Wall clock time and date at job start Tue Mar 31 2020 11:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00350 * 2 1 4 4 C 1.39707 * 119.99674 * 180.02562 * 2 1 3 5 5 C 1.39026 * 120.00975 * 6.03962 * 4 2 1 6 6 C 1.38199 * 120.22467 * 179.97438 * 5 4 2 7 7 C 1.38027 * 120.22873 * 0.02562 * 6 5 4 8 8 C 1.39578 * 120.00291 * 0.02562 * 7 6 5 9 9 C 1.47860 * 120.11076 * 179.97438 * 8 7 6 10 10 O 1.21557 * 120.00123 * 222.49582 * 9 8 7 11 11 N 1.34771 * 120.00070 * 42.49186 * 9 8 7 12 12 C 1.46503 * 120.00069 * 355.78724 * 11 9 8 13 13 C 1.46501 * 120.00238 * 175.79040 * 11 9 8 14 14 H 1.08997 * 110.64116 * 1.68646 * 13 11 9 15 15 C 1.55152 * 110.87563 * 124.93545 * 13 11 9 16 16 C 1.55126 * 101.48843 * 82.76791 * 15 13 11 17 17 N 1.47427 * 104.72075 * 37.29447 * 16 15 13 18 18 C 1.36939 * 125.64743 * 155.81755 * 17 16 15 19 19 H 1.07995 * 119.99651 * 189.20080 * 18 17 16 20 20 C 1.38813 * 119.99770 * 9.20318 * 18 17 16 21 21 N 1.31618 * 120.00461 * 8.00191 * 20 18 17 22 22 Si 1.86796 * 119.99600 * 188.00486 * 20 18 17 23 23 H 1.48502 * 109.47013 * 265.00294 * 22 20 18 24 24 H 1.48495 * 109.47670 * 25.00288 * 22 20 18 25 25 H 1.48503 * 109.47420 * 145.00691 * 22 20 18 26 26 C 1.47015 * 108.70346 * 335.55642 * 17 16 15 27 27 C 1.38646 * 120.00385 * 186.31839 * 4 2 1 28 28 H 1.09001 * 109.46869 * 269.99680 * 1 2 3 29 29 H 1.08997 * 109.47045 * 29.99649 * 1 2 3 30 30 H 1.09004 * 109.47411 * 149.99668 * 1 2 3 31 31 H 1.08997 * 109.47361 * 185.01720 * 3 2 1 32 32 H 1.09000 * 109.47048 * 305.01937 * 3 2 1 33 33 H 1.09000 * 109.46840 * 65.01251 * 3 2 1 34 34 H 1.08002 * 119.88434 * 359.97438 * 5 4 2 35 35 H 1.07997 * 119.88624 * 179.97438 * 6 5 4 36 36 H 1.07996 * 120.00334 * 180.02562 * 7 6 5 37 37 H 1.08993 * 109.47183 * 271.29758 * 12 11 9 38 38 H 1.09005 * 109.46655 * 31.30232 * 12 11 9 39 39 H 1.08996 * 109.46994 * 151.29520 * 12 11 9 40 40 H 1.08995 * 111.00913 * 201.00986 * 15 13 11 41 41 H 1.09008 * 111.00541 * 324.82297 * 15 13 11 42 42 H 1.09004 * 110.49617 * 278.45922 * 16 15 13 43 43 H 1.09000 * 110.34971 * 156.06282 * 16 15 13 44 44 H 0.97000 * 120.00105 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.88433 * 120.69958 * 26 17 16 46 46 H 1.09000 * 109.88308 * 241.87009 * 26 17 16 47 47 H 1.08003 * 120.11443 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 1.4742 -2.4106 -0.1277 6 6 2.1607 -3.6100 -0.1294 7 6 3.5353 -3.6242 -0.0042 8 6 4.2367 -2.4244 0.1252 9 6 5.7091 -2.4368 0.2600 10 8 6.2519 -1.7050 1.0647 11 7 6.4493 -3.2594 -0.5091 12 6 5.7915 -4.2068 -1.4125 13 6 7.9118 -3.2064 -0.4419 14 1 8.2362 -2.4731 0.2964 15 6 8.5017 -4.6053 -0.1222 16 6 8.5212 -5.2611 -1.5279 17 7 8.8859 -4.1672 -2.4465 18 6 9.4716 -4.3186 -3.6750 19 1 9.8356 -3.4539 -4.2099 20 6 9.5974 -5.5835 -4.2328 21 7 9.0171 -6.6163 -3.6594 22 14 10.5905 -5.8198 -5.7971 23 1 9.6819 -5.7800 -6.9710 24 1 11.5970 -4.7342 -5.9133 25 1 11.2821 -7.1331 -5.7509 26 6 8.5109 -2.8873 -1.8279 27 6 3.5436 -1.2138 0.1316 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.2658 1.0714 -0.0899 32 1 1.8685 1.8782 -0.8416 33 1 2.0033 1.8004 0.9315 34 1 0.3987 -2.4059 -0.2256 35 1 1.6198 -4.5395 -0.2281 36 1 4.0681 -4.5635 -0.0063 37 1 5.5989 -5.1398 -0.8830 38 1 4.8482 -3.7838 -1.7584 39 1 6.4378 -4.4014 -2.2683 40 1 9.5083 -4.5207 0.2872 41 1 7.8515 -5.1577 0.5563 42 1 7.5363 -5.6548 -1.7791 43 1 9.2685 -6.0536 -1.5660 44 1 9.1047 -7.5001 -4.0494 45 1 9.3934 -2.2579 -1.7142 46 1 7.7687 -2.3808 -2.4449 47 1 4.0806 -0.2825 0.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033622848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:18 Heat of formation + Delta-G solvation = 37.232739 kcal Electronic energy + Delta-G solvation = -27019.224326 eV Core-core repulsion = 23396.211890 eV Total energy + Delta-G solvation = -3623.012436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66381 -40.23062 -38.93598 -37.07932 -35.95086 -34.03206 -32.30362 -31.34212 -30.73322 -29.58047 -29.08594 -27.71279 -26.33960 -25.67992 -24.45068 -22.29904 -22.10820 -21.61917 -20.16544 -18.92781 -18.61586 -17.98897 -17.12945 -16.90144 -16.68263 -16.40597 -16.08599 -15.88782 -15.67803 -15.56127 -14.88564 -14.71215 -14.38567 -14.22148 -13.90076 -13.73109 -13.51537 -13.37444 -13.33361 -13.13923 -13.12641 -12.92420 -12.86734 -12.76325 -12.44277 -12.34436 -12.10060 -11.99004 -11.85381 -11.79365 -11.54645 -10.96707 -10.70455 -10.59846 -9.94370 -9.66360 -8.83412 -8.22716 -7.85137 -5.19369 0.03951 0.59413 1.48402 1.49451 1.58647 1.64727 1.94643 2.25984 2.51165 2.89038 3.34396 3.42929 3.70286 3.85178 3.88827 3.98540 4.05815 4.22429 4.26265 4.29086 4.38991 4.43661 4.51081 4.57427 4.61083 4.63628 4.66537 4.73314 4.79048 4.86267 4.88604 4.92425 4.92779 5.00769 5.02254 5.11342 5.22565 5.42958 5.47902 5.53549 5.57742 5.63971 5.78787 5.81673 6.22393 6.30975 6.36637 6.49895 7.03588 7.11540 7.76779 8.43548 9.25800 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020256 B = 0.002978 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.955447 B = 9399.117800 C = 9611.469379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.645 5.645 3 C 0.084 3.916 4 C 0.201 3.799 5 C -0.176 4.176 6 C -0.072 4.072 7 C -0.154 4.154 8 C -0.095 4.095 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.586 5.586 12 C 0.075 3.925 13 C 0.136 3.864 14 H 0.103 0.897 15 C -0.140 4.140 16 C 0.173 3.827 17 N -0.617 5.617 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.941 5.941 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.274 1.274 25 H -0.293 1.293 26 C 0.129 3.871 27 C -0.166 4.166 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.037 0.963 44 H 0.249 0.751 45 H 0.036 0.964 46 H 0.020 0.980 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.699 9.413 8.004 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C -0.058 4.058 4 C 0.099 3.901 5 C -0.198 4.198 6 C -0.090 4.090 7 C -0.174 4.174 8 C -0.098 4.098 9 C 0.346 3.654 10 O -0.462 6.462 11 N -0.316 5.316 12 C -0.067 4.067 13 C 0.032 3.968 14 H 0.121 0.879 15 C -0.180 4.180 16 C 0.048 3.952 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.092 0.908 20 C -0.249 4.249 21 N -0.589 5.589 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.199 1.199 25 H -0.219 1.219 26 C 0.003 3.997 27 C -0.189 4.189 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.457 9.829 8.263 23.312 hybrid contribution 0.997 -0.203 -0.950 1.392 sum -18.460 9.625 7.313 22.066 Atomic orbital electron populations 1.21806 0.77629 1.03922 1.01918 1.46526 1.06169 1.02664 1.80361 1.21793 0.97181 0.84723 1.02137 1.17812 0.90261 0.87465 0.94565 1.21176 1.01254 0.90455 1.06930 1.21186 0.92938 0.98842 0.96071 1.21441 0.95517 0.96737 1.03726 1.19516 0.91077 0.95402 1.03847 1.18885 0.87882 0.78869 0.79770 1.90701 1.74247 1.43368 1.37933 1.47728 1.06030 1.37226 1.40613 1.22296 0.98453 0.92107 0.93810 1.21928 0.79015 0.98907 0.96975 0.87897 1.23250 1.01028 0.95215 0.98469 1.21515 0.98206 0.90114 0.85317 1.44712 1.71275 1.01425 1.17000 1.19308 1.30585 0.93371 0.93979 0.90845 1.25525 1.01872 0.95728 1.01801 1.70103 1.47704 0.99104 1.41998 0.85142 0.78344 0.76883 0.79381 1.21371 1.19916 1.21917 1.21683 0.96456 0.89222 0.92375 1.20665 0.93202 0.97128 1.07952 0.92823 0.89995 0.90306 0.91719 0.90994 0.91977 0.82954 0.82424 0.84697 0.91046 0.89582 0.91346 0.90245 0.89981 0.95437 0.94479 0.94178 0.94593 0.96230 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.36 127.77 1.32 2.24 16 2 N -0.65 -11.16 3.41 -747.41 -2.55 -13.71 16 3 C 0.08 1.28 10.59 127.77 1.35 2.64 16 4 C 0.20 4.41 6.53 38.17 0.25 4.66 16 5 C -0.18 -3.16 9.25 22.45 0.21 -2.96 16 6 C -0.07 -1.33 10.02 22.21 0.22 -1.11 16 7 C -0.15 -3.69 7.56 22.54 0.17 -3.52 16 8 C -0.09 -2.80 5.11 -20.10 -0.10 -2.90 16 9 C 0.56 19.73 7.31 86.79 0.63 20.37 16 10 O -0.58 -23.99 16.33 -3.89 -0.06 -24.05 16 11 N -0.59 -20.62 2.83 -819.35 -2.31 -22.94 16 12 C 0.08 2.47 7.07 127.77 0.90 3.37 16 13 C 0.14 5.15 3.57 46.18 0.16 5.32 16 14 H 0.10 3.90 6.99 -2.39 -0.02 3.88 16 15 C -0.14 -5.31 6.55 32.06 0.21 -5.10 16 16 C 0.17 8.15 4.57 86.93 0.40 8.55 16 17 N -0.62 -31.20 2.98 -691.56 -2.06 -33.26 16 18 C -0.24 -13.49 10.25 84.03 0.86 -12.63 16 19 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 20 C -0.06 -3.07 5.42 84.86 0.46 -2.61 16 21 N -0.94 -54.21 10.59 21.65 0.23 -53.98 16 22 Si 0.97 45.07 29.56 68.60 2.03 47.10 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 C 0.13 5.57 6.25 86.73 0.54 6.11 16 27 C -0.17 -4.55 8.87 22.67 0.20 -4.35 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.59 8.07 -2.39 -0.02 0.57 16 30 H 0.08 0.65 5.98 -2.39 -0.01 0.64 16 31 H 0.06 1.18 5.40 -2.39 -0.01 1.17 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.15 1.82 6.01 -2.91 -0.02 1.80 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.14 3.07 5.75 -2.91 -0.02 3.05 16 37 H 0.07 2.09 7.01 -2.39 -0.02 2.07 16 38 H 0.09 2.49 5.75 -2.38 -0.01 2.48 16 39 H 0.07 2.79 5.10 -2.39 -0.01 2.78 16 40 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 42 H 0.03 1.34 5.49 -2.38 -0.01 1.33 16 43 H 0.04 1.99 6.82 -2.39 -0.02 1.98 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.02 0.88 8.04 -2.39 -0.02 0.86 16 47 H 0.12 3.40 5.84 -2.91 -0.02 3.39 16 Total: -1.00 -69.30 361.62 4.05 -65.25 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.98 Total: 17.52 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.80 Total: 18.08 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.69 Total: -123.89 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.30 4.05 -65.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033622848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.479 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds