Wall clock time and date at job start Tue Mar 31 2020 11:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00122 * 2 1 4 4 C 1.38878 * 110.99968 * 123.95045 * 2 1 3 5 5 C 1.38955 * 120.17537 * 300.23261 * 4 2 1 6 6 C 1.37954 * 120.06088 * 180.29887 * 5 4 2 7 7 C 1.38612 * 120.42692 * 359.72451 * 6 5 4 8 8 C 1.37751 * 120.34832 * 0.02562 * 7 6 5 9 9 C 1.39735 * 119.92574 * 359.97438 * 8 7 6 10 10 C 1.47436 * 120.20524 * 179.97438 * 9 8 7 11 11 O 1.21603 * 120.00139 * 223.04368 * 10 9 8 12 12 N 1.34783 * 119.99939 * 43.04459 * 10 9 8 13 13 C 1.46492 * 119.99823 * 5.41964 * 12 10 9 14 14 C 1.46503 * 119.99744 * 185.42276 * 12 10 9 15 15 H 1.08996 * 110.88686 * 3.87507 * 14 12 10 16 16 C 1.55154 * 111.00010 * 239.99739 * 14 12 10 17 17 C 1.54325 * 102.94465 * 206.42524 * 16 14 12 18 18 N 1.47023 * 107.26648 * 22.19125 * 17 16 14 19 19 C 1.36937 * 125.64636 * 181.02280 * 18 17 16 20 20 H 1.07996 * 120.00081 * 171.84165 * 19 18 17 21 21 C 1.38809 * 119.99991 * 351.84644 * 19 18 17 22 22 N 1.31616 * 120.00106 * 162.11392 * 21 19 18 23 23 Si 1.86799 * 120.00096 * 341.83705 * 21 19 18 24 24 H 1.48501 * 109.47074 * 186.22050 * 23 21 19 25 25 H 1.48500 * 109.47055 * 306.22261 * 23 21 19 26 26 H 1.48505 * 109.47166 * 66.21905 * 23 21 19 27 27 C 1.47422 * 108.70601 * 1.29170 * 18 17 16 28 28 H 1.08998 * 109.47256 * 296.05185 * 1 2 3 29 29 H 1.08999 * 109.47471 * 56.04709 * 1 2 3 30 30 H 1.09000 * 109.47090 * 176.04839 * 1 2 3 31 31 H 1.09002 * 109.47544 * 183.95597 * 3 2 1 32 32 H 1.09002 * 109.47020 * 303.95046 * 3 2 1 33 33 H 1.09000 * 109.47276 * 63.95406 * 3 2 1 34 34 H 1.07998 * 119.97044 * 359.97438 * 5 4 2 35 35 H 1.08004 * 119.78926 * 179.69392 * 6 5 4 36 36 H 1.07990 * 119.82927 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03436 * 179.97438 * 8 7 6 38 38 H 1.09007 * 109.47269 * 274.85868 * 13 12 10 39 39 H 1.09004 * 109.47653 * 34.86283 * 13 12 10 40 40 H 1.09006 * 109.47385 * 154.86498 * 13 12 10 41 41 H 1.09002 * 110.72222 * 88.06302 * 16 14 12 42 42 H 1.09007 * 110.72096 * 324.78863 * 16 14 12 43 43 H 1.08998 * 109.88064 * 262.78127 * 17 16 14 44 44 H 1.08994 * 110.01358 * 141.68495 * 17 16 14 45 45 H 0.97003 * 120.00012 * 354.64878 * 22 21 19 46 46 H 1.08999 * 110.36807 * 94.47826 * 27 18 17 47 47 H 1.09004 * 110.36883 * 216.80713 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9667 -0.7241 1.0755 5 6 1.6523 -0.3484 2.3758 6 6 2.1530 -1.0656 3.4426 7 6 2.9666 -2.1671 3.2279 8 6 3.2851 -2.5579 1.9459 9 6 2.7859 -1.8419 0.8547 10 6 3.1233 -2.2544 -0.5200 11 8 3.4209 -1.4172 -1.3503 12 7 3.1019 -3.5594 -0.8565 13 6 2.6297 -4.5565 0.1072 14 6 3.5509 -3.9805 -2.1859 15 1 3.9325 -3.1321 -2.7540 16 6 2.4113 -4.6981 -2.9563 17 6 3.1779 -5.6206 -3.9273 18 7 4.5198 -5.8287 -3.3638 19 6 5.5179 -6.5732 -3.9335 20 1 6.5111 -6.5595 -3.5094 21 6 5.2533 -7.3456 -5.0561 22 7 6.2444 -7.7739 -5.8088 23 14 3.4910 -7.7834 -5.4943 24 1 3.4861 -8.7311 -6.6376 25 1 2.8326 -8.4167 -4.3235 26 1 2.7534 -6.5505 -5.8701 27 6 4.6106 -5.1085 -2.0807 28 1 -0.3634 0.4513 0.9232 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.0197 0.5091 2.5517 35 1 1.9098 -0.7668 4.4516 36 1 3.3529 -2.7219 4.0700 37 1 3.9198 -3.4166 1.7845 38 1 3.4520 -4.8483 0.7606 39 1 1.8238 -4.1309 0.7052 40 1 2.2620 -5.4326 -0.4272 41 1 1.8046 -3.9785 -3.5060 42 1 1.7941 -5.2835 -2.2746 43 1 3.2562 -5.1459 -4.9054 44 1 2.6621 -6.5763 -4.0195 45 1 7.1524 -7.4866 -5.6247 46 1 4.3753 -5.7772 -1.2528 47 1 5.6060 -4.6826 -1.9543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033703325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:26 Heat of formation + Delta-G solvation = 35.438206 kcal Electronic energy + Delta-G solvation = -27382.045211 eV Core-core repulsion = 23758.954958 eV Total energy + Delta-G solvation = -3623.090253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71183 -40.32454 -38.93568 -37.57675 -36.27677 -34.44871 -32.46096 -31.13943 -30.90123 -29.75093 -28.54739 -27.92397 -26.18377 -25.47790 -24.48239 -22.73968 -22.37599 -21.60210 -20.34467 -19.58593 -18.57841 -17.95487 -17.50963 -16.92743 -16.81685 -16.33107 -15.90852 -15.80612 -15.69591 -15.51204 -15.19968 -14.77738 -14.56472 -14.35133 -14.06313 -14.01613 -13.83842 -13.55026 -13.27053 -13.21169 -13.12526 -13.05902 -12.93712 -12.73648 -12.68276 -12.42933 -12.28056 -12.09530 -11.70289 -11.45629 -11.03922 -10.89552 -10.73406 -9.93060 -9.72569 -9.63921 -9.38272 -9.12945 -8.67712 -5.48893 -0.03000 0.30142 1.42166 1.50754 1.72049 1.79462 1.92995 2.55873 2.74246 2.86772 3.08601 3.30294 3.51116 3.71937 3.80010 3.90594 4.03040 4.10381 4.16330 4.22228 4.28414 4.33548 4.34462 4.39711 4.43793 4.55972 4.59125 4.60742 4.65679 4.67828 4.74652 4.84376 4.90019 4.92267 4.94122 4.94727 5.07169 5.13391 5.31064 5.36555 5.45573 5.47966 5.59751 5.79845 5.93569 6.06645 6.34642 6.46620 6.78612 7.20474 7.40499 8.04797 8.84754 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.003262 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.208543 B = 8582.632513 C = 9028.008677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.535 5.535 3 C 0.042 3.958 4 C 0.124 3.876 5 C -0.160 4.160 6 C -0.081 4.081 7 C -0.124 4.124 8 C -0.086 4.086 9 C -0.132 4.132 10 C 0.563 3.437 11 O -0.560 6.560 12 N -0.600 5.600 13 C 0.072 3.928 14 C 0.142 3.858 15 H 0.081 0.919 16 C -0.122 4.122 17 C 0.106 3.894 18 N -0.631 5.631 19 C -0.315 4.315 20 H 0.046 0.954 21 C -0.077 4.077 22 N -0.961 5.961 23 Si 1.106 2.894 24 H -0.311 1.311 25 H -0.277 1.277 26 H -0.253 1.253 27 C 0.133 3.867 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.247 0.753 46 H 0.050 0.950 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 15.884 24.122 33.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C -0.104 4.104 4 C 0.029 3.971 5 C -0.180 4.180 6 C -0.100 4.100 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.136 4.136 10 C 0.352 3.648 11 O -0.438 6.438 12 N -0.332 5.332 13 C -0.070 4.070 14 C 0.037 3.963 15 H 0.100 0.900 16 C -0.161 4.161 17 C -0.018 4.018 18 N -0.359 5.359 19 C -0.444 4.444 20 H 0.064 0.936 21 C -0.270 4.270 22 N -0.605 5.605 23 Si 0.932 3.068 24 H -0.240 1.240 25 H -0.204 1.204 26 H -0.178 1.178 27 C 0.007 3.993 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.159 0.841 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.977 15.228 22.162 31.801 hybrid contribution 1.687 0.992 1.087 2.238 sum -15.290 16.220 23.249 32.209 Atomic orbital electron populations 1.22454 0.84526 1.02488 1.01924 1.59109 1.09387 1.15294 1.41774 1.22311 1.00075 0.86460 1.01582 1.18850 0.95456 0.92849 0.89942 1.21800 1.02394 1.01798 0.91998 1.21580 0.94682 0.93826 0.99887 1.21463 0.98377 0.97593 0.96702 1.21606 0.98169 0.98769 0.91934 1.19847 1.03094 0.98331 0.92286 1.18585 0.76455 0.81530 0.88206 1.90746 1.49031 1.51804 1.52233 1.47660 1.64339 1.06838 1.14386 1.22144 1.00438 0.92086 0.92307 1.21932 0.94477 0.96260 0.83667 0.90039 1.22862 0.97043 0.98170 0.97991 1.22077 0.85615 0.97149 0.96977 1.44781 1.11271 1.58363 1.21491 1.20050 0.89646 1.23825 1.10834 0.93582 1.27148 1.09145 0.97191 0.93546 1.71002 1.00434 1.49779 1.39265 0.83466 0.71473 0.76733 0.75078 1.24035 1.20376 1.17793 1.21915 0.96708 0.92349 0.88361 0.93301 0.90362 0.92019 0.93172 0.90382 0.93397 0.84157 0.82492 0.82377 0.84137 0.90826 0.89425 0.90151 0.89409 0.88363 0.94943 0.94827 0.94371 0.93256 0.95326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.33 127.69 1.19 1.73 16 2 N -0.53 -12.30 3.72 -744.40 -2.77 -15.06 16 3 C 0.04 0.83 9.38 127.69 1.20 2.03 16 4 C 0.12 2.67 4.70 38.71 0.18 2.86 16 5 C -0.16 -2.33 8.55 22.37 0.19 -2.14 16 6 C -0.08 -0.87 10.03 22.29 0.22 -0.65 16 7 C -0.12 -1.44 10.02 22.24 0.22 -1.21 16 8 C -0.09 -1.48 7.95 22.52 0.18 -1.30 16 9 C -0.13 -3.15 4.93 -19.98 -0.10 -3.24 16 10 C 0.56 17.66 7.03 86.67 0.61 18.27 16 11 O -0.56 -22.38 15.57 -4.04 -0.06 -22.44 16 12 N -0.60 -17.22 2.91 -818.25 -2.38 -19.60 16 13 C 0.07 1.43 7.56 127.77 0.97 2.39 16 14 C 0.14 5.04 3.45 46.46 0.16 5.20 16 15 H 0.08 3.39 7.04 -2.39 -0.02 3.37 16 16 C -0.12 -4.03 6.49 31.78 0.21 -3.82 16 17 C 0.11 4.58 4.61 86.73 0.40 4.98 16 18 N -0.63 -31.62 3.33 -691.56 -2.30 -33.92 16 19 C -0.32 -18.92 10.54 84.03 0.89 -18.03 16 20 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 21 C -0.08 -4.74 5.49 84.86 0.47 -4.28 16 22 N -0.96 -63.45 13.70 21.65 0.30 -63.15 16 23 Si 1.11 54.36 24.55 68.60 1.68 56.04 16 24 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 25 H -0.28 -12.53 6.91 99.48 0.69 -11.85 16 26 H -0.25 -11.08 5.38 99.48 0.54 -10.55 16 27 C 0.13 5.43 6.79 86.93 0.59 6.02 16 28 H 0.05 0.60 7.10 -2.39 -0.02 0.59 16 29 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 33 H 0.05 0.70 7.34 -2.39 -0.02 0.68 16 34 H 0.14 1.51 7.01 -2.91 -0.02 1.49 16 35 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.16 0.91 8.06 -2.92 -0.02 0.89 16 37 H 0.14 2.18 6.05 -2.91 -0.02 2.16 16 38 H 0.07 1.23 6.65 -2.38 -0.02 1.22 16 39 H 0.09 1.42 6.75 -2.38 -0.02 1.40 16 40 H 0.08 1.58 6.37 -2.38 -0.02 1.57 16 41 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.10 2.70 6.45 -2.38 -0.02 2.68 16 43 H 0.03 1.50 6.76 -2.39 -0.02 1.48 16 44 H 0.03 1.46 3.99 -2.39 -0.01 1.45 16 45 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 46 H 0.05 1.82 6.97 -2.39 -0.02 1.81 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.78 360.21 2.78 -78.00 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.74 Total: 11.34 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 7.57 Total: 8.80 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -7.15 Total: -131.74 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 1.68 Total: 56.04 kcal Total: -80.78 2.78 -78.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033703325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.438 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds