Wall clock time and date at job start Tue Mar 31 2020 11:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99843 * 2 1 4 4 C 1.38871 * 111.00327 * 123.95619 * 2 1 3 5 5 C 1.38956 * 120.17052 * 299.99724 * 4 2 1 6 6 C 1.37966 * 120.06232 * 179.97438 * 5 4 2 7 7 C 1.38614 * 120.42149 * 0.30095 * 6 5 4 8 8 C 1.37755 * 120.34912 * 359.44225 * 7 6 5 9 9 C 1.39731 * 119.92606 * 0.53069 * 8 7 6 10 10 C 1.47434 * 120.20526 * 179.72160 * 9 8 7 11 11 O 1.21602 * 119.99915 * 126.98518 * 10 9 8 12 12 N 1.34781 * 120.00266 * 306.98334 * 10 9 8 13 13 C 1.46503 * 119.99645 * 4.90002 * 12 10 9 14 14 C 1.46501 * 120.00006 * 184.90179 * 12 10 9 15 15 H 1.09002 * 110.64082 * 1.68986 * 14 12 10 16 16 C 1.55162 * 110.71688 * 125.02507 * 14 12 10 17 17 C 1.54912 * 101.57844 * 153.86333 * 16 14 12 18 18 N 1.47427 * 104.83486 * 322.99318 * 17 16 14 19 19 C 1.36939 * 125.64876 * 204.09921 * 18 17 16 20 20 H 1.08001 * 119.99908 * 180.02562 * 19 18 17 21 21 C 1.38806 * 119.99759 * 0.03080 * 19 18 17 22 22 N 1.31619 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99764 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46821 * 90.00385 * 23 21 19 25 25 H 1.48501 * 109.47210 * 209.99856 * 23 21 19 26 26 H 1.48494 * 109.47344 * 330.00058 * 23 21 19 27 27 C 1.47020 * 108.70326 * 24.12281 * 18 17 16 28 28 H 1.08999 * 109.47216 * 296.04257 * 1 2 3 29 29 H 1.09003 * 109.47589 * 56.04581 * 1 2 3 30 30 H 1.09007 * 109.47276 * 176.04354 * 1 2 3 31 31 H 1.09000 * 109.46973 * 183.95800 * 3 2 1 32 32 H 1.09000 * 109.47048 * 303.95648 * 3 2 1 33 33 H 1.08996 * 109.47138 * 63.95492 * 3 2 1 34 34 H 1.07996 * 119.97388 * 359.97438 * 5 4 2 35 35 H 1.07993 * 119.79046 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.82153 * 179.70138 * 7 6 5 37 37 H 1.07997 * 120.03351 * 180.27493 * 8 7 6 38 38 H 1.08997 * 109.46649 * 125.43485 * 13 12 10 39 39 H 1.08997 * 109.47075 * 245.42828 * 13 12 10 40 40 H 1.08996 * 109.47311 * 5.43189 * 13 12 10 41 41 H 1.08995 * 111.00435 * 271.93190 * 16 14 12 42 42 H 1.08997 * 111.00443 * 35.79301 * 16 14 12 43 43 H 1.09000 * 110.36880 * 204.15000 * 17 16 14 44 44 H 1.09001 * 110.45761 * 81.87243 * 17 16 14 45 45 H 0.97000 * 119.99794 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.88643 * 239.53079 * 27 18 17 47 47 H 1.08999 * 109.88173 * 118.35993 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9667 -0.7241 1.0754 5 6 1.6563 -0.3456 2.3758 6 6 2.1516 -1.0669 3.4425 7 6 2.9655 -2.1682 3.2277 8 6 3.2798 -2.5618 1.9456 9 6 2.7858 -1.8421 0.8545 10 6 3.1233 -2.2543 -0.5202 11 8 2.2389 -2.4385 -1.3342 12 7 4.4122 -2.4270 -0.8748 13 6 5.4706 -2.3102 0.1314 14 6 4.7546 -2.7314 -2.2663 15 1 3.8586 -2.7533 -2.8865 16 6 5.7822 -1.7066 -2.8154 17 6 6.4883 -2.5347 -3.9180 18 7 6.5744 -3.8998 -3.3679 19 6 7.4878 -4.8518 -3.7347 20 1 7.4676 -5.8268 -3.2704 21 6 8.4397 -4.5638 -4.7030 22 7 8.4647 -3.3754 -5.2683 23 14 9.6852 -5.8628 -5.2039 24 1 9.1410 -6.6616 -6.3313 25 1 10.9457 -5.2024 -5.6284 26 1 9.9590 -6.7569 -4.0504 27 6 5.5170 -4.0698 -2.3607 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.0268 0.5141 2.5518 35 1 1.9072 -0.7690 4.4514 36 1 3.3518 -2.7229 4.0699 37 1 3.9108 -3.4233 1.7840 38 1 6.0776 -3.2155 0.1269 39 1 6.0990 -1.4503 -0.1004 40 1 5.0227 -2.1780 1.1163 41 1 5.2790 -0.8384 -3.2409 42 1 6.4873 -1.4067 -2.0402 43 1 7.4857 -2.1391 -4.1093 44 1 5.8975 -2.5315 -4.8340 45 1 9.1302 -3.1741 -5.9447 46 1 5.9604 -4.3128 -1.3950 47 1 4.8361 -4.8633 -2.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033703327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:30 Heat of formation + Delta-G solvation = 55.202820 kcal Electronic energy + Delta-G solvation = -27338.169653 eV Core-core repulsion = 23715.936458 eV Total energy + Delta-G solvation = -3622.233195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70332 -39.02309 -37.08028 -36.79068 -34.63964 -32.34481 -31.19951 -30.16992 -29.12484 -27.77402 -27.45990 -26.55481 -25.01663 -24.45752 -23.44555 -21.50098 -20.38648 -20.15573 -18.83594 -17.44223 -16.93830 -16.90216 -16.18457 -15.86523 -15.21181 -14.99937 -14.69712 -14.64716 -14.24427 -14.06336 -13.86037 -13.63298 -13.07988 -12.96306 -12.75385 -12.50344 -12.45513 -12.22246 -12.13707 -11.87217 -11.83557 -11.68737 -11.48680 -11.34690 -10.99649 -10.78803 -10.75678 -10.37584 -10.09253 -9.77339 -9.58643 -9.48861 -9.07852 -8.92627 -8.63659 -8.62562 -8.19053 -6.81125 -5.62904 -3.05026 0.83632 1.00320 2.92222 3.20790 3.41824 3.46559 3.48444 3.56245 3.63275 4.50751 4.54659 4.62237 4.72924 4.88554 5.06014 5.07576 5.09782 5.29928 5.32035 5.34189 5.41761 5.46476 5.49931 5.57166 5.62671 5.67670 5.68905 5.75599 5.82587 5.86998 5.98746 6.04223 6.11831 6.16738 6.32842 6.44106 6.48117 6.62469 6.65398 6.69130 6.78491 7.07919 7.18763 7.54164 7.64514 7.73015 7.87865 8.37385 8.49401 9.23914 9.84661 10.49462 11.40719 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003095 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.433658 B = 9044.198744 C = 9623.331851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.507 5.507 3 C 0.030 3.970 4 C 0.135 3.865 5 C -0.156 4.156 6 C -0.096 4.096 7 C -0.127 4.127 8 C -0.087 4.087 9 C -0.098 4.098 10 C 0.566 3.434 11 O -0.521 6.521 12 N -0.597 5.597 13 C 0.061 3.939 14 C 0.130 3.870 15 H 0.103 0.897 16 C -0.151 4.151 17 C 0.154 3.846 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.129 3.871 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.014 0.986 45 H 0.252 0.748 46 H 0.028 0.972 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 9.198 18.603 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.227 5.227 3 C -0.116 4.116 4 C 0.040 3.960 5 C -0.177 4.177 6 C -0.114 4.114 7 C -0.145 4.145 8 C -0.106 4.106 9 C -0.102 4.102 10 C 0.353 3.647 11 O -0.396 6.396 12 N -0.329 5.329 13 C -0.082 4.082 14 C 0.027 3.973 15 H 0.121 0.879 16 C -0.190 4.190 17 C 0.029 3.971 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.002 3.998 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.748 8.854 17.541 23.422 hybrid contribution 0.404 -0.247 0.497 0.687 sum -12.344 8.608 18.039 23.492 Atomic orbital electron populations 1.22397 0.85205 1.03113 1.00376 1.59170 1.08903 1.13897 1.40723 1.22459 1.01218 0.87227 1.00741 1.18620 0.94987 0.93534 0.88906 1.21608 1.02059 1.01114 0.92874 1.21129 0.96562 0.95025 0.98729 1.21104 0.99070 0.97579 0.96791 1.21337 0.98148 0.99403 0.91733 1.19988 0.99644 0.96609 0.93928 1.17959 0.82532 0.77238 0.86960 1.90764 1.46947 1.50129 1.51778 1.47723 1.05606 1.69731 1.09890 1.22123 0.91447 1.02733 0.91867 1.22194 0.98770 0.96013 0.80300 0.87923 1.23344 0.97567 0.97629 1.00478 1.21929 1.01208 0.83305 0.90690 1.44439 1.33139 1.11671 1.43637 1.19071 1.05922 0.92861 1.17087 0.90501 1.24785 0.99634 0.97257 0.98979 1.69791 1.37233 1.19765 1.30286 0.86067 0.80673 0.80347 0.78373 1.21635 1.21676 1.20725 1.21522 0.90788 0.94066 0.93414 0.95469 0.90774 0.90787 0.91128 0.90640 0.95263 0.85873 0.85772 0.85293 0.84631 0.91115 0.92178 0.90017 0.92144 0.91775 0.87368 0.96775 0.93730 0.95467 0.95770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 9.34 60.06 0.56 0.93 16 2 N -0.51 -6.38 4.04 -186.64 -0.75 -7.13 16 3 C 0.03 0.30 9.38 60.07 0.56 0.87 16 4 C 0.13 1.66 4.71 -83.62 -0.39 1.26 16 5 C -0.16 -1.49 8.55 -39.41 -0.34 -1.83 16 6 C -0.10 -0.78 10.03 -39.54 -0.40 -1.18 16 7 C -0.13 -1.08 10.02 -39.62 -0.40 -1.47 16 8 C -0.09 -0.93 7.33 -39.20 -0.29 -1.22 16 9 C -0.10 -1.32 5.06 -104.80 -0.53 -1.85 16 10 C 0.57 9.60 6.82 -12.51 -0.09 9.51 16 11 O -0.52 -10.64 16.02 5.28 0.08 -10.55 16 12 N -0.60 -9.88 2.88 -173.09 -0.50 -10.38 16 13 C 0.06 0.82 9.20 59.85 0.55 1.37 16 14 C 0.13 2.55 3.36 -66.09 -0.22 2.33 16 15 H 0.10 2.18 7.01 -51.93 -0.36 1.82 16 16 C -0.15 -3.00 6.63 -24.58 -0.16 -3.16 16 17 C 0.15 3.81 5.89 -2.53 -0.01 3.80 16 18 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 19 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -26.98 10.09 55.49 0.56 -26.42 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.13 2.83 6.88 -3.06 -0.02 2.81 16 28 H 0.03 0.23 7.11 -51.93 -0.37 -0.14 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 30 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.03 0.24 7.33 -51.93 -0.38 -0.14 16 34 H 0.12 0.97 7.01 -52.49 -0.37 0.60 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.14 1.32 7.09 -52.49 -0.37 0.94 16 38 H 0.07 0.97 6.53 -51.93 -0.34 0.63 16 39 H 0.06 0.80 6.96 -51.93 -0.36 0.43 16 40 H 0.08 0.89 3.92 -51.93 -0.20 0.69 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.22 6.46 -51.93 -0.34 0.88 16 43 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.03 0.58 6.22 -51.93 -0.32 0.25 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -33.24 366.95 -9.17 -42.42 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.07 Total: 0.32 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.42 Total: 5.38 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -1.27 Total: -60.24 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.24 -9.17 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033703327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.619 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds