Wall clock time and date at job start Tue Mar 31 2020 11:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99973 * 2 1 4 4 C 1.39706 * 120.00124 * 180.02562 * 2 1 3 5 5 C 1.39021 * 120.00560 * 185.55576 * 4 2 1 6 6 C 1.38206 * 120.22351 * 180.02562 * 5 4 2 7 7 C 1.38029 * 120.22386 * 359.71791 * 6 5 4 8 8 C 1.39579 * 120.00354 * 0.55627 * 7 6 5 9 9 C 1.47856 * 120.10733 * 179.71823 * 8 7 6 10 10 O 1.21550 * 120.00251 * 34.71297 * 9 8 7 11 11 N 1.34781 * 119.99861 * 214.70791 * 9 8 7 12 12 C 1.46493 * 120.00191 * 5.35552 * 11 9 8 13 13 C 1.46505 * 119.99967 * 185.35142 * 11 9 8 14 14 H 1.09006 * 110.91530 * 3.90533 * 13 11 9 15 15 C 1.55159 * 111.00479 * 240.00421 * 13 11 9 16 16 C 1.54319 * 102.93994 * 206.42337 * 15 13 11 17 17 N 1.47030 * 107.27452 * 22.19090 * 16 15 13 18 18 C 1.36930 * 125.64896 * 181.01835 * 17 16 15 19 19 H 1.08002 * 120.00017 * 176.59571 * 18 17 16 20 20 C 1.38808 * 120.00095 * 356.60115 * 18 17 16 21 21 N 1.31625 * 119.99911 * 217.00562 * 20 18 17 22 22 Si 1.86802 * 120.00357 * 37.28359 * 20 18 17 23 23 H 1.48500 * 109.47052 * 267.31925 * 22 20 18 24 24 H 1.48501 * 109.46665 * 27.31531 * 22 20 18 25 25 H 1.48495 * 109.47206 * 147.31428 * 22 20 18 26 26 C 1.47429 * 108.69755 * 1.28877 * 17 16 15 27 27 C 1.38634 * 120.00460 * 5.57659 * 4 2 1 28 28 H 1.08996 * 109.47328 * 270.00248 * 1 2 3 29 29 H 1.08998 * 109.47195 * 29.99896 * 1 2 3 30 30 H 1.08996 * 109.46708 * 150.00045 * 1 2 3 31 31 H 1.09005 * 109.46982 * 185.46571 * 3 2 1 32 32 H 1.08999 * 109.47407 * 305.46822 * 3 2 1 33 33 H 1.08998 * 109.47202 * 65.46588 * 3 2 1 34 34 H 1.08001 * 119.88966 * 0.02562 * 5 4 2 35 35 H 1.07999 * 119.89396 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.99702 * 180.28188 * 7 6 5 37 37 H 1.09003 * 109.46910 * 274.01798 * 12 11 9 38 38 H 1.09002 * 109.46906 * 34.01614 * 12 11 9 39 39 H 1.09001 * 109.47220 * 154.01124 * 12 11 9 40 40 H 1.09001 * 110.71830 * 88.06089 * 15 13 11 41 41 H 1.08998 * 110.87018 * 324.85396 * 15 13 11 42 42 H 1.08999 * 109.88396 * 262.77487 * 16 15 13 43 43 H 1.09003 * 110.01412 * 141.68257 * 16 15 13 44 44 H 0.96998 * 119.99949 * 5.29231 * 21 20 18 45 45 H 1.09001 * 110.36735 * 94.48086 * 26 17 16 46 46 H 1.08996 * 110.36047 * 216.80382 * 26 17 16 47 47 H 1.08007 * 120.11336 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5488 -1.2129 0.1160 6 6 4.2445 -2.4071 0.1155 7 6 3.5680 -3.6052 0.0050 8 6 2.1777 -3.6129 -0.1183 9 6 1.4513 -4.8947 -0.2430 10 8 1.8497 -5.8791 0.3482 11 7 0.3472 -4.9715 -1.0122 12 6 -0.0667 -3.8193 -1.8167 13 6 -0.4390 -6.2073 -1.0439 14 1 -0.0401 -6.9403 -0.3426 15 6 -0.5025 -6.7894 -2.4807 16 6 -1.8240 -7.5864 -2.4726 17 7 -2.6603 -7.0341 -1.3968 18 6 -3.9072 -7.4789 -1.0471 19 1 -4.4199 -7.0409 -0.2035 20 6 -4.5123 -8.4930 -1.7768 21 7 -5.8103 -8.4638 -1.9929 22 14 -3.4856 -9.9030 -2.4455 23 1 -3.0488 -9.5848 -3.8287 24 1 -2.2931 -10.0996 -1.5827 25 1 -4.2988 -11.1455 -2.4567 26 6 -1.9366 -5.9179 -0.7612 27 6 1.4754 -2.4077 -0.1177 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3632 -0.8900 -0.5138 31 1 3.2651 1.0719 -0.0979 32 1 1.8628 1.8816 -0.8369 33 1 2.0096 1.7968 0.9349 34 1 4.0833 -0.2788 0.2073 35 1 5.3207 -2.4032 0.2059 36 1 4.1149 -4.5364 0.0096 37 1 -0.6814 -3.1544 -1.2098 38 1 0.8163 -3.2822 -2.1633 39 1 -0.6428 -4.1638 -2.6755 40 1 0.3447 -7.4493 -2.6672 41 1 -0.5383 -5.9910 -3.2219 42 1 -1.6204 -8.6398 -2.2801 43 1 -2.3320 -7.4762 -3.4307 44 1 -6.3321 -7.6968 -1.7094 45 1 -2.2332 -4.9695 -1.2091 46 1 -2.1243 -5.9066 0.3124 47 1 0.3991 -2.4077 -0.2083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033622852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:22 Heat of formation + Delta-G solvation = 36.177404 kcal Electronic energy + Delta-G solvation = -26937.933260 eV Core-core repulsion = 23314.875061 eV Total energy + Delta-G solvation = -3623.058199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68091 -40.20626 -39.11176 -36.93929 -36.49232 -34.51123 -32.57366 -31.15679 -30.98401 -29.73244 -29.07412 -28.03699 -26.07986 -25.62073 -24.29667 -22.67193 -22.45663 -21.39950 -20.36074 -19.53841 -18.67833 -18.15667 -17.37035 -17.00881 -16.72556 -16.39717 -16.14266 -15.89697 -15.73927 -15.55618 -15.20278 -14.97213 -14.59602 -14.47109 -14.14738 -13.96700 -13.80465 -13.57546 -13.35059 -13.22590 -13.06680 -13.02346 -12.93620 -12.82930 -12.52779 -12.45255 -12.37621 -11.96361 -11.90389 -11.59825 -11.20191 -11.01355 -10.83851 -10.51336 -9.92519 -9.75770 -9.17805 -8.72964 -8.22926 -5.35602 -0.03079 0.58879 1.40795 1.51686 1.68418 1.69981 1.81335 2.22995 2.52178 2.88605 2.89902 3.36246 3.41098 3.71255 3.76121 3.87518 3.99174 4.06535 4.15982 4.25662 4.30857 4.33705 4.37997 4.46080 4.49651 4.55480 4.58109 4.66765 4.71003 4.77907 4.80674 4.82736 4.88792 4.92447 4.94782 4.99691 5.05429 5.13096 5.19126 5.36917 5.47759 5.56486 5.61319 5.78124 6.07485 6.27278 6.32555 6.50658 6.78455 7.00207 7.45844 8.12290 8.76285 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.003086 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.359000 B = 9069.604336 C = 9961.290993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.642 5.642 3 C 0.085 3.915 4 C 0.202 3.798 5 C -0.175 4.175 6 C -0.073 4.073 7 C -0.140 4.140 8 C -0.095 4.095 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.592 5.592 12 C 0.072 3.928 13 C 0.134 3.866 14 H 0.085 0.915 15 C -0.122 4.122 16 C 0.106 3.894 17 N -0.626 5.626 18 C -0.340 4.340 19 H 0.051 0.949 20 C -0.057 4.057 21 N -0.931 5.931 22 Si 1.083 2.917 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.302 1.302 26 C 0.136 3.864 27 C -0.176 4.176 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.027 0.973 43 H 0.037 0.963 44 H 0.255 0.745 45 H 0.049 0.951 46 H 0.028 0.972 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.615 23.467 -0.089 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.354 5.354 3 C -0.057 4.057 4 C 0.100 3.900 5 C -0.197 4.197 6 C -0.091 4.091 7 C -0.161 4.161 8 C -0.099 4.099 9 C 0.345 3.655 10 O -0.462 6.462 11 N -0.323 5.323 12 C -0.070 4.070 13 C 0.029 3.971 14 H 0.103 0.897 15 C -0.160 4.160 16 C -0.019 4.019 17 N -0.354 5.354 18 C -0.468 4.468 19 H 0.069 0.931 20 C -0.254 4.254 21 N -0.571 5.571 22 Si 0.911 3.089 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.230 1.230 26 C 0.010 3.990 27 C -0.199 4.199 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.501 21.721 -0.559 30.568 hybrid contribution -0.775 0.933 1.298 1.776 sum 20.726 22.654 0.739 30.713 Atomic orbital electron populations 1.21770 0.78853 1.03644 1.01544 1.46518 1.05610 1.03120 1.80114 1.21875 0.97932 0.83902 1.01994 1.17841 0.91845 0.85958 0.94374 1.21223 0.91983 0.99787 1.06696 1.21119 1.01059 0.90535 0.96427 1.21060 0.92262 0.99415 1.03391 1.19473 0.94664 0.91226 1.04488 1.18978 0.79932 0.88613 0.78008 1.90741 1.67822 1.39172 1.48447 1.47656 1.25316 1.14598 1.44704 1.22288 1.01850 0.87256 0.95575 1.22125 0.90503 0.86381 0.98110 0.89715 1.22850 0.96291 1.00415 0.96461 1.21746 0.91388 0.96692 0.92034 1.44788 1.16624 1.36311 1.37665 1.19772 0.90977 1.21364 1.14676 0.93084 1.26657 0.97389 1.03422 0.97946 1.70989 1.08673 1.34515 1.42970 0.83660 0.73666 0.74721 0.76890 1.19542 1.20638 1.22966 1.21886 0.89776 0.91481 0.95889 1.21173 1.00811 0.90046 1.07835 0.93531 0.89508 0.91457 0.89506 0.91274 0.92352 0.82871 0.82745 0.86428 0.91126 0.88978 0.89879 0.89285 0.88314 0.95575 0.94534 0.93603 0.93374 0.95315 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.35 127.77 1.32 2.26 16 2 N -0.64 -8.30 3.41 -747.42 -2.55 -10.85 16 3 C 0.08 0.61 10.59 127.77 1.35 1.96 16 4 C 0.20 3.41 6.53 38.17 0.25 3.66 16 5 C -0.17 -2.48 9.26 22.45 0.21 -2.27 16 6 C -0.07 -1.15 10.02 22.21 0.22 -0.93 16 7 C -0.14 -3.15 9.60 22.54 0.22 -2.94 16 8 C -0.09 -2.39 5.18 -20.11 -0.10 -2.50 16 9 C 0.55 17.70 7.37 86.79 0.64 18.34 16 10 O -0.58 -23.35 16.22 -3.87 -0.06 -23.42 16 11 N -0.59 -17.24 2.91 -817.78 -2.38 -19.62 16 12 C 0.07 1.48 7.44 127.77 0.95 2.43 16 13 C 0.13 4.76 3.45 46.46 0.16 4.92 16 14 H 0.08 3.48 7.05 -2.38 -0.02 3.46 16 15 C -0.12 -4.01 6.49 31.78 0.21 -3.81 16 16 C 0.11 4.60 4.98 86.73 0.43 5.03 16 17 N -0.63 -31.35 3.37 -691.55 -2.33 -33.68 16 18 C -0.34 -20.13 10.35 84.03 0.87 -19.26 16 19 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 20 C -0.06 -3.42 5.39 84.86 0.46 -2.96 16 21 N -0.93 -59.35 13.70 21.65 0.30 -59.06 16 22 Si 1.08 54.30 24.87 68.60 1.71 56.01 16 23 H -0.27 -12.37 6.93 99.48 0.69 -11.68 16 24 H -0.28 -13.44 6.41 99.48 0.64 -12.80 16 25 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 26 C 0.14 5.57 6.79 86.93 0.59 6.16 16 27 C -0.18 -3.59 6.98 22.67 0.16 -3.43 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 30 H 0.07 0.78 5.97 -2.39 -0.01 0.77 16 31 H 0.09 0.44 5.39 -2.38 -0.01 0.42 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.15 1.28 5.82 -2.91 -0.02 1.26 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.12 2.80 7.99 -2.91 -0.02 2.78 16 37 H 0.07 1.28 6.43 -2.39 -0.02 1.26 16 38 H 0.09 1.60 6.40 -2.39 -0.02 1.58 16 39 H 0.08 1.67 6.39 -2.39 -0.02 1.65 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.10 2.72 6.46 -2.39 -0.02 2.71 16 42 H 0.03 1.20 4.29 -2.39 -0.01 1.19 16 43 H 0.04 1.63 7.50 -2.39 -0.02 1.61 16 44 H 0.26 16.23 8.73 -92.71 -0.81 15.42 16 45 H 0.05 1.80 6.98 -2.39 -0.02 1.79 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.14 2.67 3.19 -2.91 -0.01 2.66 16 Total: -1.00 -77.45 359.19 3.47 -73.97 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.86 Total: 9.98 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 7.93 Total: 6.66 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -6.96 Total: -123.21 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.06 Total: -23.42 kcal Atomic # 14 Polarization: 54.30 SS G_CDS: 1.71 Total: 56.01 kcal Total: -77.45 3.47 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033622852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.152 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds