Wall clock time and date at job start Tue Mar 31 2020 11:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99647 * 2 1 4 4 O 1.21700 * 119.99571 * 180.81881 * 3 2 1 5 5 C 1.46672 * 120.00220 * 0.81382 * 3 2 1 6 6 C 1.38051 * 126.20340 * 168.97017 * 5 3 2 7 7 C 1.39253 * 106.97750 * 179.97438 * 6 5 3 8 8 C 1.35962 * 108.03503 * 0.06158 * 7 6 5 9 9 N 1.35111 * 108.76878 * 359.89493 * 8 7 6 10 10 H 0.96999 * 125.68428 * 180.10692 * 9 8 7 11 11 C 1.51032 * 123.84831 * 179.80962 * 8 7 6 12 12 C 1.53320 * 108.40930 * 343.33455 * 11 8 7 13 13 C 1.53109 * 109.52994 * 50.17158 * 12 11 8 14 14 C 1.50835 * 127.70597 * 180.08887 * 7 6 5 15 15 C 1.46496 * 120.00320 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.64427 * 181.68429 * 15 2 1 17 17 C 1.55157 * 110.72146 * 305.02655 * 15 2 1 18 18 C 1.54907 * 101.58111 * 153.86023 * 17 15 2 19 19 N 1.47425 * 104.83569 * 322.98975 * 18 17 15 20 20 C 1.36930 * 125.64760 * 204.09032 * 19 18 17 21 21 H 1.08006 * 119.99759 * 173.21992 * 20 19 18 22 22 C 1.38805 * 120.00509 * 353.22268 * 20 19 18 23 23 N 1.31622 * 120.00117 * 4.47449 * 22 20 19 24 24 Si 1.86805 * 120.00428 * 184.47631 * 22 20 19 25 25 H 1.48495 * 109.47200 * 94.99780 * 24 22 20 26 26 H 1.48500 * 109.47029 * 215.00142 * 24 22 20 27 27 H 1.48505 * 109.46753 * 334.99530 * 24 22 20 28 28 C 1.47024 * 108.69969 * 24.12829 * 19 18 17 29 29 H 1.09001 * 109.47564 * 83.26719 * 1 2 3 30 30 H 1.08996 * 109.46972 * 203.26969 * 1 2 3 31 31 H 1.09005 * 109.47111 * 323.26393 * 1 2 3 32 32 H 1.07997 * 126.51360 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.67702 * 223.60497 * 11 8 7 34 34 H 1.08992 * 109.67372 * 103.06151 * 11 8 7 35 35 H 1.09003 * 109.46209 * 290.15105 * 12 11 8 36 36 H 1.09000 * 109.46065 * 170.18624 * 12 11 8 37 37 H 1.08994 * 109.47264 * 49.59216 * 13 12 11 38 38 H 1.09000 * 109.47384 * 169.59897 * 13 12 11 39 39 H 1.08997 * 109.68142 * 43.79110 * 14 7 6 40 40 H 1.09002 * 109.68487 * 283.23688 * 14 7 6 41 41 H 1.08999 * 111.00264 * 271.93940 * 17 15 2 42 42 H 1.08996 * 111.00318 * 35.78936 * 17 15 2 43 43 H 1.09003 * 110.36751 * 204.14719 * 18 17 15 44 44 H 1.08999 * 110.45737 * 81.88009 * 18 17 15 45 45 H 0.96995 * 120.00395 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.88252 * 239.52037 * 28 19 18 47 47 H 1.09001 * 109.88063 * 118.35743 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3557 1.1673 -0.0151 5 6 1.4055 2.4374 0.0180 6 6 1.9473 3.6887 0.2334 7 6 0.8992 4.6030 0.1645 8 6 -0.2454 3.9131 -0.0854 9 7 0.0509 2.5981 -0.1776 10 1 -0.5840 1.8859 -0.3523 11 6 -1.6033 4.5591 -0.2262 12 6 -1.5295 5.9739 0.3601 13 6 -0.3228 6.7097 -0.2288 14 6 0.9691 6.1007 0.3297 15 6 2.1975 -1.2686 0.0006 16 1 3.2726 -1.0916 0.0305 17 6 1.7507 -2.1600 1.1893 18 6 2.0638 -3.5779 0.6497 19 7 1.7324 -3.5173 -0.7855 20 6 1.4004 -4.5866 -1.5738 21 1 1.0675 -4.4266 -2.5887 22 6 1.4917 -5.8762 -1.0686 23 7 1.8121 -6.0674 0.1937 24 14 1.1598 -7.3406 -2.1799 25 1 2.4434 -7.8454 -2.7301 26 1 0.4995 -8.4162 -1.3975 27 1 0.2726 -6.9241 -3.2956 28 6 1.8182 -2.1186 -1.2304 29 1 -0.3634 0.1205 -1.0206 30 1 -0.3633 -0.9440 0.4060 31 1 -0.3633 0.8236 0.6147 32 1 2.9866 3.9156 0.4199 33 1 -2.3458 3.9749 0.3174 34 1 -1.8769 4.6123 -1.2799 35 1 -1.4246 5.9131 1.4433 36 1 -2.4418 6.5171 0.1136 37 1 -0.3315 6.6112 -1.3143 38 1 -0.3735 7.7646 0.0408 39 1 1.8261 6.4909 -0.2192 40 1 1.0652 6.3494 1.3866 41 1 2.3373 -1.9434 2.0821 42 1 0.6850 -2.0435 1.3861 43 1 1.4431 -4.3204 1.1514 44 1 3.1195 -3.8128 0.7857 45 1 1.8763 -6.9686 0.5467 46 1 0.8541 -1.7944 -1.6220 47 1 2.5848 -2.0205 -1.9991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033565008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:38 Heat of formation + Delta-G solvation = 28.513584 kcal Electronic energy + Delta-G solvation = -26766.371450 eV Core-core repulsion = 23142.980922 eV Total energy + Delta-G solvation = -3623.390527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78747 -40.84956 -38.95329 -37.25549 -36.38727 -34.16453 -33.12730 -31.34599 -30.36793 -29.81302 -29.05048 -27.98339 -26.58461 -24.96311 -23.21070 -22.42307 -22.18322 -21.34723 -20.67865 -19.61111 -18.98959 -18.54942 -17.74055 -16.92171 -16.72301 -16.52206 -16.05651 -15.68991 -15.48607 -14.88660 -14.76986 -14.63623 -14.60086 -14.44172 -14.14061 -13.98976 -13.75033 -13.50084 -13.46813 -13.23933 -13.05792 -13.00345 -12.75677 -12.63536 -12.48367 -12.22472 -12.02010 -11.87967 -11.62936 -11.51829 -11.48131 -11.30994 -11.20808 -10.77257 -9.96224 -9.69770 -8.94961 -8.89999 -7.84886 -5.27846 0.39350 1.45326 1.48060 1.56382 1.65902 1.71070 2.11798 2.29008 2.47778 3.29087 3.43011 3.66118 3.77921 3.79279 3.88526 3.91498 4.00134 4.11657 4.15195 4.20906 4.31038 4.42307 4.47858 4.49972 4.55306 4.68224 4.71299 4.73672 4.76242 4.81722 4.94838 4.98544 5.00006 5.10955 5.15787 5.24027 5.33503 5.39997 5.43050 5.45498 5.52507 5.56668 5.70742 5.86497 5.95207 6.21207 6.25822 6.47944 6.97282 7.04742 7.70282 8.35087 9.20335 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030761 B = 0.002568 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.037764 B =10901.120119 C =11325.646021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.598 5.598 3 C 0.584 3.416 4 O -0.579 6.579 5 C -0.075 4.075 6 C -0.113 4.113 7 C -0.191 4.191 8 C 0.059 3.941 9 N -0.527 5.527 10 H 0.430 0.570 11 C -0.054 4.054 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.048 4.048 15 C 0.142 3.858 16 H 0.086 0.914 17 C -0.134 4.134 18 C 0.167 3.833 19 N -0.621 5.621 20 C -0.243 4.243 21 H 0.081 0.919 22 C -0.062 4.062 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.266 1.266 28 C 0.132 3.868 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.072 0.928 44 H -0.011 1.011 45 H 0.249 0.751 46 H 0.043 0.957 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 26.168 1.552 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.329 5.329 3 C 0.376 3.624 4 O -0.459 6.459 5 C -0.187 4.187 6 C -0.140 4.140 7 C -0.197 4.197 8 C -0.061 4.061 9 N -0.131 5.131 10 H 0.278 0.722 11 C -0.092 4.092 12 C -0.149 4.149 13 C -0.155 4.155 14 C -0.086 4.086 15 C 0.037 3.963 16 H 0.104 0.896 17 C -0.173 4.173 18 C 0.041 3.959 19 N -0.347 5.347 20 C -0.371 4.371 21 H 0.099 0.901 22 C -0.256 4.256 23 N -0.596 5.596 24 Si 0.809 3.191 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.191 1.191 28 C 0.006 3.994 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.007 0.993 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -11.085 25.747 1.499 28.072 hybrid contribution 0.453 -1.806 -0.570 1.947 sum -10.631 23.941 0.930 26.212 Atomic orbital electron populations 1.22397 0.78396 1.05214 1.03013 1.47689 1.07834 1.04740 1.72607 1.17509 0.86440 0.82778 0.75696 1.90788 1.14617 1.87259 1.53248 1.19946 0.84153 0.93998 1.20648 1.21147 0.99602 0.90318 1.02917 1.19608 0.91625 0.96864 1.11553 1.21176 0.98375 0.82687 1.03839 1.42869 1.07030 1.08780 1.54413 0.72229 1.20526 0.89029 0.96396 1.03255 1.21544 0.99187 0.93596 1.00574 1.21602 0.93459 0.99962 1.00477 1.20130 0.98986 0.88086 1.01358 1.21844 0.96636 0.82043 0.95754 0.89614 1.23219 1.02033 0.95253 0.96774 1.21502 0.96538 0.93675 0.84155 1.44680 1.81017 1.02034 1.07008 1.19414 1.37208 0.85102 0.95414 0.90074 1.25668 1.01941 0.99968 0.97977 1.70080 1.55558 1.20332 1.13668 0.85024 0.77429 0.78746 0.77891 1.21793 1.21718 1.19081 1.21576 0.98216 0.84910 0.94721 0.90383 0.88939 0.88800 0.84633 0.88789 0.88819 0.91614 0.89019 0.91934 0.90022 0.91292 0.90896 0.90383 0.89733 0.90988 0.99347 0.94110 0.93935 0.96905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 7.60 127.77 0.97 2.09 16 2 N -0.60 -18.57 2.88 -820.66 -2.37 -20.93 16 3 C 0.58 19.84 7.64 86.44 0.66 20.50 16 4 O -0.58 -24.37 16.27 -4.35 -0.07 -24.45 16 5 C -0.08 -2.06 6.65 40.36 0.27 -1.79 16 6 C -0.11 -2.99 10.64 22.47 0.24 -2.75 16 7 C -0.19 -3.89 5.91 -20.11 -0.12 -4.01 16 8 C 0.06 1.00 7.02 41.63 0.29 1.30 16 9 N -0.53 -10.14 5.03 -171.30 -0.86 -11.00 16 10 H 0.43 6.17 4.95 -92.71 -0.46 5.71 16 11 C -0.05 -0.50 6.30 30.06 0.19 -0.31 16 12 C -0.11 -0.85 5.89 30.74 0.18 -0.67 16 13 C -0.12 -1.13 5.90 30.75 0.18 -0.95 16 14 C -0.05 -0.70 6.28 30.01 0.19 -0.51 16 15 C 0.14 5.39 3.36 46.18 0.16 5.54 16 16 H 0.09 3.66 6.99 -2.39 -0.02 3.64 16 17 C -0.13 -5.06 6.59 31.99 0.21 -4.85 16 18 C 0.17 8.29 5.71 86.85 0.50 8.79 16 19 N -0.62 -32.23 3.39 -691.99 -2.35 -34.58 16 20 C -0.24 -13.58 10.26 84.03 0.86 -12.72 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 23 N -0.95 -56.24 10.21 21.65 0.22 -56.02 16 24 Si 0.98 45.35 29.56 68.60 2.03 47.38 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C 0.13 5.69 6.88 86.73 0.60 6.28 16 29 H 0.08 1.40 7.68 -2.39 -0.02 1.39 16 30 H 0.09 2.10 6.15 -2.39 -0.01 2.09 16 31 H 0.09 1.54 5.22 -2.38 -0.01 1.53 16 32 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.57 8.11 -2.39 -0.02 0.55 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.08 2.87 6.16 -2.39 -0.01 2.85 16 43 H 0.07 3.98 6.20 -2.39 -0.01 3.96 16 44 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.04 1.69 7.09 -2.39 -0.02 1.67 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -73.68 360.92 2.96 -70.71 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.52 Total: 16.00 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.84 Total: 12.89 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -5.35 Total: -122.53 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.68 2.96 -70.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033565008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.226 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds