Wall clock time and date at job start Tue Mar 31 2020 11:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00206 * 2 1 4 4 C 1.39047 * 119.99829 * 180.02562 * 2 1 3 5 5 C 1.39213 * 119.93150 * 354.27690 * 4 2 1 6 6 C 1.37617 * 120.07031 * 180.02562 * 5 4 2 7 7 C 1.39788 * 119.92781 * 359.97438 * 6 5 4 8 8 C 1.47528 * 120.06814 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99618 * 222.08671 * 8 7 6 10 10 N 1.34767 * 119.99921 * 42.08470 * 8 7 6 11 11 C 1.46501 * 120.00108 * 355.75022 * 10 8 7 12 12 C 1.46504 * 119.99915 * 175.74794 * 10 8 7 13 13 H 1.08999 * 110.63901 * 1.69425 * 12 10 8 14 14 C 1.55164 * 110.86900 * 124.93595 * 12 10 8 15 15 C 1.55125 * 101.48410 * 82.77053 * 14 12 10 16 16 N 1.47425 * 104.72789 * 37.29447 * 15 14 12 17 17 C 1.36926 * 125.65359 * 155.81577 * 16 15 14 18 18 H 1.07998 * 120.00452 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99989 * 359.69526 * 17 16 15 20 20 N 1.31624 * 119.99963 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00260 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47288 * 89.99845 * 21 19 17 23 23 H 1.48499 * 109.47092 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.47016 * 329.99706 * 21 19 17 25 25 C 1.47025 * 108.69842 * 335.55358 * 16 15 14 26 26 C 1.39798 * 119.86505 * 0.25035 * 7 6 5 27 27 C 1.37610 * 119.92654 * 359.51569 * 26 7 6 28 28 H 1.08996 * 109.47124 * 185.09399 * 1 2 3 29 29 H 1.08999 * 109.46855 * 305.09337 * 1 2 3 30 30 H 1.09002 * 109.46949 * 65.09300 * 1 2 3 31 31 H 1.08992 * 109.46984 * 270.00363 * 3 2 1 32 32 H 1.09004 * 109.46563 * 29.99929 * 3 2 1 33 33 H 1.08990 * 109.47068 * 150.00023 * 3 2 1 34 34 H 1.08000 * 119.96943 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.03446 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.46941 * 271.60257 * 11 10 8 37 37 H 1.08997 * 109.47346 * 31.60516 * 11 10 8 38 38 H 1.09006 * 109.47111 * 151.61161 * 11 10 8 39 39 H 1.09005 * 110.99928 * 201.00921 * 14 12 10 40 40 H 1.08999 * 111.00286 * 324.85859 * 14 12 10 41 41 H 1.09006 * 110.49608 * 278.44915 * 15 14 12 42 42 H 1.09003 * 110.34379 * 156.05996 * 15 14 12 43 43 H 0.97001 * 120.00233 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.88199 * 120.70225 * 25 16 15 45 45 H 1.09003 * 109.88175 * 241.87443 * 25 16 15 46 46 H 1.08000 * 120.03783 * 179.74794 * 26 7 6 47 47 H 1.08002 * 119.96489 * 180.25454 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4679 -2.4060 0.1192 6 6 2.1531 -3.5995 0.1196 7 6 3.5458 -3.6041 -0.0011 8 6 4.2835 -4.8817 -0.0005 9 8 5.3219 -4.9838 0.6239 10 7 3.8065 -5.9355 -0.6920 11 6 2.5099 -5.8422 -1.3675 12 6 4.5847 -7.1744 -0.7683 13 1 5.5044 -7.0867 -0.1899 14 6 3.7447 -8.3855 -0.2832 15 6 2.9370 -8.7329 -1.5612 16 7 3.8771 -8.5017 -2.6731 17 6 3.8100 -9.0860 -3.9096 18 1 4.5501 -8.8494 -4.6596 19 6 2.7940 -9.9871 -4.1972 20 7 1.8954 -10.2801 -3.2811 21 14 2.7019 -10.7837 -5.8843 22 1 3.4824 -12.0470 -5.8784 23 1 1.2848 -11.0789 -6.2156 24 1 3.2653 -9.8584 -6.9000 25 6 4.8950 -7.5349 -2.2364 26 6 4.2385 -2.3953 -0.1165 27 6 3.5472 -1.2055 -0.1210 28 1 -0.3633 -1.0236 0.0912 29 1 -0.3633 0.5908 0.8409 30 1 -0.3633 0.4328 -0.9321 31 1 2.3792 1.5833 -1.0276 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5138 34 1 0.3919 -2.4018 0.2120 35 1 1.6154 -4.5315 0.2129 36 1 1.7189 -6.1371 -0.6779 37 1 2.3433 -4.8156 -1.6939 38 1 2.5027 -6.5045 -2.2333 39 1 4.3885 -9.2137 0.0134 40 1 3.0797 -8.0985 0.5313 41 1 2.0704 -8.0783 -1.6547 42 1 2.6243 -9.7769 -1.5397 43 1 1.1856 -10.9100 -3.4820 44 1 5.8861 -7.9831 -2.3065 45 1 4.8460 -6.6396 -2.8561 46 1 5.3148 -2.3955 -0.2057 47 1 4.0814 -0.2715 -0.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033621022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:11 Heat of formation + Delta-G solvation = 56.056391 kcal Electronic energy + Delta-G solvation = -26878.645058 eV Core-core repulsion = 23256.448876 eV Total energy + Delta-G solvation = -3622.196181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37286 -39.18199 -37.38133 -36.12523 -34.34728 -32.19585 -31.32415 -30.30722 -29.07844 -28.50876 -27.85429 -26.27106 -25.40143 -24.20986 -22.43336 -21.97528 -20.39670 -20.08146 -18.81387 -17.61445 -17.01673 -16.87278 -16.09277 -15.90536 -15.42661 -14.91889 -14.77240 -14.67553 -14.17277 -13.93900 -13.77205 -13.64486 -12.98778 -12.92319 -12.81767 -12.59866 -12.44245 -12.27594 -12.20038 -12.03328 -11.81846 -11.66473 -11.51126 -11.04213 -10.89311 -10.84438 -10.76209 -10.23773 -10.11774 -10.02214 -9.83110 -9.52054 -9.33596 -9.01505 -8.64207 -8.17461 -7.48217 -6.83734 -5.65683 -3.07610 1.18395 1.38515 2.81661 3.03161 3.38420 3.40577 3.45359 3.46734 3.88365 4.49108 4.55785 4.62840 4.82614 4.86089 4.95785 5.03338 5.21306 5.27050 5.28249 5.36770 5.45353 5.47534 5.49756 5.51670 5.54155 5.65564 5.76823 5.86505 5.95185 6.00117 6.07082 6.22650 6.31216 6.35838 6.42321 6.49728 6.61161 6.62943 6.67033 6.76946 6.93688 7.12646 7.22790 7.48445 7.62793 7.81957 7.86527 8.35711 8.52968 9.21639 9.82111 10.46951 11.37560 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002979 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.968679 B = 9397.713107 C =10138.448542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.635 5.635 3 C 0.092 3.908 4 C 0.231 3.769 5 C -0.209 4.209 6 C -0.038 4.038 7 C -0.183 4.183 8 C 0.561 3.439 9 O -0.553 6.553 10 N -0.588 5.588 11 C 0.066 3.934 12 C 0.126 3.874 13 H 0.099 0.901 14 C -0.155 4.155 15 C 0.144 3.856 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.127 3.873 26 C -0.017 4.017 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.022 0.978 42 H 0.106 0.894 43 H 0.251 0.749 44 H 0.033 0.967 45 H 0.027 0.973 46 H 0.128 0.872 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 20.774 7.983 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.346 5.346 3 C -0.051 4.051 4 C 0.128 3.872 5 C -0.231 4.231 6 C -0.057 4.057 7 C -0.188 4.188 8 C 0.350 3.650 9 O -0.433 6.433 10 N -0.319 5.319 11 C -0.077 4.077 12 C 0.022 3.978 13 H 0.117 0.883 14 C -0.194 4.194 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.000 4.000 26 C -0.037 4.037 27 C -0.230 4.230 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.146 0.854 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.125 20.740 8.166 22.507 hybrid contribution -0.243 -0.303 -0.953 1.029 sum -3.367 20.437 7.213 21.933 Atomic orbital electron populations 1.21750 0.79401 1.03412 1.01077 1.46225 1.05222 1.03325 1.79797 1.21638 0.97282 0.84848 1.01325 1.17979 0.91332 0.85722 0.92151 1.20627 0.99843 0.90850 1.11765 1.21321 0.92822 0.98114 0.93438 1.19645 0.93823 0.93457 1.11847 1.18298 0.84544 0.83440 0.78699 1.90729 1.24792 1.84011 1.43747 1.47696 1.20788 1.12983 1.50448 1.22334 0.83604 1.02811 0.98902 1.22135 0.94980 0.83007 0.97672 0.88269 1.23383 0.99610 0.96376 1.00031 1.22184 0.90075 1.03542 0.82218 1.44545 1.28492 1.48344 1.11546 1.19072 1.09181 1.18420 0.88201 0.90546 1.24766 0.97576 1.00031 0.98247 1.69795 1.16947 1.38195 1.32148 0.86082 0.76813 0.79366 0.83291 1.21648 1.21709 1.20791 1.21651 0.93436 0.93045 0.91891 1.20876 0.99710 0.90329 0.92761 1.20553 0.92049 0.98463 1.11919 0.90051 0.92568 0.92834 0.93252 0.91542 0.91143 0.85409 0.84850 0.92900 0.91539 0.88009 0.91035 0.92102 0.96055 0.87629 0.93776 0.94936 0.95517 0.85388 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.62 59.85 0.64 1.18 16 2 N -0.63 -5.39 3.39 -187.56 -0.64 -6.03 16 3 C 0.09 0.57 10.08 59.85 0.60 1.17 16 4 C 0.23 2.49 6.54 -83.86 -0.55 1.94 16 5 C -0.21 -2.29 9.29 -39.45 -0.37 -2.65 16 6 C -0.04 -0.48 7.54 -39.23 -0.30 -0.77 16 7 C -0.18 -2.70 5.13 -104.95 -0.54 -3.24 16 8 C 0.56 9.96 7.31 -12.48 -0.09 9.87 16 9 O -0.55 -11.39 16.32 5.28 0.09 -11.30 16 10 N -0.59 -10.43 2.83 -173.06 -0.49 -10.91 16 11 C 0.07 1.07 7.06 59.85 0.42 1.50 16 12 C 0.13 2.42 3.57 -66.09 -0.24 2.18 16 13 H 0.10 1.93 6.99 -51.93 -0.36 1.57 16 14 C -0.15 -3.02 6.55 -24.46 -0.16 -3.18 16 15 C 0.14 3.37 5.03 -2.41 -0.01 3.36 16 16 N -0.60 -15.05 2.98 -169.94 -0.51 -15.56 16 17 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.15 10.08 55.49 0.56 -25.59 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.13 2.73 6.25 -3.06 -0.02 2.71 16 26 C -0.02 -0.23 9.64 -39.23 -0.38 -0.61 16 27 C -0.21 -2.32 9.13 -39.45 -0.36 -2.68 16 28 H 0.08 0.49 5.28 -51.93 -0.27 0.22 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16 34 H 0.13 1.12 5.71 -52.49 -0.30 0.82 16 35 H 0.13 1.59 5.69 -52.49 -0.30 1.29 16 36 H 0.05 0.78 6.99 -51.93 -0.36 0.42 16 37 H 0.07 0.96 5.75 -51.93 -0.30 0.66 16 38 H 0.10 2.00 5.08 -51.93 -0.26 1.74 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.51 5.54 -51.93 -0.29 0.22 16 42 H 0.11 2.82 5.86 -51.93 -0.30 2.52 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 46 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.13 1.12 6.28 -52.49 -0.33 0.79 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -31.99 360.73 -8.93 -40.92 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.76 Total: 2.04 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.60 Total: 4.21 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -1.07 Total: -58.09 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.99 -8.93 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033621022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.977 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds