Wall clock time and date at job start Tue Mar 31 2020 11:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99647 * 2 1 4 4 O 1.21700 * 119.99571 * 180.81881 * 3 2 1 5 5 C 1.46672 * 120.00220 * 0.81382 * 3 2 1 6 6 C 1.38051 * 126.20340 * 168.97017 * 5 3 2 7 7 C 1.39253 * 106.97750 * 179.97438 * 6 5 3 8 8 C 1.35962 * 108.03503 * 0.06158 * 7 6 5 9 9 N 1.35111 * 108.76878 * 359.89493 * 8 7 6 10 10 H 0.96999 * 125.68428 * 180.10692 * 9 8 7 11 11 C 1.51032 * 123.84831 * 179.80962 * 8 7 6 12 12 C 1.53320 * 108.40930 * 343.33455 * 11 8 7 13 13 C 1.53109 * 109.52994 * 50.17158 * 12 11 8 14 14 C 1.50835 * 127.70597 * 180.08887 * 7 6 5 15 15 C 1.46496 * 120.00320 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.64427 * 181.68429 * 15 2 1 17 17 C 1.55157 * 110.72146 * 305.02655 * 15 2 1 18 18 C 1.54907 * 101.58111 * 153.86023 * 17 15 2 19 19 N 1.47425 * 104.83569 * 322.98975 * 18 17 15 20 20 C 1.36930 * 125.64760 * 204.09032 * 19 18 17 21 21 H 1.08006 * 119.99759 * 173.21992 * 20 19 18 22 22 C 1.38805 * 120.00509 * 353.22268 * 20 19 18 23 23 N 1.31622 * 120.00117 * 4.47449 * 22 20 19 24 24 Si 1.86805 * 120.00428 * 184.47631 * 22 20 19 25 25 H 1.48495 * 109.47200 * 94.99780 * 24 22 20 26 26 H 1.48500 * 109.47029 * 215.00142 * 24 22 20 27 27 H 1.48505 * 109.46753 * 334.99530 * 24 22 20 28 28 C 1.47024 * 108.69969 * 24.12829 * 19 18 17 29 29 H 1.09001 * 109.47564 * 83.26719 * 1 2 3 30 30 H 1.08996 * 109.46972 * 203.26969 * 1 2 3 31 31 H 1.09005 * 109.47111 * 323.26393 * 1 2 3 32 32 H 1.07997 * 126.51360 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.67702 * 223.60497 * 11 8 7 34 34 H 1.08992 * 109.67372 * 103.06151 * 11 8 7 35 35 H 1.09003 * 109.46209 * 290.15105 * 12 11 8 36 36 H 1.09000 * 109.46065 * 170.18624 * 12 11 8 37 37 H 1.08994 * 109.47264 * 49.59216 * 13 12 11 38 38 H 1.09000 * 109.47384 * 169.59897 * 13 12 11 39 39 H 1.08997 * 109.68142 * 43.79110 * 14 7 6 40 40 H 1.09002 * 109.68487 * 283.23688 * 14 7 6 41 41 H 1.08999 * 111.00264 * 271.93940 * 17 15 2 42 42 H 1.08996 * 111.00318 * 35.78936 * 17 15 2 43 43 H 1.09003 * 110.36751 * 204.14719 * 18 17 15 44 44 H 1.08999 * 110.45737 * 81.88009 * 18 17 15 45 45 H 0.96995 * 120.00395 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.88252 * 239.52037 * 28 19 18 47 47 H 1.09001 * 109.88063 * 118.35743 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3557 1.1673 -0.0151 5 6 1.4055 2.4374 0.0180 6 6 1.9473 3.6887 0.2334 7 6 0.8992 4.6030 0.1645 8 6 -0.2454 3.9131 -0.0854 9 7 0.0509 2.5981 -0.1776 10 1 -0.5840 1.8859 -0.3523 11 6 -1.6033 4.5591 -0.2262 12 6 -1.5295 5.9739 0.3601 13 6 -0.3228 6.7097 -0.2288 14 6 0.9691 6.1007 0.3297 15 6 2.1975 -1.2686 0.0006 16 1 3.2726 -1.0916 0.0305 17 6 1.7507 -2.1600 1.1893 18 6 2.0638 -3.5779 0.6497 19 7 1.7324 -3.5173 -0.7855 20 6 1.4004 -4.5866 -1.5738 21 1 1.0675 -4.4266 -2.5887 22 6 1.4917 -5.8762 -1.0686 23 7 1.8121 -6.0674 0.1937 24 14 1.1598 -7.3406 -2.1799 25 1 2.4434 -7.8454 -2.7301 26 1 0.4995 -8.4162 -1.3975 27 1 0.2726 -6.9241 -3.2956 28 6 1.8182 -2.1186 -1.2304 29 1 -0.3634 0.1205 -1.0206 30 1 -0.3633 -0.9440 0.4060 31 1 -0.3633 0.8236 0.6147 32 1 2.9866 3.9156 0.4199 33 1 -2.3458 3.9749 0.3174 34 1 -1.8769 4.6123 -1.2799 35 1 -1.4246 5.9131 1.4433 36 1 -2.4418 6.5171 0.1136 37 1 -0.3315 6.6112 -1.3143 38 1 -0.3735 7.7646 0.0408 39 1 1.8261 6.4909 -0.2192 40 1 1.0652 6.3494 1.3866 41 1 2.3373 -1.9434 2.0821 42 1 0.6850 -2.0435 1.3861 43 1 1.4431 -4.3204 1.1514 44 1 3.1195 -3.8128 0.7857 45 1 1.8763 -6.9686 0.5467 46 1 0.8541 -1.7944 -1.6220 47 1 2.5848 -2.0205 -1.9991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033565008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:39 Heat of formation + Delta-G solvation = 47.553418 kcal Electronic energy + Delta-G solvation = -26765.545820 eV Core-core repulsion = 23142.980922 eV Total energy + Delta-G solvation = -3622.564898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85820 -39.53866 -37.33532 -36.55494 -34.92960 -32.48066 -32.12326 -29.83089 -29.19785 -28.81228 -27.67019 -26.71722 -24.84907 -23.90475 -22.32491 -21.61001 -20.29506 -20.18665 -19.32545 -18.82358 -17.46522 -17.00187 -16.49287 -15.78567 -15.44389 -15.05559 -14.73295 -14.21856 -14.17227 -14.08424 -13.90706 -13.80355 -13.28674 -13.18269 -13.09874 -12.69389 -12.55215 -12.51960 -12.15257 -11.93904 -11.89888 -11.56682 -11.16207 -11.08007 -11.00473 -10.92595 -10.84794 -10.76725 -10.49049 -10.13816 -9.88054 -9.81771 -9.65307 -8.90347 -8.67994 -8.48417 -8.00569 -6.87920 -5.73480 -3.13134 1.45434 2.54912 2.87395 3.12104 3.37220 3.42299 3.44209 3.45136 4.39376 4.45536 4.50722 4.56521 4.57520 4.82897 4.89458 5.05407 5.13639 5.21641 5.26819 5.27936 5.36867 5.39326 5.44425 5.47582 5.53601 5.57268 5.63286 5.68046 5.71569 5.83242 5.85282 6.02728 6.05984 6.11244 6.15647 6.30757 6.49026 6.51243 6.65332 6.71968 6.84001 6.97134 7.26739 7.46025 7.50596 7.56333 7.77430 8.24073 8.28361 9.15739 9.76381 10.41614 11.33345 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.002568 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.037764 B =10901.120119 C =11325.646021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.600 5.600 3 C 0.587 3.413 4 O -0.532 6.532 5 C -0.047 4.047 6 C -0.102 4.102 7 C -0.176 4.176 8 C 0.040 3.960 9 N -0.537 5.537 10 H 0.420 0.580 11 C -0.053 4.053 12 C -0.112 4.112 13 C -0.120 4.120 14 C -0.046 4.046 15 C 0.127 3.873 16 H 0.107 0.893 17 C -0.154 4.154 18 C 0.162 3.838 19 N -0.602 5.602 20 C -0.226 4.226 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.130 3.870 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.020 0.980 45 H 0.253 0.747 46 H 0.025 0.975 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 24.042 2.064 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.332 5.332 3 C 0.376 3.624 4 O -0.409 6.409 5 C -0.160 4.160 6 C -0.128 4.128 7 C -0.182 4.182 8 C -0.078 4.078 9 N -0.140 5.140 10 H 0.266 0.734 11 C -0.091 4.091 12 C -0.150 4.150 13 C -0.157 4.157 14 C -0.084 4.084 15 C 0.024 3.976 16 H 0.125 0.875 17 C -0.193 4.193 18 C 0.037 3.963 19 N -0.329 5.329 20 C -0.354 4.354 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.003 3.997 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.015 23.599 2.023 25.004 hybrid contribution -0.474 -1.260 -0.714 1.524 sum -8.489 22.338 1.309 23.933 Atomic orbital electron populations 1.22134 0.81096 1.04268 1.01146 1.47742 1.06302 1.06227 1.72892 1.17126 0.86785 0.81867 0.76651 1.90823 1.12536 1.86561 1.50960 1.20420 0.82708 0.95387 1.17463 1.20970 0.99199 0.89601 1.03025 1.19255 0.92029 0.95547 1.11399 1.20514 0.97005 0.83343 1.06983 1.42946 1.08185 1.07959 1.54911 0.73387 1.20300 0.90947 0.95982 1.01882 1.21509 0.98576 0.94083 1.00836 1.21596 0.94354 0.99046 1.00708 1.20043 0.97671 0.89804 1.00863 1.22300 0.97280 0.80892 0.97097 0.87501 1.23423 1.00527 0.98850 0.96539 1.21740 0.99045 0.91222 0.84331 1.44429 1.81174 1.00824 1.06459 1.19049 1.37379 0.84092 0.94912 0.90499 1.24822 1.01635 0.97353 0.96609 1.69858 1.54571 1.20209 1.12179 0.86066 0.77721 0.82363 0.79408 1.21543 1.21692 1.20646 1.21517 0.97881 0.86332 0.93974 0.92338 0.88653 0.91381 0.83659 0.90740 0.90302 0.91374 0.91231 0.91730 0.91622 0.91133 0.91343 0.91821 0.91784 0.88326 0.96197 0.93623 0.95732 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 7.60 59.85 0.45 1.14 16 2 N -0.60 -9.53 2.88 -173.38 -0.50 -10.03 16 3 C 0.59 9.90 7.64 -12.85 -0.10 9.80 16 4 O -0.53 -10.76 16.27 5.19 0.08 -10.68 16 5 C -0.05 -0.66 6.65 -81.85 -0.54 -1.21 16 6 C -0.10 -1.35 10.64 -39.27 -0.42 -1.77 16 7 C -0.18 -1.94 5.91 -105.00 -0.62 -2.56 16 8 C 0.04 0.40 7.02 -81.80 -0.57 -0.18 16 9 N -0.54 -5.83 5.03 -5.50 -0.03 -5.86 16 10 H 0.42 3.71 4.95 -40.82 -0.20 3.51 16 11 C -0.05 -0.36 6.30 -27.56 -0.17 -0.53 16 12 C -0.11 -0.66 5.89 -26.51 -0.16 -0.81 16 13 C -0.12 -0.76 5.90 -26.49 -0.16 -0.92 16 14 C -0.05 -0.38 6.28 -27.63 -0.17 -0.55 16 15 C 0.13 2.40 3.36 -66.10 -0.22 2.18 16 16 H 0.11 2.19 6.99 -51.93 -0.36 1.83 16 17 C -0.15 -2.92 6.59 -24.58 -0.16 -3.09 16 18 C 0.16 3.90 5.71 -2.53 -0.01 3.88 16 19 N -0.60 -15.36 3.39 -170.07 -0.58 -15.93 16 20 C -0.23 -6.26 10.26 -15.06 -0.15 -6.42 16 21 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.63 10.21 55.49 0.57 -26.06 16 24 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.13 2.78 6.88 -3.06 -0.02 2.76 16 29 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 30 H 0.09 1.21 6.15 -51.93 -0.32 0.89 16 31 H 0.07 0.66 5.22 -51.93 -0.27 0.39 16 32 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.13 6.16 -51.93 -0.32 0.81 16 43 H 0.10 2.63 6.20 -51.93 -0.32 2.31 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.50 7.09 -51.93 -0.37 0.14 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -32.73 360.92 -10.35 -43.08 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.18 Total: 1.75 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.13 Total: 1.40 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.54 Total: -57.88 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.73 -10.35 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033565008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.630 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds