Wall clock time and date at job start Tue Mar 31 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99762 * 2 1 4 4 O 1.21629 * 119.99693 * 175.79217 * 3 2 1 5 5 C 1.47259 * 120.00165 * 355.78756 * 3 2 1 6 6 C 1.46756 * 126.96656 * 35.10142 * 5 3 2 7 7 C 1.34501 * 106.36528 * 179.97438 * 6 5 3 8 8 N 1.36430 * 109.00918 * 0.02562 * 7 6 5 9 9 C 1.35213 * 109.89989 * 359.77675 * 8 7 6 10 10 C 1.50999 * 124.54528 * 180.20059 * 9 8 7 11 11 C 1.53390 * 108.24939 * 344.47545 * 10 9 8 12 12 C 1.53163 * 109.04005 * 48.48200 * 11 10 9 13 13 C 1.47018 * 126.00911 * 180.02562 * 8 7 6 14 14 C 1.46503 * 120.00166 * 180.02562 * 2 1 3 15 15 H 1.09001 * 110.77897 * 178.21153 * 14 2 1 16 16 C 1.55159 * 110.71877 * 54.97469 * 14 2 1 17 17 C 1.55129 * 101.48487 * 205.96672 * 16 14 2 18 18 N 1.47428 * 104.72181 * 37.29676 * 17 16 14 19 19 C 1.36928 * 125.64762 * 155.81554 * 18 17 16 20 20 H 1.08005 * 120.00159 * 185.31141 * 19 18 17 21 21 C 1.38812 * 120.00212 * 5.30841 * 19 18 17 22 22 N 1.31616 * 120.00007 * 34.93415 * 21 19 18 23 23 Si 1.86802 * 120.00180 * 214.93187 * 21 19 18 24 24 H 1.48501 * 109.47170 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47043 * 300.00070 * 23 21 19 26 26 H 1.48500 * 109.47158 * 60.00030 * 23 21 19 27 27 C 1.47021 * 108.70260 * 335.55109 * 18 17 16 28 28 H 1.08994 * 109.47313 * 275.56639 * 1 2 3 29 29 H 1.08998 * 109.47687 * 35.57176 * 1 2 3 30 30 H 1.09007 * 109.46661 * 155.56849 * 1 2 3 31 31 H 1.07998 * 126.81751 * 359.92023 * 6 5 3 32 32 H 1.08000 * 125.49377 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.70868 * 104.16543 * 10 9 8 34 34 H 1.08998 * 109.70393 * 224.78584 * 10 9 8 35 35 H 1.09001 * 109.54704 * 168.35188 * 11 10 9 36 36 H 1.09006 * 109.54708 * 288.61424 * 11 10 9 37 37 H 1.08998 * 109.46253 * 50.44797 * 12 11 10 38 38 H 1.09003 * 109.46053 * 170.42144 * 12 11 10 39 39 H 1.09000 * 109.56257 * 282.25825 * 13 8 7 40 40 H 1.08995 * 109.56647 * 42.59013 * 13 8 7 41 41 H 1.08992 * 111.00774 * 324.21028 * 16 14 2 42 42 H 1.09006 * 111.00309 * 88.02153 * 16 14 2 43 43 H 1.09001 * 110.49862 * 278.45485 * 17 16 14 44 44 H 1.09000 * 110.33926 * 156.05994 * 17 16 14 45 45 H 0.97003 * 119.99798 * 355.37722 * 22 21 19 46 46 H 1.09003 * 109.88161 * 120.70022 * 27 18 17 47 47 H 1.08995 * 109.88293 * 241.71795 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3526 1.1686 0.0773 5 6 1.4055 2.4408 -0.0937 6 6 0.0934 2.7485 0.4874 7 6 -0.1811 4.0214 0.1506 8 7 0.8525 4.5184 -0.5883 9 6 1.8097 3.5745 -0.7339 10 6 3.1012 3.7744 -1.4903 11 6 2.9599 5.0310 -2.3585 12 6 2.4034 6.1711 -1.5004 13 6 0.9405 5.8746 -1.1490 14 6 2.1975 -1.2687 -0.0006 15 1 3.2730 -1.0943 -0.0323 16 6 1.7507 -2.1601 -1.1894 17 6 2.0692 -3.5787 -0.6486 18 7 1.7325 -3.5174 0.7854 19 6 1.4006 -4.5867 1.5736 20 1 1.0863 -4.4280 2.5947 21 6 1.4679 -5.8747 1.0604 22 7 2.4077 -6.1898 0.1946 23 14 0.2246 -7.1608 1.5987 24 1 0.5120 -8.4453 0.9112 25 1 0.3177 -7.3548 3.0681 26 1 -1.1438 -6.7049 1.2453 27 6 1.8183 -2.1188 1.2304 28 1 -0.3633 0.0997 1.0227 29 1 -0.3634 0.8358 -0.5978 30 1 -0.3633 -0.9357 -0.4251 31 1 -0.5286 2.0844 1.0691 32 1 -1.0755 4.5627 0.4214 33 1 3.9231 3.9044 -0.7864 34 1 3.2932 2.9090 -2.1247 35 1 3.9362 5.3140 -2.7522 36 1 2.2771 4.8292 -3.1839 37 1 2.9911 6.2581 -0.5866 38 1 2.4590 7.1060 -2.0582 39 1 0.3200 5.9409 -2.0428 40 1 0.5969 6.5982 -0.4099 41 1 0.6850 -2.0435 -1.3862 42 1 2.3368 -1.9429 -2.0824 43 1 3.1264 -3.8090 -0.7805 44 1 1.4522 -4.3233 -1.1517 45 1 3.0115 -5.5064 -0.1360 46 1 0.8541 -1.7945 1.6220 47 1 2.5830 -2.0212 2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033159263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:50 Heat of formation + Delta-G solvation = 23.313283 kcal Electronic energy + Delta-G solvation = -27075.955828 eV Core-core repulsion = 23452.339799 eV Total energy + Delta-G solvation = -3623.616029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56676 -40.85846 -39.01516 -36.90566 -36.29467 -34.26091 -33.46303 -31.18230 -30.44236 -29.55452 -28.54791 -27.66501 -26.32795 -25.14277 -23.89133 -22.18770 -22.05961 -21.50320 -20.34738 -19.67837 -19.18244 -18.38768 -17.67677 -16.67053 -16.56455 -16.21238 -16.03230 -15.80001 -15.42827 -15.20717 -15.09715 -15.03219 -14.68078 -14.46295 -14.35214 -14.23009 -13.86007 -13.70396 -13.54934 -13.13541 -12.77674 -12.64754 -12.53574 -12.48784 -12.42429 -12.39752 -11.98015 -11.88010 -11.85930 -11.74975 -11.71005 -11.70697 -10.94304 -10.40029 -9.70739 -9.44687 -9.08755 -9.07495 -8.48107 -5.27203 0.80954 1.54166 1.57512 1.66488 1.77649 1.86335 2.13244 2.34520 2.62713 3.14499 3.47442 3.58000 3.63401 3.73058 3.78491 3.80134 3.84445 3.94647 4.12381 4.23913 4.28385 4.33725 4.38963 4.39188 4.45078 4.46410 4.59606 4.72036 4.75198 4.79550 4.83696 4.85309 4.92054 4.96478 4.98435 4.99262 5.02240 5.10777 5.18729 5.21675 5.26443 5.53354 5.63369 5.81703 6.12197 6.27731 6.38808 6.49712 6.82661 7.21094 7.69545 8.25824 8.94307 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032413 B = 0.002749 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.637826 B =10181.852327 C =10669.295507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.585 3.415 4 O -0.595 6.595 5 C -0.260 4.260 6 C -0.186 4.186 7 C -0.001 4.001 8 N -0.441 5.441 9 C 0.093 3.907 10 C -0.057 4.057 11 C -0.121 4.121 12 C -0.133 4.133 13 C 0.096 3.904 14 C 0.144 3.856 15 H 0.083 0.917 16 C -0.123 4.123 17 C 0.148 3.852 18 N -0.622 5.622 19 C -0.361 4.361 20 H 0.064 0.936 21 C -0.077 4.077 22 N -0.941 5.941 23 Si 1.123 2.877 24 H -0.291 1.291 25 H -0.276 1.276 26 H -0.277 1.277 27 C 0.135 3.865 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.156 0.844 32 H 0.204 0.796 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.003 0.997 44 H 0.035 0.965 45 H 0.256 0.744 46 H 0.042 0.958 47 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 30.544 -6.666 32.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C 0.377 3.623 4 O -0.477 6.477 5 C -0.270 4.270 6 C -0.210 4.210 7 C -0.127 4.127 8 N -0.117 5.117 9 C -0.025 4.025 10 C -0.095 4.095 11 C -0.158 4.158 12 C -0.170 4.170 13 C -0.023 4.023 14 C 0.039 3.961 15 H 0.101 0.899 16 C -0.162 4.162 17 C 0.022 3.978 18 N -0.350 5.350 19 C -0.488 4.488 20 H 0.082 0.918 21 C -0.273 4.273 22 N -0.584 5.584 23 Si 0.946 3.054 24 H -0.217 1.217 25 H -0.201 1.201 26 H -0.203 1.203 27 C 0.008 3.992 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.174 0.826 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -8.041 29.259 -6.803 31.097 hybrid contribution 1.088 0.804 0.605 1.482 sum -6.953 30.064 -6.199 31.474 Atomic orbital electron populations 1.22123 0.77621 1.03920 1.02596 1.47613 1.08171 1.04207 1.72639 1.18017 0.86053 0.83738 0.74475 1.90702 1.15780 1.88080 1.53168 1.19902 0.99863 0.93461 1.13783 1.22340 0.95159 0.97226 1.06265 1.22200 0.94950 0.95237 1.00336 1.44210 1.14660 1.11938 1.40869 1.20300 0.92996 0.88115 1.01052 1.20406 0.91610 0.99869 0.97651 1.21689 1.03227 0.93201 0.97719 1.21949 0.93822 1.00141 1.01129 1.22484 0.99435 0.79486 1.00924 1.21716 0.96628 0.82776 0.95006 0.89872 1.23088 1.02654 0.93375 0.97047 1.21487 0.96044 0.95398 0.84833 1.44834 1.81879 1.02470 1.05847 1.19966 1.44419 0.87367 0.97094 0.91805 1.27220 1.00434 0.99448 1.00152 1.70976 1.15049 1.34609 1.37809 0.82743 0.73877 0.72860 0.75874 1.21660 1.20133 1.20282 1.21550 0.97982 0.84744 0.94895 0.91844 0.88408 0.91079 0.82611 0.77882 0.90740 0.91399 0.89257 0.90870 0.91560 0.86513 0.87901 0.86941 0.89254 0.89508 0.97939 0.94704 0.93246 0.94000 0.97934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.08 7.76 127.77 0.99 3.07 16 2 N -0.60 -20.35 2.88 -820.01 -2.36 -22.72 16 3 C 0.58 21.01 7.51 86.61 0.65 21.66 16 4 O -0.59 -25.67 15.88 -4.12 -0.07 -25.73 16 5 C -0.26 -7.36 5.51 -19.12 -0.11 -7.47 16 6 C -0.19 -3.95 8.75 23.64 0.21 -3.74 16 7 C 0.00 -0.01 11.40 83.12 0.95 0.94 16 8 N -0.44 -7.03 3.11 -507.63 -1.58 -8.61 16 9 C 0.09 2.19 6.56 41.69 0.27 2.46 16 10 C -0.06 -1.22 5.54 30.07 0.17 -1.06 16 11 C -0.12 -1.42 5.97 30.78 0.18 -1.24 16 12 C -0.13 -0.96 5.94 30.77 0.18 -0.78 16 13 C 0.10 0.67 6.90 86.40 0.60 1.27 16 14 C 0.14 5.80 3.34 46.18 0.15 5.95 16 15 H 0.08 3.71 7.01 -2.39 -0.02 3.70 16 16 C -0.12 -4.73 6.60 32.06 0.21 -4.52 16 17 C 0.15 7.40 5.17 86.93 0.45 7.85 16 18 N -0.62 -33.96 3.37 -691.54 -2.33 -36.29 16 19 C -0.36 -21.55 10.01 84.03 0.84 -20.70 16 20 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 21 C -0.08 -4.55 4.96 84.86 0.42 -4.13 16 22 N -0.94 -59.90 12.95 21.65 0.28 -59.62 16 23 Si 1.12 52.46 30.04 68.60 2.06 54.53 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.13 6.29 6.88 86.73 0.60 6.89 16 28 H 0.06 1.55 7.26 -2.39 -0.02 1.53 16 29 H 0.10 2.15 5.84 -2.39 -0.01 2.14 16 30 H 0.07 1.93 6.13 -2.38 -0.01 1.92 16 31 H 0.16 2.92 6.34 -2.91 -0.02 2.90 16 32 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.81 8.12 -2.38 -0.02 0.79 16 37 H 0.07 0.65 8.11 -2.39 -0.02 0.63 16 38 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.09 3.13 6.14 -2.39 -0.01 3.11 16 42 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 43 H 0.00 0.16 7.08 -2.39 -0.02 0.14 16 44 H 0.03 1.87 7.47 -2.39 -0.02 1.85 16 45 H 0.26 16.57 5.74 -92.71 -0.53 16.04 16 46 H 0.04 1.86 7.07 -2.39 -0.02 1.84 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -81.67 361.90 3.97 -77.70 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.20 Total: 14.29 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.77 Total: 6.46 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.99 Total: -127.24 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.07 Total: -25.73 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 2.06 Total: 54.53 kcal Total: -81.67 3.97 -77.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033159263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.017 kcal (2) G-P(sol) polarization free energy of solvation -81.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds