Wall clock time and date at job start Tue Mar 31 2020 11:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00122 * 2 1 4 4 C 1.38878 * 110.99968 * 123.95045 * 2 1 3 5 5 C 1.38955 * 120.17537 * 300.23261 * 4 2 1 6 6 C 1.37954 * 120.06088 * 180.29887 * 5 4 2 7 7 C 1.38612 * 120.42692 * 359.72451 * 6 5 4 8 8 C 1.37751 * 120.34832 * 0.02562 * 7 6 5 9 9 C 1.39735 * 119.92574 * 359.97438 * 8 7 6 10 10 C 1.47436 * 120.20524 * 179.97438 * 9 8 7 11 11 O 1.21603 * 120.00139 * 223.04368 * 10 9 8 12 12 N 1.34783 * 119.99939 * 43.04459 * 10 9 8 13 13 C 1.46492 * 119.99823 * 5.41964 * 12 10 9 14 14 C 1.46503 * 119.99744 * 185.42276 * 12 10 9 15 15 H 1.08996 * 110.88686 * 3.87507 * 14 12 10 16 16 C 1.55154 * 111.00010 * 239.99739 * 14 12 10 17 17 C 1.54325 * 102.94465 * 206.42524 * 16 14 12 18 18 N 1.47023 * 107.26648 * 22.19125 * 17 16 14 19 19 C 1.36937 * 125.64636 * 181.02280 * 18 17 16 20 20 H 1.07996 * 120.00081 * 171.84165 * 19 18 17 21 21 C 1.38809 * 119.99991 * 351.84644 * 19 18 17 22 22 N 1.31616 * 120.00106 * 162.11392 * 21 19 18 23 23 Si 1.86799 * 120.00096 * 341.83705 * 21 19 18 24 24 H 1.48501 * 109.47074 * 186.22050 * 23 21 19 25 25 H 1.48500 * 109.47055 * 306.22261 * 23 21 19 26 26 H 1.48505 * 109.47166 * 66.21905 * 23 21 19 27 27 C 1.47422 * 108.70601 * 1.29170 * 18 17 16 28 28 H 1.08998 * 109.47256 * 296.05185 * 1 2 3 29 29 H 1.08999 * 109.47471 * 56.04709 * 1 2 3 30 30 H 1.09000 * 109.47090 * 176.04839 * 1 2 3 31 31 H 1.09002 * 109.47544 * 183.95597 * 3 2 1 32 32 H 1.09002 * 109.47020 * 303.95046 * 3 2 1 33 33 H 1.09000 * 109.47276 * 63.95406 * 3 2 1 34 34 H 1.07998 * 119.97044 * 359.97438 * 5 4 2 35 35 H 1.08004 * 119.78926 * 179.69392 * 6 5 4 36 36 H 1.07990 * 119.82927 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03436 * 179.97438 * 8 7 6 38 38 H 1.09007 * 109.47269 * 274.85868 * 13 12 10 39 39 H 1.09004 * 109.47653 * 34.86283 * 13 12 10 40 40 H 1.09006 * 109.47385 * 154.86498 * 13 12 10 41 41 H 1.09002 * 110.72222 * 88.06302 * 16 14 12 42 42 H 1.09007 * 110.72096 * 324.78863 * 16 14 12 43 43 H 1.08998 * 109.88064 * 262.78127 * 17 16 14 44 44 H 1.08994 * 110.01358 * 141.68495 * 17 16 14 45 45 H 0.97003 * 120.00012 * 354.64878 * 22 21 19 46 46 H 1.08999 * 110.36807 * 94.47826 * 27 18 17 47 47 H 1.09004 * 110.36883 * 216.80713 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9667 -0.7241 1.0755 5 6 1.6523 -0.3484 2.3758 6 6 2.1530 -1.0656 3.4426 7 6 2.9666 -2.1671 3.2279 8 6 3.2851 -2.5579 1.9459 9 6 2.7859 -1.8419 0.8547 10 6 3.1233 -2.2544 -0.5200 11 8 3.4209 -1.4172 -1.3503 12 7 3.1019 -3.5594 -0.8565 13 6 2.6297 -4.5565 0.1072 14 6 3.5509 -3.9805 -2.1859 15 1 3.9325 -3.1321 -2.7540 16 6 2.4113 -4.6981 -2.9563 17 6 3.1779 -5.6206 -3.9273 18 7 4.5198 -5.8287 -3.3638 19 6 5.5179 -6.5732 -3.9335 20 1 6.5111 -6.5595 -3.5094 21 6 5.2533 -7.3456 -5.0561 22 7 6.2444 -7.7739 -5.8088 23 14 3.4910 -7.7834 -5.4943 24 1 3.4861 -8.7311 -6.6376 25 1 2.8326 -8.4167 -4.3235 26 1 2.7534 -6.5505 -5.8701 27 6 4.6106 -5.1085 -2.0807 28 1 -0.3634 0.4513 0.9232 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.0197 0.5091 2.5517 35 1 1.9098 -0.7668 4.4516 36 1 3.3529 -2.7219 4.0700 37 1 3.9198 -3.4166 1.7845 38 1 3.4520 -4.8483 0.7606 39 1 1.8238 -4.1309 0.7052 40 1 2.2620 -5.4326 -0.4272 41 1 1.8046 -3.9785 -3.5060 42 1 1.7941 -5.2835 -2.2746 43 1 3.2562 -5.1459 -4.9054 44 1 2.6621 -6.5763 -4.0195 45 1 7.1524 -7.4866 -5.6247 46 1 4.3753 -5.7772 -1.2528 47 1 5.6060 -4.6826 -1.9543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033703325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:27 Heat of formation + Delta-G solvation = 59.368329 kcal Electronic energy + Delta-G solvation = -27381.007523 eV Core-core repulsion = 23758.954958 eV Total energy + Delta-G solvation = -3622.052565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75923 -39.18750 -37.42381 -36.83484 -34.87126 -32.47998 -31.39381 -30.20772 -29.42810 -28.18398 -27.82284 -26.84795 -25.02541 -24.20759 -23.31351 -21.55150 -20.92703 -20.31866 -19.11855 -17.58511 -17.43577 -16.95413 -16.40621 -15.92533 -15.37775 -15.24188 -14.96059 -14.87650 -14.37543 -14.26639 -13.79844 -13.56862 -13.25994 -13.06807 -12.87113 -12.68014 -12.56691 -12.44074 -12.40821 -12.19934 -12.09761 -11.95324 -11.90458 -11.42640 -11.36825 -11.04035 -10.91989 -10.50236 -9.97808 -9.69772 -9.36368 -9.20672 -9.00326 -8.98459 -8.69400 -8.65423 -8.33554 -7.03139 -6.29103 -3.18594 0.73292 0.96704 2.84377 3.06838 3.45900 3.51817 3.52786 3.58431 3.74635 4.44416 4.55247 4.65824 4.67249 4.82431 4.98515 5.02583 5.03847 5.05406 5.14599 5.24226 5.26059 5.28450 5.30691 5.37365 5.46176 5.50215 5.52744 5.59126 5.62806 5.72425 5.74053 5.92270 5.92810 5.95914 6.06207 6.12260 6.25583 6.40588 6.43234 6.48879 6.59952 6.64662 6.79696 6.84467 7.12686 7.56934 7.67964 8.35245 8.38066 9.06421 9.58291 10.24199 11.21445 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.003262 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.208543 B = 8582.632513 C = 9028.008677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.504 5.504 3 C 0.038 3.962 4 C 0.138 3.862 5 C -0.159 4.159 6 C -0.093 4.093 7 C -0.129 4.129 8 C -0.084 4.084 9 C -0.103 4.103 10 C 0.565 3.435 11 O -0.512 6.512 12 N -0.602 5.602 13 C 0.076 3.924 14 C 0.128 3.872 15 H 0.110 0.890 16 C -0.138 4.138 17 C 0.115 3.885 18 N -0.610 5.610 19 C -0.323 4.323 20 H 0.079 0.921 21 C -0.020 4.020 22 N -0.926 5.926 23 Si 1.066 2.934 24 H -0.301 1.301 25 H -0.299 1.299 26 H -0.284 1.284 27 C 0.131 3.869 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.027 0.973 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 15.237 20.625 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.224 5.224 3 C -0.109 4.109 4 C 0.043 3.957 5 C -0.179 4.179 6 C -0.111 4.111 7 C -0.147 4.147 8 C -0.103 4.103 9 C -0.107 4.107 10 C 0.352 3.648 11 O -0.386 6.386 12 N -0.335 5.335 13 C -0.067 4.067 14 C 0.024 3.976 15 H 0.128 0.872 16 C -0.177 4.177 17 C -0.010 4.010 18 N -0.338 5.338 19 C -0.450 4.450 20 H 0.097 0.903 21 C -0.220 4.220 22 N -0.567 5.567 23 Si 0.900 3.100 24 H -0.230 1.230 25 H -0.227 1.227 26 H -0.212 1.212 27 C 0.004 3.996 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.746 14.561 18.593 27.325 hybrid contribution 0.588 1.113 2.032 2.390 sum -13.158 15.673 20.625 29.055 Atomic orbital electron populations 1.22462 0.85822 1.02695 1.00760 1.59177 1.08003 1.14638 1.40619 1.22374 1.01633 0.86570 1.00285 1.18672 0.95128 0.93018 0.88903 1.21616 1.02266 1.01163 0.92891 1.21152 0.96358 0.94895 0.98744 1.21115 0.99135 0.97568 0.96874 1.21505 0.98301 0.98772 0.91715 1.19969 1.00548 0.96430 0.93756 1.17985 0.77695 0.81978 0.87117 1.90780 1.46846 1.50547 1.50458 1.47653 1.64672 1.06091 1.15129 1.21892 0.99123 0.92947 0.92700 1.22425 0.95005 0.98287 0.81870 0.87181 1.22926 0.97550 0.98651 0.98551 1.21947 0.86561 0.96118 0.96417 1.44744 1.10807 1.58588 1.19674 1.20159 0.89682 1.24001 1.11114 0.90328 1.25800 1.06032 0.96897 0.93256 1.70894 1.00608 1.47678 1.37548 0.83916 0.75421 0.75853 0.74843 1.22970 1.22727 1.21183 1.21818 0.96547 0.91642 0.89562 0.95276 0.90667 0.91283 0.90744 0.90789 0.95560 0.85872 0.85770 0.85326 0.84605 0.92485 0.91502 0.90378 0.90953 0.91289 0.93357 0.95350 0.92822 0.95565 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.33 60.06 0.56 0.83 16 2 N -0.50 -6.02 3.72 -186.64 -0.69 -6.71 16 3 C 0.04 0.38 9.38 60.06 0.56 0.95 16 4 C 0.14 1.60 4.70 -83.61 -0.39 1.21 16 5 C -0.16 -1.43 8.55 -39.42 -0.34 -1.77 16 6 C -0.09 -0.71 10.03 -39.55 -0.40 -1.10 16 7 C -0.13 -1.02 10.02 -39.62 -0.40 -1.42 16 8 C -0.08 -0.84 7.95 -39.20 -0.31 -1.15 16 9 C -0.10 -1.30 4.93 -104.80 -0.52 -1.82 16 10 C 0.56 8.94 7.03 -12.51 -0.09 8.85 16 11 O -0.51 -9.89 15.57 5.28 0.08 -9.81 16 12 N -0.60 -9.02 2.91 -172.60 -0.50 -9.53 16 13 C 0.08 0.87 7.56 59.84 0.45 1.33 16 14 C 0.13 2.31 3.45 -65.66 -0.23 2.08 16 15 H 0.11 2.22 7.04 -51.93 -0.37 1.85 16 16 C -0.14 -2.44 6.49 -24.90 -0.16 -2.60 16 17 C 0.11 2.56 4.61 -3.06 -0.01 2.54 16 18 N -0.61 -15.26 3.33 -169.94 -0.57 -15.83 16 19 C -0.32 -9.41 10.54 -15.06 -0.16 -9.57 16 20 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 21 C -0.02 -0.61 5.49 -17.43 -0.10 -0.71 16 22 N -0.93 -29.53 13.70 55.49 0.76 -28.77 16 23 Si 1.07 27.11 24.55 -169.99 -4.17 22.93 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.30 -7.28 6.91 56.52 0.39 -6.89 16 26 H -0.28 -6.64 5.38 56.52 0.30 -6.34 16 27 C 0.13 2.70 6.79 -2.41 -0.02 2.68 16 28 H 0.03 0.22 7.10 -51.93 -0.37 -0.15 16 29 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 33 H 0.03 0.22 7.34 -51.93 -0.38 -0.17 16 34 H 0.12 0.91 7.01 -52.49 -0.37 0.54 16 35 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.14 1.23 6.05 -52.49 -0.32 0.92 16 38 H 0.06 0.57 6.65 -51.92 -0.35 0.22 16 39 H 0.07 0.65 6.75 -51.93 -0.35 0.30 16 40 H 0.08 0.92 6.37 -51.93 -0.33 0.59 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.09 6.45 -51.93 -0.34 0.75 16 43 H 0.05 1.14 6.76 -51.93 -0.35 0.79 16 44 H 0.03 0.66 3.99 -51.93 -0.21 0.46 16 45 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 46 H 0.03 0.51 6.97 -51.93 -0.36 0.15 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -35.13 360.21 -8.35 -43.48 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.15 Total: -1.53 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.54 Total: 0.33 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -1.00 Total: -60.84 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -4.17 Total: 22.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.13 -8.35 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033703325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.847 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds