 -27.53 -0.15 -0.73 16 11 C -0.13 -0.87 5.97 -26.44 -0.16 -1.02 16 12 C -0.14 -0.72 5.94 -26.47 -0.16 -0.88 16 13 C 0.10 0.59 6.90 -3.58 -0.02 0.57 16 14 C 0.13 2.54 3.34 -66.09 -0.22 2.32 16 15 H 0.10 2.19 7.01 -51.93 -0.36 1.82 16 16 C -0.14 -2.77 6.60 -24.46 -0.16 -2.93 16 17 C 0.14 3.48 5.17 -2.41 -0.01 3.47 16 18 N -0.60 -15.95 3.37 -169.93 -0.57 -16.52 16 19 C -0.35 -10.11 10.01 -15.06 -0.15 -10.26 16 20 H 0.07 2.04 8.03 -52.48 -0.42 1.61 16 21 C -0.03 -0.77 4.96 -17.43 -0.09 -0.86 16 22 N -0.91 -28.29 12.95 55.49 0.72 -27.57 16 23 Si 1.07 25.93 30.04 -169.99 -5.11 20.82 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.13 3.00 6.88 -3.06 -0.02 2.98 16 28 H 0.05 0.69 7.26 -51.93 -0.38 0.31 16 29 H 0.07 0.90 5.84 -51.93 -0.30 0.59 16 30 H 0.07 1.08 6.13 -51.93 -0.32 0.76 16 31 H 0.15 1.55 6.34 -52.49 -0.33 1.22 16 32 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 1.27 6.14 -51.93 -0.32 0.95 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.02 0.62 7.08 -51.93 -0.37 0.26 16 44 H 0.06 1.48 7.47 -51.93 -0.39 1.09 16 45 H 0.27 8.33 5.74 -40.82 -0.23 8.10 16 46 H 0.03 0.66 7.07 -51.93 -0.37 0.30 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -35.65 361.90 -9.91 -45.56 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.24 Total: -0.02 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.40 Total: -1.31 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.70 Total: -59.32 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.11 Total: 20.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.65 -9.91 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033159263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.514 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds