Wall clock time and date at job start Tue Mar 31 2020 11:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99973 * 2 1 4 4 C 1.39706 * 120.00124 * 180.02562 * 2 1 3 5 5 C 1.39021 * 120.00560 * 185.55576 * 4 2 1 6 6 C 1.38206 * 120.22351 * 180.02562 * 5 4 2 7 7 C 1.38029 * 120.22386 * 359.71791 * 6 5 4 8 8 C 1.39579 * 120.00354 * 0.55627 * 7 6 5 9 9 C 1.47856 * 120.10733 * 179.71823 * 8 7 6 10 10 O 1.21550 * 120.00251 * 34.71297 * 9 8 7 11 11 N 1.34781 * 119.99861 * 214.70791 * 9 8 7 12 12 C 1.46493 * 120.00191 * 5.35552 * 11 9 8 13 13 C 1.46505 * 119.99967 * 185.35142 * 11 9 8 14 14 H 1.09006 * 110.91530 * 3.90533 * 13 11 9 15 15 C 1.55159 * 111.00479 * 240.00421 * 13 11 9 16 16 C 1.54319 * 102.93994 * 206.42337 * 15 13 11 17 17 N 1.47030 * 107.27452 * 22.19090 * 16 15 13 18 18 C 1.36930 * 125.64896 * 181.01835 * 17 16 15 19 19 H 1.08002 * 120.00017 * 176.59571 * 18 17 16 20 20 C 1.38808 * 120.00095 * 356.60115 * 18 17 16 21 21 N 1.31625 * 119.99911 * 217.00562 * 20 18 17 22 22 Si 1.86802 * 120.00357 * 37.28359 * 20 18 17 23 23 H 1.48500 * 109.47052 * 267.31925 * 22 20 18 24 24 H 1.48501 * 109.46665 * 27.31531 * 22 20 18 25 25 H 1.48495 * 109.47206 * 147.31428 * 22 20 18 26 26 C 1.47429 * 108.69755 * 1.28877 * 17 16 15 27 27 C 1.38634 * 120.00460 * 5.57659 * 4 2 1 28 28 H 1.08996 * 109.47328 * 270.00248 * 1 2 3 29 29 H 1.08998 * 109.47195 * 29.99896 * 1 2 3 30 30 H 1.08996 * 109.46708 * 150.00045 * 1 2 3 31 31 H 1.09005 * 109.46982 * 185.46571 * 3 2 1 32 32 H 1.08999 * 109.47407 * 305.46822 * 3 2 1 33 33 H 1.08998 * 109.47202 * 65.46588 * 3 2 1 34 34 H 1.08001 * 119.88966 * 0.02562 * 5 4 2 35 35 H 1.07999 * 119.89396 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.99702 * 180.28188 * 7 6 5 37 37 H 1.09003 * 109.46910 * 274.01798 * 12 11 9 38 38 H 1.09002 * 109.46906 * 34.01614 * 12 11 9 39 39 H 1.09001 * 109.47220 * 154.01124 * 12 11 9 40 40 H 1.09001 * 110.71830 * 88.06089 * 15 13 11 41 41 H 1.08998 * 110.87018 * 324.85396 * 15 13 11 42 42 H 1.08999 * 109.88396 * 262.77487 * 16 15 13 43 43 H 1.09003 * 110.01412 * 141.68257 * 16 15 13 44 44 H 0.96998 * 119.99949 * 5.29231 * 21 20 18 45 45 H 1.09001 * 110.36735 * 94.48086 * 26 17 16 46 46 H 1.08996 * 110.36047 * 216.80382 * 26 17 16 47 47 H 1.08007 * 120.11336 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5488 -1.2129 0.1160 6 6 4.2445 -2.4071 0.1155 7 6 3.5680 -3.6052 0.0050 8 6 2.1777 -3.6129 -0.1183 9 6 1.4513 -4.8947 -0.2430 10 8 1.8497 -5.8791 0.3482 11 7 0.3472 -4.9715 -1.0122 12 6 -0.0667 -3.8193 -1.8167 13 6 -0.4390 -6.2073 -1.0439 14 1 -0.0401 -6.9403 -0.3426 15 6 -0.5025 -6.7894 -2.4807 16 6 -1.8240 -7.5864 -2.4726 17 7 -2.6603 -7.0341 -1.3968 18 6 -3.9072 -7.4789 -1.0471 19 1 -4.4199 -7.0409 -0.2035 20 6 -4.5123 -8.4930 -1.7768 21 7 -5.8103 -8.4638 -1.9929 22 14 -3.4856 -9.9030 -2.4455 23 1 -3.0488 -9.5848 -3.8287 24 1 -2.2931 -10.0996 -1.5827 25 1 -4.2988 -11.1455 -2.4567 26 6 -1.9366 -5.9179 -0.7612 27 6 1.4754 -2.4077 -0.1177 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3632 -0.8900 -0.5138 31 1 3.2651 1.0719 -0.0979 32 1 1.8628 1.8816 -0.8369 33 1 2.0096 1.7968 0.9349 34 1 4.0833 -0.2788 0.2073 35 1 5.3207 -2.4032 0.2059 36 1 4.1149 -4.5364 0.0096 37 1 -0.6814 -3.1544 -1.2098 38 1 0.8163 -3.2822 -2.1633 39 1 -0.6428 -4.1638 -2.6755 40 1 0.3447 -7.4493 -2.6672 41 1 -0.5383 -5.9910 -3.2219 42 1 -1.6204 -8.6398 -2.2801 43 1 -2.3320 -7.4762 -3.4307 44 1 -6.3321 -7.6968 -1.7094 45 1 -2.2332 -4.9695 -1.2091 46 1 -2.1243 -5.9066 0.3124 47 1 0.3991 -2.4077 -0.2083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033622852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:23 Heat of formation + Delta-G solvation = 58.850157 kcal Electronic energy + Delta-G solvation = -26936.950095 eV Core-core repulsion = 23314.875061 eV Total energy + Delta-G solvation = -3622.075035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60922 -39.21221 -37.61193 -36.22301 -35.05898 -32.56065 -31.48441 -30.27600 -29.47139 -28.65854 -28.02367 -26.93257 -25.10058 -24.22856 -23.11739 -21.70912 -20.74216 -20.13872 -19.19631 -17.73456 -17.43745 -17.08467 -16.16567 -15.96983 -15.60607 -15.43296 -15.13596 -15.06977 -14.38118 -14.10755 -13.89976 -13.53437 -13.30259 -13.12674 -12.96953 -12.91173 -12.70153 -12.62234 -12.52971 -12.36281 -12.13229 -11.93624 -11.69232 -11.27424 -11.12916 -11.03641 -10.93817 -10.61760 -10.16179 -10.10792 -9.80100 -9.66307 -9.25065 -9.09273 -8.50405 -8.28246 -7.57953 -7.10352 -6.40712 -3.10499 0.83505 1.35470 2.74114 2.84112 3.02861 3.47552 3.57975 3.71957 3.72416 4.34758 4.53540 4.63936 4.65916 4.83037 4.94154 4.97694 4.99163 5.05906 5.13627 5.16053 5.19988 5.25825 5.33736 5.35607 5.36912 5.42456 5.42939 5.48205 5.54950 5.65950 5.69917 5.88833 5.93445 5.93949 6.22019 6.24032 6.32777 6.43681 6.50775 6.51164 6.59182 6.79200 6.81065 6.89089 7.15725 7.47146 7.71776 8.21701 8.33921 9.01249 9.60837 10.27764 11.07460 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.003086 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.359000 B = 9069.604336 C = 9961.290993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.091 3.909 4 C 0.206 3.794 5 C -0.181 4.181 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.077 4.077 9 C 0.557 3.443 10 O -0.535 6.535 11 N -0.596 5.596 12 C 0.075 3.925 13 C 0.121 3.879 14 H 0.110 0.890 15 C -0.137 4.137 16 C 0.113 3.887 17 N -0.605 5.605 18 C -0.345 4.345 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.898 5.898 22 Si 1.039 2.961 23 H -0.293 1.293 24 H -0.289 1.289 25 H -0.298 1.298 26 C 0.135 3.865 27 C -0.171 4.171 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.266 0.734 45 H 0.029 0.971 46 H 0.044 0.956 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.958 20.871 1.066 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.352 5.352 3 C -0.052 4.052 4 C 0.105 3.895 5 C -0.203 4.203 6 C -0.098 4.098 7 C -0.144 4.144 8 C -0.081 4.081 9 C 0.345 3.655 10 O -0.412 6.412 11 N -0.328 5.328 12 C -0.067 4.067 13 C 0.017 3.983 14 H 0.128 0.872 15 C -0.176 4.176 16 C -0.012 4.012 17 N -0.333 5.333 18 C -0.471 4.471 19 H 0.098 0.902 20 C -0.209 4.209 21 N -0.536 5.536 22 Si 0.871 3.129 23 H -0.221 1.221 24 H -0.216 1.216 25 H -0.225 1.225 26 C 0.008 3.992 27 C -0.193 4.193 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.823 19.047 0.611 26.785 hybrid contribution 0.054 1.534 0.831 1.745 sum 18.877 20.581 1.443 27.964 Atomic orbital electron populations 1.21661 0.79249 1.02827 1.01476 1.46276 1.05066 1.02922 1.80970 1.21680 0.97549 0.84918 1.01044 1.17685 0.91210 0.85676 0.94935 1.20865 0.92236 0.98790 1.08419 1.20836 0.99680 0.91468 0.97854 1.20985 0.92587 0.98591 1.02210 1.19670 0.94257 0.92260 1.01875 1.18426 0.80076 0.87973 0.79000 1.90775 1.66523 1.37302 1.46596 1.47675 1.25892 1.14723 1.44461 1.22047 1.00665 0.88270 0.95764 1.22596 0.92103 0.85390 0.98198 0.87220 1.22907 0.98363 0.99915 0.96403 1.21613 0.89735 0.96428 0.93423 1.44730 1.16971 1.35157 1.36402 1.19881 0.89326 1.21889 1.15992 0.90191 1.25541 0.97035 1.01343 0.96958 1.70898 1.07712 1.34506 1.40500 0.84295 0.74848 0.77852 0.75928 1.22111 1.21631 1.22545 1.21797 0.88323 0.92099 0.96985 1.21205 1.00675 0.90156 1.07295 0.93203 0.91376 0.91166 0.90481 0.92547 0.93060 0.85682 0.85529 0.85409 0.92549 0.90881 0.90292 0.91114 0.91092 0.94701 0.94035 0.92408 0.95343 0.93723 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.35 59.85 0.62 1.24 16 2 N -0.64 -5.14 3.41 -187.59 -0.64 -5.78 16 3 C 0.09 0.49 10.59 59.85 0.63 1.13 16 4 C 0.21 2.02 6.53 -83.83 -0.55 1.48 16 5 C -0.18 -1.60 9.26 -39.30 -0.36 -1.97 16 6 C -0.08 -0.74 10.02 -39.67 -0.40 -1.14 16 7 C -0.12 -1.45 9.60 -39.16 -0.38 -1.82 16 8 C -0.08 -1.00 5.18 -104.99 -0.54 -1.55 16 9 C 0.56 8.92 7.37 -12.32 -0.09 8.83 16 10 O -0.53 -10.47 16.22 5.32 0.09 -10.38 16 11 N -0.60 -8.99 2.91 -172.45 -0.50 -9.49 16 12 C 0.08 0.87 7.44 59.84 0.45 1.31 16 13 C 0.12 2.19 3.45 -65.66 -0.23 1.96 16 14 H 0.11 2.22 7.05 -51.93 -0.37 1.85 16 15 C -0.14 -2.41 6.49 -24.90 -0.16 -2.57 16 16 C 0.11 2.53 4.98 -3.06 -0.02 2.51 16 17 N -0.60 -15.10 3.37 -169.93 -0.57 -15.67 16 18 C -0.34 -9.95 10.35 -15.06 -0.16 -10.11 16 19 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 20 C -0.01 -0.18 5.39 -17.43 -0.09 -0.28 16 21 N -0.90 -27.90 13.70 55.49 0.76 -27.14 16 22 Si 1.04 26.68 24.87 -169.99 -4.23 22.45 16 23 H -0.29 -7.14 6.93 56.52 0.39 -6.75 16 24 H -0.29 -7.18 6.41 56.52 0.36 -6.82 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 26 C 0.14 2.78 6.79 -2.41 -0.02 2.76 16 27 C -0.17 -1.90 6.98 -38.97 -0.27 -2.17 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.07 0.49 5.97 -51.93 -0.31 0.18 16 31 H 0.08 0.36 5.39 -51.93 -0.28 0.08 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.13 0.82 5.82 -52.49 -0.31 0.51 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.51 7.99 -52.49 -0.42 1.09 16 37 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 38 H 0.07 0.73 6.40 -51.93 -0.33 0.40 16 39 H 0.08 0.92 6.39 -51.93 -0.33 0.58 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.10 6.46 -51.93 -0.34 0.77 16 42 H 0.04 0.83 4.29 -51.93 -0.22 0.60 16 43 H 0.04 0.96 7.50 -51.93 -0.39 0.57 16 44 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 45 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 46 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.14 1.43 3.19 -52.48 -0.17 1.26 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -34.58 359.19 -7.98 -42.57 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.74 Total: -1.59 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.56 Total: -0.38 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.95 Total: -58.08 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.23 Total: 22.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.58 -7.98 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033622852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.415 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds