Wall clock time and date at job start Tue Mar 31 2020 11:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00206 * 2 1 4 4 C 1.39047 * 119.99829 * 180.02562 * 2 1 3 5 5 C 1.39213 * 119.93150 * 354.27690 * 4 2 1 6 6 C 1.37617 * 120.07031 * 180.02562 * 5 4 2 7 7 C 1.39788 * 119.92781 * 359.97438 * 6 5 4 8 8 C 1.47528 * 120.06814 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99618 * 222.08671 * 8 7 6 10 10 N 1.34767 * 119.99921 * 42.08470 * 8 7 6 11 11 C 1.46501 * 120.00108 * 355.75022 * 10 8 7 12 12 C 1.46504 * 119.99915 * 175.74794 * 10 8 7 13 13 H 1.08999 * 110.63901 * 1.69425 * 12 10 8 14 14 C 1.55164 * 110.86900 * 124.93595 * 12 10 8 15 15 C 1.55125 * 101.48410 * 82.77053 * 14 12 10 16 16 N 1.47425 * 104.72789 * 37.29447 * 15 14 12 17 17 C 1.36926 * 125.65359 * 155.81577 * 16 15 14 18 18 H 1.07998 * 120.00452 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99989 * 359.69526 * 17 16 15 20 20 N 1.31624 * 119.99963 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00260 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47288 * 89.99845 * 21 19 17 23 23 H 1.48499 * 109.47092 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.47016 * 329.99706 * 21 19 17 25 25 C 1.47025 * 108.69842 * 335.55358 * 16 15 14 26 26 C 1.39798 * 119.86505 * 0.25035 * 7 6 5 27 27 C 1.37610 * 119.92654 * 359.51569 * 26 7 6 28 28 H 1.08996 * 109.47124 * 185.09399 * 1 2 3 29 29 H 1.08999 * 109.46855 * 305.09337 * 1 2 3 30 30 H 1.09002 * 109.46949 * 65.09300 * 1 2 3 31 31 H 1.08992 * 109.46984 * 270.00363 * 3 2 1 32 32 H 1.09004 * 109.46563 * 29.99929 * 3 2 1 33 33 H 1.08990 * 109.47068 * 150.00023 * 3 2 1 34 34 H 1.08000 * 119.96943 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.03446 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.46941 * 271.60257 * 11 10 8 37 37 H 1.08997 * 109.47346 * 31.60516 * 11 10 8 38 38 H 1.09006 * 109.47111 * 151.61161 * 11 10 8 39 39 H 1.09005 * 110.99928 * 201.00921 * 14 12 10 40 40 H 1.08999 * 111.00286 * 324.85859 * 14 12 10 41 41 H 1.09006 * 110.49608 * 278.44915 * 15 14 12 42 42 H 1.09003 * 110.34379 * 156.05996 * 15 14 12 43 43 H 0.97001 * 120.00233 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.88199 * 120.70225 * 25 16 15 45 45 H 1.09003 * 109.88175 * 241.87443 * 25 16 15 46 46 H 1.08000 * 120.03783 * 179.74794 * 26 7 6 47 47 H 1.08002 * 119.96489 * 180.25454 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4679 -2.4060 0.1192 6 6 2.1531 -3.5995 0.1196 7 6 3.5458 -3.6041 -0.0011 8 6 4.2835 -4.8817 -0.0005 9 8 5.3219 -4.9838 0.6239 10 7 3.8065 -5.9355 -0.6920 11 6 2.5099 -5.8422 -1.3675 12 6 4.5847 -7.1744 -0.7683 13 1 5.5044 -7.0867 -0.1899 14 6 3.7447 -8.3855 -0.2832 15 6 2.9370 -8.7329 -1.5612 16 7 3.8771 -8.5017 -2.6731 17 6 3.8100 -9.0860 -3.9096 18 1 4.5501 -8.8494 -4.6596 19 6 2.7940 -9.9871 -4.1972 20 7 1.8954 -10.2801 -3.2811 21 14 2.7019 -10.7837 -5.8843 22 1 3.4824 -12.0470 -5.8784 23 1 1.2848 -11.0789 -6.2156 24 1 3.2653 -9.8584 -6.9000 25 6 4.8950 -7.5349 -2.2364 26 6 4.2385 -2.3953 -0.1165 27 6 3.5472 -1.2055 -0.1210 28 1 -0.3633 -1.0236 0.0912 29 1 -0.3633 0.5908 0.8409 30 1 -0.3633 0.4328 -0.9321 31 1 2.3792 1.5833 -1.0276 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5138 34 1 0.3919 -2.4018 0.2120 35 1 1.6154 -4.5315 0.2129 36 1 1.7189 -6.1371 -0.6779 37 1 2.3433 -4.8156 -1.6939 38 1 2.5027 -6.5045 -2.2333 39 1 4.3885 -9.2137 0.0134 40 1 3.0797 -8.0985 0.5313 41 1 2.0704 -8.0783 -1.6547 42 1 2.6243 -9.7769 -1.5397 43 1 1.1856 -10.9100 -3.4820 44 1 5.8861 -7.9831 -2.3065 45 1 4.8460 -6.6396 -2.8561 46 1 5.3148 -2.3955 -0.2057 47 1 4.0814 -0.2715 -0.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033621022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:11 Heat of formation + Delta-G solvation = 37.882625 kcal Electronic energy + Delta-G solvation = -26879.433131 eV Core-core repulsion = 23256.448876 eV Total energy + Delta-G solvation = -3622.984255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59123 -40.26374 -38.93535 -37.00280 -35.96010 -34.00356 -32.23737 -31.51702 -30.69792 -29.54507 -28.98473 -27.69993 -26.63855 -25.77420 -23.38143 -23.02549 -22.03815 -21.48663 -20.21361 -18.94961 -18.57119 -18.11218 -17.40402 -16.89249 -16.65803 -16.15096 -15.96866 -15.85893 -15.60650 -15.46084 -14.80789 -14.60566 -14.42412 -14.23376 -13.81914 -13.70462 -13.50645 -13.35165 -13.31728 -13.24679 -13.14722 -12.92868 -12.84397 -12.77668 -12.71825 -12.39598 -12.01354 -11.96372 -11.79359 -11.65461 -11.39990 -10.94443 -10.72284 -10.61350 -9.93356 -9.64732 -8.85563 -8.24849 -7.74010 -5.18268 0.19229 0.49170 1.49345 1.50434 1.58947 1.75365 2.04135 2.20460 2.51656 2.89773 3.35801 3.57496 3.74615 3.81762 3.90522 3.93676 4.03795 4.22089 4.28700 4.32047 4.41285 4.46466 4.51781 4.57306 4.62672 4.65579 4.67345 4.71911 4.79121 4.89908 4.91651 4.93101 4.94136 5.03723 5.10617 5.12494 5.24230 5.33509 5.47058 5.51492 5.61971 5.69327 5.76523 5.84992 6.28759 6.34083 6.44339 6.47693 7.13593 7.15661 7.79327 8.43756 9.26877 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002979 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.968679 B = 9397.713107 C =10138.448542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.634 5.634 3 C 0.084 3.916 4 C 0.235 3.765 5 C -0.210 4.210 6 C -0.038 4.038 7 C -0.213 4.213 8 C 0.562 3.438 9 O -0.589 6.589 10 N -0.590 5.590 11 C 0.076 3.924 12 C 0.136 3.864 13 H 0.100 0.900 14 C -0.139 4.139 15 C 0.152 3.848 16 N -0.618 5.618 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.274 1.274 25 C 0.129 3.871 26 C -0.026 4.026 27 C -0.209 4.209 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.018 0.982 42 H 0.072 0.928 43 H 0.247 0.753 44 H 0.033 0.967 45 H 0.022 0.978 46 H 0.122 0.878 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 23.088 8.175 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C -0.058 4.058 4 C 0.129 3.871 5 C -0.232 4.232 6 C -0.057 4.057 7 C -0.218 4.218 8 C 0.353 3.647 9 O -0.471 6.471 10 N -0.320 5.320 11 C -0.066 4.066 12 C 0.032 3.968 13 H 0.118 0.882 14 C -0.179 4.179 15 C 0.027 3.973 16 N -0.344 5.344 17 C -0.366 4.366 18 H 0.093 0.907 19 C -0.253 4.253 20 N -0.593 5.593 21 Si 0.806 3.194 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.199 1.199 25 C 0.003 3.997 26 C -0.046 4.046 27 C -0.231 4.231 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.140 0.860 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.331 23.106 8.358 24.950 hybrid contribution 0.077 -0.843 -1.003 1.312 sum -4.254 22.263 7.356 23.829 Atomic orbital electron populations 1.21950 0.78004 1.04028 1.02342 1.46552 1.06322 1.03224 1.78194 1.21839 0.97650 0.84256 1.02065 1.18156 0.91403 0.86749 0.90777 1.20869 1.01021 0.90265 1.11079 1.21359 0.91905 0.99126 0.93330 1.19483 0.94676 0.92164 1.15449 1.18785 0.84131 0.84105 0.77663 1.90694 1.26513 1.84608 1.45280 1.47720 1.21104 1.12554 1.50668 1.22265 0.83360 1.03130 0.97841 1.21892 0.95279 0.83772 0.95864 0.88224 1.23237 0.99367 0.96575 0.98697 1.21971 0.90414 1.01339 0.83560 1.44732 1.29438 1.48875 1.11396 1.19365 1.09255 1.18695 0.89300 0.90652 1.25522 0.97467 1.00712 1.01600 1.70023 1.17216 1.38502 1.33554 0.85098 0.76437 0.78311 0.79556 1.21545 1.21855 1.19881 1.21685 0.92639 0.92109 0.93310 1.20925 0.99656 0.90746 0.93238 1.20726 0.92511 0.98444 1.11444 0.89876 0.90894 0.91852 0.92661 0.89510 0.90979 0.83062 0.84415 0.91223 0.89660 0.91392 0.90735 0.90199 0.96461 0.90986 0.94274 0.94955 0.95997 0.85972 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.62 127.77 1.36 2.06 16 2 N -0.63 -8.65 3.39 -747.32 -2.53 -11.18 16 3 C 0.08 0.75 10.08 127.77 1.29 2.04 16 4 C 0.23 4.45 6.54 38.47 0.25 4.70 16 5 C -0.21 -4.08 9.29 22.36 0.21 -3.87 16 6 C -0.04 -0.90 7.54 22.50 0.17 -0.73 16 7 C -0.21 -6.17 5.13 -20.08 -0.10 -6.27 16 8 C 0.56 20.00 7.31 86.69 0.63 20.63 16 9 O -0.59 -24.59 16.32 -4.01 -0.07 -24.66 16 10 N -0.59 -20.87 2.83 -819.69 -2.32 -23.19 16 11 C 0.08 2.45 7.06 127.77 0.90 3.35 16 12 C 0.14 5.27 3.57 46.18 0.16 5.44 16 13 H 0.10 3.90 6.99 -2.39 -0.02 3.88 16 14 C -0.14 -5.43 6.55 32.06 0.21 -5.22 16 15 C 0.15 7.22 5.03 86.93 0.44 7.65 16 16 N -0.62 -31.47 2.98 -691.55 -2.06 -33.53 16 17 C -0.24 -13.18 10.27 84.04 0.86 -12.32 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 20 N -0.94 -54.49 10.08 21.65 0.22 -54.28 16 21 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 C 0.13 5.65 6.25 86.73 0.54 6.19 16 26 C -0.03 -0.67 9.64 22.50 0.22 -0.46 16 27 C -0.21 -4.27 9.13 22.36 0.20 -4.07 16 28 H 0.08 0.72 5.28 -2.39 -0.01 0.71 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.45 8.07 -2.38 -0.02 0.43 16 33 H 0.07 0.64 6.43 -2.39 -0.02 0.62 16 34 H 0.15 2.15 5.71 -2.91 -0.02 2.14 16 35 H 0.14 3.06 5.69 -2.91 -0.02 3.04 16 36 H 0.07 1.99 6.99 -2.38 -0.02 1.97 16 37 H 0.09 2.40 5.75 -2.39 -0.01 2.39 16 38 H 0.07 2.70 5.08 -2.38 -0.01 2.68 16 39 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 40 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.02 0.84 5.54 -2.38 -0.01 0.83 16 42 H 0.07 3.96 5.86 -2.39 -0.01 3.95 16 43 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.02 0.98 8.04 -2.39 -0.02 0.97 16 46 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 47 H 0.15 2.27 6.28 -2.91 -0.02 2.25 16 Total: -1.00 -69.60 360.73 4.07 -65.53 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.98 Total: 17.84 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 7.81 Total: 16.25 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.69 Total: -122.18 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.07 Total: -24.66 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.60 4.07 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033621022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.413 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds