Wall clock time and date at job start Tue Mar 31 2020 11:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99989 * 2 1 4 4 C 1.39043 * 120.00060 * 180.02562 * 2 1 3 5 5 C 1.39225 * 119.92881 * 0.02562 * 4 2 1 6 6 C 1.37614 * 120.06610 * 180.02562 * 5 4 2 7 7 C 1.39799 * 119.92978 * 359.97438 * 6 5 4 8 8 C 1.47522 * 120.06320 * 179.97438 * 7 6 5 9 9 O 1.21591 * 120.00622 * 318.62482 * 8 7 6 10 10 N 1.34780 * 119.99647 * 138.62504 * 8 7 6 11 11 C 1.46504 * 119.99783 * 4.44974 * 10 8 7 12 12 C 1.46494 * 120.00101 * 184.44869 * 10 8 7 13 13 H 1.09005 * 110.88227 * 358.09560 * 12 10 8 14 14 C 1.55164 * 111.00353 * 234.22146 * 12 10 8 15 15 C 1.54327 * 102.93773 * 277.42350 * 14 12 10 16 16 N 1.47023 * 107.27307 * 337.80522 * 15 14 12 17 17 C 1.36933 * 125.64349 * 178.97536 * 16 15 14 18 18 H 1.08007 * 119.99542 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00397 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47071 * 60.00039 * 21 19 17 23 23 H 1.48499 * 109.47035 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47129 * 300.00298 * 21 19 17 25 25 C 1.47521 * 108.71513 * 358.94718 * 16 15 14 26 26 C 1.39793 * 119.86275 * 0.26575 * 7 6 5 27 27 C 1.37613 * 119.93106 * 359.47957 * 26 7 6 28 28 H 1.08992 * 109.47124 * 239.99780 * 1 2 3 29 29 H 1.09004 * 109.47020 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47244 * 119.99721 * 1 2 3 31 31 H 1.09004 * 109.47111 * 270.00217 * 3 2 1 32 32 H 1.08999 * 109.46694 * 29.99664 * 3 2 1 33 33 H 1.08994 * 109.47294 * 149.99754 * 3 2 1 34 34 H 1.07998 * 119.97075 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.02970 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46550 * 209.87730 * 11 10 8 37 37 H 1.08998 * 109.47676 * 329.87383 * 11 10 8 38 38 H 1.08998 * 109.47498 * 89.88299 * 11 10 8 39 39 H 1.09000 * 110.71870 * 35.78846 * 14 12 10 40 40 H 1.09007 * 110.71855 * 159.06567 * 14 12 10 41 41 H 1.09000 * 109.87744 * 97.22780 * 15 14 12 42 42 H 1.08999 * 109.87794 * 218.23425 * 15 14 12 43 43 H 0.96997 * 120.00747 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.37154 * 265.30636 * 25 16 15 45 45 H 1.09000 * 110.41575 * 142.95161 * 25 16 15 46 46 H 1.08001 * 120.03275 * 179.72738 * 26 7 6 47 47 H 1.07994 * 119.96439 * 180.25261 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4627 -2.4090 -0.0016 6 6 2.1479 -3.6024 -0.0016 7 6 3.5459 -3.6040 -0.0011 8 6 4.2834 -4.8817 -0.0005 9 8 3.9029 -5.8031 0.6955 10 7 5.3792 -5.0275 -0.7716 11 6 5.8945 -3.8882 -1.5351 12 6 6.0549 -6.3251 -0.8462 13 1 5.5693 -7.0540 -0.1973 14 6 7.5612 -6.1885 -0.4996 15 6 8.1820 -5.7235 -1.8338 16 7 7.2610 -6.1250 -2.9072 17 6 7.4371 -5.8799 -4.2429 18 1 6.6994 -6.2180 -4.9557 19 6 8.5634 -5.1970 -4.6807 20 7 9.4626 -4.7855 -3.8122 21 14 8.8038 -4.8634 -6.5030 22 1 7.6706 -4.0490 -7.0108 23 1 10.0757 -4.1246 -6.7073 24 1 8.8566 -6.1518 -7.2394 25 6 6.1162 -6.8361 -2.3073 26 6 4.2433 -2.3925 0.0051 27 6 3.5524 -1.2025 -0.0002 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1385 0.5138 34 1 0.3827 -2.4071 -0.0025 35 1 1.6062 -4.5367 -0.0020 36 1 6.3815 -4.2487 -2.4412 37 1 5.0699 -3.2281 -1.8039 38 1 6.6155 -3.3405 -0.9284 39 1 7.7116 -5.4393 0.2777 40 1 7.9757 -7.1498 -0.1957 41 1 8.2979 -4.6397 -1.8308 42 1 9.1520 -6.1996 -1.9771 43 1 10.2499 -4.3086 -4.1181 44 1 6.2862 -7.9126 -2.3258 45 1 5.1954 -6.5876 -2.8350 46 1 5.3233 -2.3906 0.0100 47 1 4.0907 -0.2662 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033621026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:15 Heat of formation + Delta-G solvation = 34.020126 kcal Electronic energy + Delta-G solvation = -27129.174474 eV Core-core repulsion = 23506.022729 eV Total energy + Delta-G solvation = -3623.151746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55935 -40.24097 -38.94304 -37.00632 -35.81608 -34.03949 -32.19505 -31.50790 -30.76269 -29.49541 -28.97214 -27.54558 -26.62576 -25.78568 -23.38668 -23.02211 -21.92460 -21.55534 -20.20453 -18.90952 -18.48028 -18.07916 -17.33832 -16.82812 -16.62841 -16.18275 -15.95932 -15.79718 -15.57249 -15.43902 -14.84110 -14.62494 -14.46022 -14.12234 -13.84646 -13.56592 -13.50542 -13.44617 -13.35176 -13.27920 -13.04626 -12.88625 -12.81715 -12.76988 -12.65067 -12.31322 -12.04978 -11.95733 -11.78825 -11.69013 -11.51830 -10.91360 -10.67909 -10.62738 -9.92569 -9.66108 -8.77797 -8.25774 -7.80153 -5.15317 0.20042 0.49443 1.50156 1.51772 1.58031 1.77625 2.09620 2.20861 2.52680 2.91177 3.38901 3.61087 3.70134 3.84617 3.93547 3.97976 4.05756 4.18958 4.32467 4.35792 4.38850 4.45700 4.52890 4.61841 4.65119 4.68634 4.70439 4.74917 4.79514 4.90153 4.91513 4.92968 4.99152 5.04581 5.08833 5.23854 5.26696 5.33408 5.49826 5.51501 5.65913 5.71269 5.77681 5.82766 6.22111 6.29689 6.45276 6.51320 7.14550 7.18291 7.79183 8.44491 9.29110 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.003520 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.469645 B = 7952.100957 C = 9118.561962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.634 5.634 3 C 0.082 3.918 4 C 0.233 3.767 5 C -0.206 4.206 6 C -0.026 4.026 7 C -0.212 4.212 8 C 0.560 3.440 9 O -0.589 6.589 10 N -0.585 5.585 11 C 0.071 3.929 12 C 0.132 3.868 13 H 0.105 0.895 14 C -0.140 4.140 15 C 0.187 3.813 16 N -0.614 5.614 17 C -0.241 4.241 18 H 0.077 0.923 19 C -0.054 4.054 20 N -0.944 5.944 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.283 1.283 25 C 0.125 3.875 26 C -0.039 4.039 27 C -0.209 4.209 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.007 0.993 43 H 0.247 0.753 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.134 0.866 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 12.926 9.119 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.343 5.343 3 C -0.060 4.060 4 C 0.127 3.873 5 C -0.229 4.229 6 C -0.046 4.046 7 C -0.217 4.217 8 C 0.351 3.649 9 O -0.472 6.472 10 N -0.315 5.315 11 C -0.071 4.071 12 C 0.027 3.973 13 H 0.123 0.877 14 C -0.179 4.179 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.369 4.369 18 H 0.095 0.905 19 C -0.248 4.248 20 N -0.592 5.592 21 Si 0.801 3.199 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.210 1.210 25 C -0.001 4.001 26 C -0.059 4.059 27 C -0.231 4.231 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.025 0.975 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.151 0.849 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.485 12.765 9.321 22.838 hybrid contribution 0.705 -0.138 -1.116 1.328 sum -15.780 12.627 8.205 21.812 Atomic orbital electron populations 1.21844 0.77891 1.04165 1.01706 1.46578 1.06358 1.03218 1.78131 1.21916 0.97858 0.84136 1.02067 1.18127 0.91438 0.86631 0.91072 1.20690 1.00575 0.90088 1.11512 1.20928 0.91930 0.98546 0.93178 1.19508 0.94632 0.92260 1.15324 1.18760 0.79665 0.88007 0.78422 1.90680 1.69082 1.43863 1.43536 1.47631 1.27378 1.11546 1.44916 1.22315 0.99173 0.88124 0.97538 1.22104 0.93025 0.85216 0.96958 0.87679 1.23115 0.94300 1.02298 0.98236 1.20968 0.91037 0.97413 0.84311 1.44741 1.21465 1.65245 1.02638 1.19284 1.04662 1.30271 0.82713 0.90514 1.25476 0.96918 1.00996 1.01403 1.70140 1.11916 1.43967 1.33209 0.85257 0.76727 0.77586 0.80343 1.20350 1.22072 1.20981 1.22012 0.90732 0.95245 0.92099 1.21343 1.00330 0.90900 0.93282 1.20802 0.92312 0.98712 1.11313 0.92183 0.88528 0.92459 0.92744 0.89235 0.90937 0.83667 0.85805 0.89555 0.90384 0.92516 0.90598 0.89764 0.95124 0.97515 0.94353 0.94401 0.94274 0.84866 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 9.39 127.77 1.20 2.04 16 2 N -0.63 -9.48 3.39 -747.29 -2.53 -12.02 16 3 C 0.08 0.84 10.14 127.77 1.30 2.13 16 4 C 0.23 4.84 6.55 38.47 0.25 5.09 16 5 C -0.21 -4.53 9.28 22.36 0.21 -4.32 16 6 C -0.03 -0.72 9.64 22.50 0.22 -0.50 16 7 C -0.21 -6.57 5.15 -20.08 -0.10 -6.67 16 8 C 0.56 20.70 7.31 86.69 0.63 21.34 16 9 O -0.59 -24.88 16.32 -4.00 -0.07 -24.95 16 10 N -0.59 -21.63 2.91 -818.58 -2.38 -24.01 16 11 C 0.07 2.57 7.16 127.77 0.91 3.48 16 12 C 0.13 5.03 3.66 46.39 0.17 5.20 16 13 H 0.11 3.96 7.01 -2.38 -0.02 3.94 16 14 C -0.14 -5.34 6.39 31.79 0.20 -5.13 16 15 C 0.19 8.92 4.28 86.73 0.37 9.30 16 16 N -0.61 -30.48 1.93 -691.74 -1.34 -31.81 16 17 C -0.24 -13.04 9.94 84.03 0.84 -12.21 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.05 -2.97 5.49 84.86 0.47 -2.50 16 20 N -0.94 -54.20 10.31 21.65 0.22 -53.98 16 21 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.13 5.31 6.58 86.84 0.57 5.88 16 26 C -0.04 -1.04 7.50 22.50 0.17 -0.87 16 27 C -0.21 -4.59 9.18 22.36 0.21 -4.38 16 28 H 0.06 0.56 7.93 -2.39 -0.02 0.54 16 29 H 0.10 0.49 7.79 -2.39 -0.02 0.47 16 30 H 0.06 0.57 7.93 -2.39 -0.02 0.55 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.09 0.52 7.92 -2.39 -0.02 0.50 16 33 H 0.07 0.74 6.17 -2.39 -0.01 0.72 16 34 H 0.15 2.45 6.70 -2.91 -0.02 2.43 16 35 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.09 3.84 4.60 -2.39 -0.01 3.83 16 37 H 0.08 2.55 5.60 -2.39 -0.01 2.54 16 38 H 0.06 1.91 7.10 -2.39 -0.02 1.89 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.03 1.57 6.16 -2.39 -0.01 1.56 16 42 H 0.01 0.36 7.50 -2.39 -0.02 0.34 16 43 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.13 3.45 5.68 -2.91 -0.02 3.43 16 47 H 0.15 2.52 6.11 -2.91 -0.02 2.50 16 Total: -1.00 -68.24 362.51 4.51 -63.73 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.97 Total: 18.53 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 7.61 Total: 17.86 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -6.03 Total: -121.81 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.07 Total: -24.95 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.24 4.51 -63.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033621026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.750 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds