Wall clock time and date at job start Tue Mar 31 2020 11:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00350 * 2 1 4 4 C 1.39707 * 119.99674 * 180.02562 * 2 1 3 5 5 C 1.39026 * 120.00975 * 6.03962 * 4 2 1 6 6 C 1.38199 * 120.22467 * 179.97438 * 5 4 2 7 7 C 1.38027 * 120.22873 * 0.02562 * 6 5 4 8 8 C 1.39578 * 120.00291 * 0.02562 * 7 6 5 9 9 C 1.47860 * 120.11076 * 179.97438 * 8 7 6 10 10 O 1.21557 * 120.00123 * 222.49582 * 9 8 7 11 11 N 1.34771 * 120.00070 * 42.49186 * 9 8 7 12 12 C 1.46503 * 120.00069 * 355.78724 * 11 9 8 13 13 C 1.46501 * 120.00238 * 175.79040 * 11 9 8 14 14 H 1.08997 * 110.64116 * 1.68646 * 13 11 9 15 15 C 1.55152 * 110.87563 * 124.93545 * 13 11 9 16 16 C 1.55126 * 101.48843 * 82.76791 * 15 13 11 17 17 N 1.47427 * 104.72075 * 37.29447 * 16 15 13 18 18 C 1.36939 * 125.64743 * 155.81755 * 17 16 15 19 19 H 1.07995 * 119.99651 * 189.20080 * 18 17 16 20 20 C 1.38813 * 119.99770 * 9.20318 * 18 17 16 21 21 N 1.31618 * 120.00461 * 8.00191 * 20 18 17 22 22 Si 1.86796 * 119.99600 * 188.00486 * 20 18 17 23 23 H 1.48502 * 109.47013 * 265.00294 * 22 20 18 24 24 H 1.48495 * 109.47670 * 25.00288 * 22 20 18 25 25 H 1.48503 * 109.47420 * 145.00691 * 22 20 18 26 26 C 1.47015 * 108.70346 * 335.55642 * 17 16 15 27 27 C 1.38646 * 120.00385 * 186.31839 * 4 2 1 28 28 H 1.09001 * 109.46869 * 269.99680 * 1 2 3 29 29 H 1.08997 * 109.47045 * 29.99649 * 1 2 3 30 30 H 1.09004 * 109.47411 * 149.99668 * 1 2 3 31 31 H 1.08997 * 109.47361 * 185.01720 * 3 2 1 32 32 H 1.09000 * 109.47048 * 305.01937 * 3 2 1 33 33 H 1.09000 * 109.46840 * 65.01251 * 3 2 1 34 34 H 1.08002 * 119.88434 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.88624 * 179.97438 * 6 5 4 36 36 H 1.07996 * 120.00334 * 180.02562 * 7 6 5 37 37 H 1.08993 * 109.47183 * 271.29758 * 12 11 9 38 38 H 1.09005 * 109.46655 * 31.30232 * 12 11 9 39 39 H 1.08996 * 109.46994 * 151.29520 * 12 11 9 40 40 H 1.08995 * 111.00913 * 201.00986 * 15 13 11 41 41 H 1.09008 * 111.00541 * 324.82297 * 15 13 11 42 42 H 1.09004 * 110.49617 * 278.45922 * 16 15 13 43 43 H 1.09000 * 110.34971 * 156.06282 * 16 15 13 44 44 H 0.97000 * 120.00105 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.88433 * 120.69958 * 26 17 16 46 46 H 1.09000 * 109.88308 * 241.87009 * 26 17 16 47 47 H 1.08003 * 120.11443 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 1.4742 -2.4106 -0.1277 6 6 2.1607 -3.6100 -0.1294 7 6 3.5353 -3.6242 -0.0042 8 6 4.2367 -2.4244 0.1252 9 6 5.7091 -2.4368 0.2600 10 8 6.2519 -1.7050 1.0647 11 7 6.4493 -3.2594 -0.5091 12 6 5.7915 -4.2068 -1.4125 13 6 7.9118 -3.2064 -0.4419 14 1 8.2362 -2.4731 0.2964 15 6 8.5017 -4.6053 -0.1222 16 6 8.5212 -5.2611 -1.5279 17 7 8.8859 -4.1672 -2.4465 18 6 9.4716 -4.3186 -3.6750 19 1 9.8356 -3.4539 -4.2099 20 6 9.5974 -5.5835 -4.2328 21 7 9.0171 -6.6163 -3.6594 22 14 10.5905 -5.8198 -5.7971 23 1 9.6819 -5.7800 -6.9710 24 1 11.5970 -4.7342 -5.9133 25 1 11.2821 -7.1331 -5.7509 26 6 8.5109 -2.8873 -1.8279 27 6 3.5436 -1.2138 0.1316 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.2658 1.0714 -0.0899 32 1 1.8685 1.8782 -0.8416 33 1 2.0033 1.8004 0.9315 34 1 0.3987 -2.4059 -0.2256 35 1 1.6198 -4.5395 -0.2281 36 1 4.0681 -4.5635 -0.0063 37 1 5.5989 -5.1398 -0.8830 38 1 4.8482 -3.7838 -1.7584 39 1 6.4378 -4.4014 -2.2683 40 1 9.5083 -4.5207 0.2872 41 1 7.8515 -5.1577 0.5563 42 1 7.5363 -5.6548 -1.7791 43 1 9.2685 -6.0536 -1.5660 44 1 9.1047 -7.5001 -4.0494 45 1 9.3934 -2.2579 -1.7142 46 1 7.7687 -2.3808 -2.4449 47 1 4.0806 -0.2825 0.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033622848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:19 Heat of formation + Delta-G solvation = 55.173783 kcal Electronic energy + Delta-G solvation = -27018.446344 eV Core-core repulsion = 23396.211890 eV Total energy + Delta-G solvation = -3622.234454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41691 -39.12127 -37.37106 -36.20230 -34.34470 -32.23147 -31.26727 -30.21696 -29.12767 -28.46967 -27.91242 -26.19768 -24.93433 -24.51159 -23.21041 -21.36526 -20.47945 -20.12005 -18.80559 -17.60355 -16.91031 -16.67996 -15.99724 -15.83990 -15.35349 -15.31318 -14.83221 -14.68396 -14.24787 -13.91767 -13.82193 -13.69227 -12.98708 -12.85941 -12.77515 -12.59428 -12.40486 -12.26041 -12.17985 -11.94072 -11.74725 -11.61449 -11.33841 -11.10231 -11.04136 -10.86844 -10.80307 -10.29698 -10.06718 -9.99320 -9.92087 -9.65551 -9.41802 -8.94776 -8.59573 -8.20562 -7.43617 -6.82300 -5.76325 -3.09007 1.04839 1.49748 2.83276 3.01330 3.33496 3.38817 3.45030 3.46746 3.86310 4.48551 4.58679 4.67203 4.78575 4.97939 5.06388 5.08822 5.24265 5.30545 5.35188 5.41290 5.43421 5.46001 5.47362 5.55263 5.58232 5.67259 5.73294 5.80661 5.90619 5.97133 6.08223 6.27897 6.31179 6.39289 6.40946 6.46956 6.56331 6.62412 6.65904 6.73699 7.02156 7.07937 7.29331 7.48189 7.55686 7.75043 7.78205 8.24249 8.42335 9.18025 9.79156 10.46305 11.36191 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.002978 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.955447 B = 9399.117800 C = 9611.469379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.641 5.641 3 C 0.089 3.911 4 C 0.205 3.795 5 C -0.181 4.181 6 C -0.079 4.079 7 C -0.145 4.145 8 C -0.073 4.073 9 C 0.555 3.445 10 O -0.548 6.548 11 N -0.585 5.585 12 C 0.064 3.936 13 C 0.126 3.874 14 H 0.100 0.900 15 C -0.156 4.156 16 C 0.164 3.836 17 N -0.602 5.602 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.127 3.873 27 C -0.147 4.147 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.252 0.748 45 H 0.033 0.967 46 H 0.027 0.973 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.353 9.144 7.916 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.354 5.354 3 C -0.054 4.054 4 C 0.104 3.896 5 C -0.204 4.204 6 C -0.097 4.097 7 C -0.166 4.166 8 C -0.077 4.077 9 C 0.343 3.657 10 O -0.427 6.427 11 N -0.315 5.315 12 C -0.079 4.079 13 C 0.022 3.978 14 H 0.118 0.882 15 C -0.196 4.196 16 C 0.040 3.960 17 N -0.329 5.329 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.217 1.217 26 C 0.000 4.000 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.082 9.527 8.172 21.197 hybrid contribution 0.375 -0.210 -0.930 1.024 sum -16.707 9.317 7.242 20.454 Atomic orbital electron populations 1.21593 0.79569 1.02556 1.01065 1.46242 1.04884 1.03059 1.81184 1.21705 0.97965 0.84836 1.00902 1.17658 0.90833 0.85971 0.95118 1.20797 0.99796 0.91171 1.08633 1.20831 0.93787 0.97369 0.97761 1.21354 0.94429 0.97555 1.03227 1.19650 0.92895 0.93947 1.01165 1.18420 0.86616 0.79960 0.80689 1.90734 1.73273 1.42160 1.36532 1.47710 1.06628 1.36830 1.40356 1.22391 0.98804 0.91491 0.95169 1.22138 0.77937 0.99093 0.98583 0.88195 1.23388 1.00028 0.95542 1.00626 1.21707 0.99962 0.91026 0.83343 1.44522 1.71341 0.99829 1.17200 1.19019 1.30443 0.93195 0.92885 0.90680 1.24786 1.00722 0.95939 0.98835 1.69933 1.46757 0.99081 1.40849 0.86127 0.79726 0.77214 0.82837 1.21677 1.20666 1.21666 1.21645 0.96476 0.90520 0.91374 1.20662 0.92026 0.97820 1.06467 0.93508 0.91662 0.91291 0.90229 0.92603 0.93006 0.85858 0.85538 0.85015 0.92650 0.91351 0.87748 0.90984 0.91894 0.94630 0.91007 0.93725 0.94879 0.95469 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 10.36 59.85 0.62 1.26 16 2 N -0.64 -6.23 3.41 -187.59 -0.64 -6.87 16 3 C 0.09 0.73 10.59 59.85 0.63 1.36 16 4 C 0.20 2.43 6.53 -83.83 -0.55 1.88 16 5 C -0.18 -1.92 9.25 -39.30 -0.36 -2.29 16 6 C -0.08 -0.85 10.02 -39.67 -0.40 -1.25 16 7 C -0.15 -1.86 7.56 -39.16 -0.30 -2.16 16 8 C -0.07 -1.09 5.11 -104.99 -0.54 -1.63 16 9 C 0.55 9.79 7.31 -12.33 -0.09 9.70 16 10 O -0.55 -11.12 16.33 5.32 0.09 -11.03 16 11 N -0.58 -10.29 2.83 -172.94 -0.49 -10.77 16 12 C 0.06 1.05 7.07 59.85 0.42 1.47 16 13 C 0.13 2.38 3.57 -66.10 -0.24 2.15 16 14 H 0.10 1.90 6.99 -51.93 -0.36 1.53 16 15 C -0.16 -2.98 6.55 -24.47 -0.16 -3.14 16 16 C 0.16 3.79 4.57 -2.41 -0.01 3.78 16 17 N -0.60 -14.90 2.98 -169.94 -0.51 -15.41 16 18 C -0.23 -6.19 10.25 -15.06 -0.15 -6.34 16 19 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 20 C -0.01 -0.17 5.42 -17.43 -0.09 -0.27 16 21 N -0.92 -25.97 10.59 55.49 0.59 -25.38 16 22 Si 0.91 21.72 29.56 -169.99 -5.02 16.70 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.13 2.69 6.25 -3.07 -0.02 2.67 16 27 C -0.15 -2.02 8.87 -38.96 -0.35 -2.37 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 5.98 -51.93 -0.31 0.11 16 31 H 0.08 0.72 5.40 -51.93 -0.28 0.44 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.12 1.02 6.01 -52.49 -0.32 0.70 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.61 5.75 -52.49 -0.30 1.31 16 37 H 0.06 0.83 7.01 -51.93 -0.36 0.47 16 38 H 0.07 1.01 5.75 -51.93 -0.30 0.71 16 39 H 0.10 2.09 5.10 -51.93 -0.26 1.83 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 42 H 0.04 0.85 5.49 -51.93 -0.29 0.56 16 43 H 0.07 1.88 6.82 -51.93 -0.35 1.52 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 47 H 0.13 1.78 5.84 -52.48 -0.31 1.47 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -31.64 361.62 -8.90 -40.54 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.79 Total: 1.95 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.58 Total: 4.83 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -1.05 Total: -58.44 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.64 -8.90 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033622848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.712 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds