Wall clock time and date at job start Tue Mar 31 2020 11:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99989 * 2 1 4 4 C 1.39043 * 120.00060 * 180.02562 * 2 1 3 5 5 C 1.39225 * 119.92881 * 0.02562 * 4 2 1 6 6 C 1.37614 * 120.06610 * 180.02562 * 5 4 2 7 7 C 1.39799 * 119.92978 * 359.97438 * 6 5 4 8 8 C 1.47522 * 120.06320 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00622 * 318.62482 * 8 7 6 10 10 N 1.34780 * 119.99647 * 138.62504 * 8 7 6 11 11 C 1.46504 * 119.99783 * 4.44974 * 10 8 7 12 12 C 1.46494 * 120.00101 * 184.44869 * 10 8 7 13 13 H 1.09005 * 110.88227 * 358.09560 * 12 10 8 14 14 C 1.55164 * 111.00353 * 234.22146 * 12 10 8 15 15 C 1.54327 * 102.93773 * 277.42350 * 14 12 10 16 16 N 1.47023 * 107.27307 * 337.80522 * 15 14 12 17 17 C 1.36933 * 125.64349 * 178.97536 * 16 15 14 18 18 H 1.08007 * 119.99542 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00397 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47071 * 60.00039 * 21 19 17 23 23 H 1.48499 * 109.47035 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47129 * 300.00298 * 21 19 17 25 25 C 1.47521 * 108.71513 * 358.94718 * 16 15 14 26 26 C 1.39793 * 119.86275 * 0.26575 * 7 6 5 27 27 C 1.37613 * 119.93106 * 359.47957 * 26 7 6 28 28 H 1.08992 * 109.47124 * 239.99780 * 1 2 3 29 29 H 1.09004 * 109.47020 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47244 * 119.99721 * 1 2 3 31 31 H 1.09004 * 109.47111 * 270.00217 * 3 2 1 32 32 H 1.08999 * 109.46694 * 29.99664 * 3 2 1 33 33 H 1.08994 * 109.47294 * 149.99754 * 3 2 1 34 34 H 1.07998 * 119.97075 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.02970 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46550 * 209.87730 * 11 10 8 37 37 H 1.08998 * 109.47676 * 329.87383 * 11 10 8 38 38 H 1.08998 * 109.47498 * 89.88299 * 11 10 8 39 39 H 1.09000 * 110.71870 * 35.78846 * 14 12 10 40 40 H 1.09007 * 110.71855 * 159.06567 * 14 12 10 41 41 H 1.09000 * 109.87744 * 97.22780 * 15 14 12 42 42 H 1.08999 * 109.87794 * 218.23425 * 15 14 12 43 43 H 0.96997 * 120.00747 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.37154 * 265.30636 * 25 16 15 45 45 H 1.09000 * 110.41575 * 142.95161 * 25 16 15 46 46 H 1.08001 * 120.03275 * 179.72738 * 26 7 6 47 47 H 1.07994 * 119.96439 * 180.25261 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4627 -2.4090 -0.0016 6 6 2.1479 -3.6024 -0.0016 7 6 3.5459 -3.6040 -0.0011 8 6 4.2834 -4.8817 -0.0005 9 8 3.9029 -5.8031 0.6955 10 7 5.3792 -5.0275 -0.7716 11 6 5.8945 -3.8882 -1.5351 12 6 6.0549 -6.3251 -0.8462 13 1 5.5693 -7.0540 -0.1973 14 6 7.5612 -6.1885 -0.4996 15 6 8.1820 -5.7235 -1.8338 16 7 7.2610 -6.1250 -2.9072 17 6 7.4371 -5.8799 -4.2429 18 1 6.6994 -6.2180 -4.9557 19 6 8.5634 -5.1970 -4.6807 20 7 9.4626 -4.7855 -3.8122 21 14 8.8038 -4.8634 -6.5030 22 1 7.6706 -4.0490 -7.0108 23 1 10.0757 -4.1246 -6.7073 24 1 8.8566 -6.1518 -7.2394 25 6 6.1162 -6.8361 -2.3073 26 6 4.2433 -2.3925 0.0051 27 6 3.5524 -1.2025 -0.0002 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1385 0.5138 34 1 0.3827 -2.4071 -0.0025 35 1 1.6062 -4.5367 -0.0020 36 1 6.3815 -4.2487 -2.4412 37 1 5.0699 -3.2281 -1.8039 38 1 6.6155 -3.3405 -0.9284 39 1 7.7116 -5.4393 0.2777 40 1 7.9757 -7.1498 -0.1957 41 1 8.2979 -4.6397 -1.8308 42 1 9.1520 -6.1996 -1.9771 43 1 10.2499 -4.3086 -4.1181 44 1 6.2862 -7.9126 -2.3258 45 1 5.1954 -6.5876 -2.8350 46 1 5.3233 -2.3906 0.0100 47 1 4.0907 -0.2662 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033621026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:15 Heat of formation + Delta-G solvation = 51.017435 kcal Electronic energy + Delta-G solvation = -27128.437416 eV Core-core repulsion = 23506.022729 eV Total energy + Delta-G solvation = -3622.414687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.28180 -39.10131 -37.38152 -36.07329 -34.17916 -32.23321 -31.21174 -30.25441 -29.14425 -28.44995 -27.77220 -26.09561 -25.32277 -24.21406 -22.35696 -21.92545 -20.35477 -20.04755 -18.77954 -17.47010 -17.00519 -16.79974 -16.01377 -15.78602 -15.35975 -14.83149 -14.65532 -14.60037 -14.14232 -13.88914 -13.71345 -13.48385 -13.14501 -12.96250 -12.75687 -12.54611 -12.41061 -12.23613 -12.07412 -11.90948 -11.88149 -11.62275 -11.42533 -10.93729 -10.89655 -10.79383 -10.67956 -10.18253 -10.15713 -9.94310 -9.87150 -9.64363 -9.26254 -8.92004 -8.67012 -8.09678 -7.42769 -6.80849 -5.73787 -3.07714 1.26362 1.46663 2.87024 3.11080 3.39156 3.44394 3.44836 3.50068 3.97632 4.48151 4.66330 4.69446 4.90943 4.92534 4.97631 5.04867 5.26722 5.35254 5.36879 5.40306 5.43799 5.46653 5.51564 5.56735 5.61475 5.76515 5.85602 5.93275 6.00959 6.14187 6.16455 6.26842 6.28994 6.42161 6.55873 6.58694 6.59865 6.69534 6.71926 6.86460 7.00246 7.20075 7.28965 7.54924 7.60335 7.80610 7.95768 8.22190 8.61896 9.19575 9.78943 10.45010 11.37093 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.003520 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.469645 B = 7952.100957 C = 9118.561962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.635 5.635 3 C 0.091 3.909 4 C 0.229 3.771 5 C -0.206 4.206 6 C -0.019 4.019 7 C -0.181 4.181 8 C 0.559 3.441 9 O -0.558 6.558 10 N -0.582 5.582 11 C 0.056 3.944 12 C 0.123 3.877 13 H 0.099 0.901 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.920 5.920 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.124 3.876 26 C -0.037 4.037 27 C -0.206 4.206 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.044 0.956 46 H 0.134 0.866 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 11.004 8.846 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.346 5.346 3 C -0.052 4.052 4 C 0.126 3.874 5 C -0.228 4.228 6 C -0.038 4.038 7 C -0.186 4.186 8 C 0.348 3.652 9 O -0.438 6.438 10 N -0.313 5.313 11 C -0.086 4.086 12 C 0.019 3.981 13 H 0.117 0.883 14 C -0.195 4.195 15 C 0.050 3.950 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C -0.002 4.002 26 C -0.056 4.056 27 C -0.228 4.228 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.152 0.848 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.644 10.815 9.046 20.329 hybrid contribution 0.276 0.348 -1.049 1.139 sum -14.368 11.163 7.998 19.875 Atomic orbital electron populations 1.21624 0.79444 1.02367 1.01420 1.46238 1.05143 1.03393 1.79856 1.21707 0.97445 0.84688 1.01406 1.17951 0.91293 0.85613 0.92509 1.20506 0.99506 0.90704 1.12111 1.20862 0.92428 0.97688 0.92849 1.19641 0.94070 0.93132 1.11758 1.18317 0.80195 0.87280 0.79367 1.90714 1.68421 1.42415 1.42263 1.47593 1.27108 1.11824 1.44727 1.22511 0.98766 0.88233 0.99095 1.22240 0.92966 0.84504 0.98374 0.88270 1.23240 0.94708 1.01203 1.00305 1.21242 0.92314 0.98999 0.82490 1.44599 1.20399 1.64996 1.02936 1.18998 1.04709 1.30652 0.81464 0.90532 1.24769 0.96972 1.00719 0.97714 1.69949 1.11748 1.43278 1.31796 0.86228 0.77061 0.77882 0.84756 1.21177 1.21644 1.21250 1.21940 0.92055 0.95155 0.91099 1.21343 1.00289 0.90858 0.93123 1.20591 0.91853 0.98581 1.11815 0.92666 0.90940 0.92605 0.93168 0.91588 0.91037 0.85856 0.85459 0.85935 0.91891 0.93441 0.91904 0.91392 0.93080 0.94000 0.93691 0.95162 0.93792 0.84817 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 9.39 59.85 0.56 1.19 16 2 N -0.64 -5.80 3.39 -187.55 -0.64 -6.43 16 3 C 0.09 0.62 10.14 59.85 0.61 1.22 16 4 C 0.23 2.66 6.55 -83.86 -0.55 2.11 16 5 C -0.21 -2.46 9.28 -39.44 -0.37 -2.82 16 6 C -0.02 -0.26 9.64 -39.23 -0.38 -0.64 16 7 C -0.18 -2.83 5.15 -104.95 -0.54 -3.38 16 8 C 0.56 10.31 7.31 -12.47 -0.09 10.22 16 9 O -0.56 -11.70 16.32 5.29 0.09 -11.61 16 10 N -0.58 -10.75 2.91 -172.71 -0.50 -11.25 16 11 C 0.06 1.01 7.16 59.85 0.43 1.44 16 12 C 0.12 2.37 3.66 -65.78 -0.24 2.13 16 13 H 0.10 1.89 7.01 -51.93 -0.36 1.53 16 14 C -0.16 -2.97 6.39 -24.89 -0.16 -3.13 16 15 C 0.17 4.05 4.28 -3.06 -0.01 4.03 16 16 N -0.60 -14.67 1.93 -169.99 -0.33 -15.00 16 17 C -0.23 -6.15 9.94 -15.06 -0.15 -6.30 16 18 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 19 C -0.01 -0.14 5.49 -17.44 -0.10 -0.24 16 20 N -0.92 -25.81 10.31 55.49 0.57 -25.24 16 21 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.12 2.62 6.58 -2.48 -0.02 2.60 16 26 C -0.04 -0.51 7.50 -39.23 -0.29 -0.80 16 27 C -0.21 -2.47 9.18 -39.45 -0.36 -2.83 16 28 H 0.05 0.35 7.93 -51.93 -0.41 -0.06 16 29 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 30 H 0.06 0.37 7.93 -51.93 -0.41 -0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 33 H 0.07 0.48 6.17 -51.93 -0.32 0.16 16 34 H 0.12 1.20 6.70 -52.49 -0.35 0.85 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.12 2.67 4.60 -51.93 -0.24 2.44 16 37 H 0.06 1.03 5.60 -51.93 -0.29 0.74 16 38 H 0.05 0.80 7.10 -51.93 -0.37 0.43 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.05 1.27 6.16 -51.93 -0.32 0.95 16 42 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.13 1.78 5.68 -52.49 -0.30 1.48 16 47 H 0.13 1.25 6.11 -52.49 -0.32 0.93 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -31.31 362.51 -9.01 -40.33 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.99 Total: 2.45 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.66 Total: 4.80 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.89 Total: -57.92 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.31 -9.01 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033621026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.345 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds