Wall clock time and date at job start Tue Mar 31 2020 11:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99843 * 2 1 4 4 C 1.38871 * 111.00327 * 123.95619 * 2 1 3 5 5 C 1.38956 * 120.17052 * 299.99724 * 4 2 1 6 6 C 1.37966 * 120.06232 * 179.97438 * 5 4 2 7 7 C 1.38614 * 120.42149 * 0.30095 * 6 5 4 8 8 C 1.37755 * 120.34912 * 359.44225 * 7 6 5 9 9 C 1.39731 * 119.92606 * 0.53069 * 8 7 6 10 10 C 1.47434 * 120.20526 * 179.72160 * 9 8 7 11 11 O 1.21602 * 119.99915 * 126.98518 * 10 9 8 12 12 N 1.34781 * 120.00266 * 306.98334 * 10 9 8 13 13 C 1.46503 * 119.99645 * 4.90002 * 12 10 9 14 14 C 1.46501 * 120.00006 * 184.90179 * 12 10 9 15 15 H 1.09002 * 110.64082 * 1.68986 * 14 12 10 16 16 C 1.55162 * 110.71688 * 125.02507 * 14 12 10 17 17 C 1.54912 * 101.57844 * 153.86333 * 16 14 12 18 18 N 1.47427 * 104.83486 * 322.99318 * 17 16 14 19 19 C 1.36939 * 125.64876 * 204.09921 * 18 17 16 20 20 H 1.08001 * 119.99908 * 180.02562 * 19 18 17 21 21 C 1.38806 * 119.99759 * 0.03080 * 19 18 17 22 22 N 1.31619 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99764 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46821 * 90.00385 * 23 21 19 25 25 H 1.48501 * 109.47210 * 209.99856 * 23 21 19 26 26 H 1.48494 * 109.47344 * 330.00058 * 23 21 19 27 27 C 1.47020 * 108.70326 * 24.12281 * 18 17 16 28 28 H 1.08999 * 109.47216 * 296.04257 * 1 2 3 29 29 H 1.09003 * 109.47589 * 56.04581 * 1 2 3 30 30 H 1.09007 * 109.47276 * 176.04354 * 1 2 3 31 31 H 1.09000 * 109.46973 * 183.95800 * 3 2 1 32 32 H 1.09000 * 109.47048 * 303.95648 * 3 2 1 33 33 H 1.08996 * 109.47138 * 63.95492 * 3 2 1 34 34 H 1.07996 * 119.97388 * 359.97438 * 5 4 2 35 35 H 1.07993 * 119.79046 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.82153 * 179.70138 * 7 6 5 37 37 H 1.07997 * 120.03351 * 180.27493 * 8 7 6 38 38 H 1.08997 * 109.46649 * 125.43485 * 13 12 10 39 39 H 1.08997 * 109.47075 * 245.42828 * 13 12 10 40 40 H 1.08996 * 109.47311 * 5.43189 * 13 12 10 41 41 H 1.08995 * 111.00435 * 271.93190 * 16 14 12 42 42 H 1.08997 * 111.00443 * 35.79301 * 16 14 12 43 43 H 1.09000 * 110.36880 * 204.15000 * 17 16 14 44 44 H 1.09001 * 110.45761 * 81.87243 * 17 16 14 45 45 H 0.97000 * 119.99794 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.88643 * 239.53079 * 27 18 17 47 47 H 1.08999 * 109.88173 * 118.35993 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9667 -0.7241 1.0754 5 6 1.6563 -0.3456 2.3758 6 6 2.1516 -1.0669 3.4425 7 6 2.9655 -2.1682 3.2277 8 6 3.2798 -2.5618 1.9456 9 6 2.7858 -1.8421 0.8545 10 6 3.1233 -2.2543 -0.5202 11 8 2.2389 -2.4385 -1.3342 12 7 4.4122 -2.4270 -0.8748 13 6 5.4706 -2.3102 0.1314 14 6 4.7546 -2.7314 -2.2663 15 1 3.8586 -2.7533 -2.8865 16 6 5.7822 -1.7066 -2.8154 17 6 6.4883 -2.5347 -3.9180 18 7 6.5744 -3.8998 -3.3679 19 6 7.4878 -4.8518 -3.7347 20 1 7.4676 -5.8268 -3.2704 21 6 8.4397 -4.5638 -4.7030 22 7 8.4647 -3.3754 -5.2683 23 14 9.6852 -5.8628 -5.2039 24 1 9.1410 -6.6616 -6.3313 25 1 10.9457 -5.2024 -5.6284 26 1 9.9590 -6.7569 -4.0504 27 6 5.5170 -4.0698 -2.3607 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.0268 0.5141 2.5518 35 1 1.9072 -0.7690 4.4514 36 1 3.3518 -2.7229 4.0699 37 1 3.9108 -3.4233 1.7840 38 1 6.0776 -3.2155 0.1269 39 1 6.0990 -1.4503 -0.1004 40 1 5.0227 -2.1780 1.1163 41 1 5.2790 -0.8384 -3.2409 42 1 6.4873 -1.4067 -2.0402 43 1 7.4857 -2.1391 -4.1093 44 1 5.8975 -2.5315 -4.8340 45 1 9.1302 -3.1741 -5.9447 46 1 5.9604 -4.3128 -1.3950 47 1 4.8361 -4.8633 -2.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033703327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:30 Heat of formation + Delta-G solvation = 34.693673 kcal Electronic energy + Delta-G solvation = -27339.058997 eV Core-core repulsion = 23715.936458 eV Total energy + Delta-G solvation = -3623.122538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72992 -40.23692 -38.73250 -37.59251 -36.17853 -34.14787 -32.32154 -30.99099 -30.91873 -29.12662 -28.54982 -27.84320 -26.58111 -25.61061 -24.50017 -22.49010 -22.11358 -21.56282 -20.20115 -18.97083 -18.54947 -17.91159 -17.33214 -16.91105 -16.69289 -16.08392 -15.99592 -15.76734 -15.68509 -15.34744 -15.10100 -14.64176 -14.58435 -14.22021 -13.96065 -13.72271 -13.59894 -13.34341 -13.27536 -13.23494 -12.98292 -12.86469 -12.71102 -12.69159 -12.65448 -12.39382 -12.17221 -12.12445 -12.00881 -11.82260 -11.39988 -10.88538 -10.75804 -9.89395 -9.71765 -9.57176 -9.41867 -8.92438 -7.77770 -5.23911 0.01986 0.28169 1.47666 1.50109 1.58720 1.72280 1.97656 2.50540 2.71273 2.85906 3.32331 3.49724 3.71704 3.88850 3.90771 3.97629 4.10690 4.16354 4.21582 4.26017 4.33945 4.35428 4.42095 4.50440 4.56083 4.59214 4.62760 4.66321 4.67436 4.81805 4.88492 4.91721 4.94245 4.96949 4.99127 5.08960 5.31881 5.37265 5.44788 5.47262 5.56057 5.59126 5.76033 5.79737 5.92808 6.27538 6.35746 6.47370 7.08475 7.19270 7.74250 8.38713 9.24129 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003095 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.433658 B = 9044.198744 C = 9623.331851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.539 5.539 3 C 0.033 3.967 4 C 0.121 3.879 5 C -0.156 4.156 6 C -0.083 4.083 7 C -0.120 4.120 8 C -0.093 4.093 9 C -0.129 4.129 10 C 0.566 3.434 11 O -0.567 6.567 12 N -0.597 5.597 13 C 0.061 3.939 14 C 0.145 3.855 15 H 0.081 0.919 16 C -0.130 4.130 17 C 0.158 3.842 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.984 3.016 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.267 1.267 27 C 0.131 3.869 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.082 0.918 44 H -0.015 1.015 45 H 0.249 0.751 46 H 0.043 0.957 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 9.662 22.213 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.260 5.260 3 C -0.113 4.113 4 C 0.026 3.974 5 C -0.176 4.176 6 C -0.102 4.102 7 C -0.137 4.137 8 C -0.111 4.111 9 C -0.133 4.133 10 C 0.355 3.645 11 O -0.446 6.446 12 N -0.328 5.328 13 C -0.081 4.081 14 C 0.040 3.960 15 H 0.099 0.901 16 C -0.169 4.169 17 C 0.033 3.967 18 N -0.348 5.348 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.812 3.188 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.192 1.192 27 C 0.005 3.995 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.003 0.997 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -12.858 9.323 21.199 26.489 hybrid contribution 0.367 -0.387 -0.562 0.775 sum -12.491 8.936 20.637 25.725 Atomic orbital electron populations 1.22352 0.84483 1.02060 1.01790 1.59103 1.09874 1.15139 1.41929 1.22439 1.00350 0.86472 1.02013 1.18796 0.95107 0.93463 0.90044 1.21808 1.02096 1.01817 0.91888 1.21585 0.94763 0.93876 0.99937 1.21474 0.98190 0.97512 0.96543 1.21457 0.98349 0.99322 0.92010 1.19851 1.02466 0.98719 0.92255 1.18595 0.81767 0.75873 0.88243 1.90727 1.48155 1.52057 1.53643 1.47724 1.06640 1.69528 1.08934 1.22306 0.90722 1.02677 0.92381 1.21726 0.97271 0.94585 0.82379 0.90114 1.23123 0.97428 0.97270 0.99117 1.21699 0.99742 0.83876 0.91368 1.44703 1.33786 1.11873 1.44412 1.19449 1.06512 0.93577 1.17453 0.90070 1.25657 1.01565 0.99391 0.99096 1.70030 1.37752 1.21463 1.30540 0.85004 0.77867 0.77872 0.78104 1.21649 1.21690 1.19181 1.21583 0.89887 0.95091 0.92958 0.93115 0.90337 0.92915 0.92371 0.90296 0.93112 0.83993 0.82280 0.82094 0.84090 0.91342 0.91837 0.87164 0.90777 0.90316 0.89963 0.99743 0.94173 0.93874 0.96993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.34 127.69 1.19 1.99 16 2 N -0.54 -13.26 4.04 -744.39 -3.00 -16.27 16 3 C 0.03 0.63 9.38 127.69 1.20 1.83 16 4 C 0.12 2.80 4.71 38.71 0.18 2.98 16 5 C -0.16 -2.45 8.55 22.38 0.19 -2.26 16 6 C -0.08 -0.96 10.03 22.30 0.22 -0.74 16 7 C -0.12 -1.50 10.02 22.25 0.22 -1.28 16 8 C -0.09 -1.75 7.33 22.52 0.17 -1.58 16 9 C -0.13 -3.36 5.06 -19.98 -0.10 -3.46 16 10 C 0.57 19.42 6.82 86.67 0.59 20.01 16 11 O -0.57 -24.17 16.02 -4.04 -0.06 -24.24 16 12 N -0.60 -19.72 2.88 -819.80 -2.36 -22.09 16 13 C 0.06 1.53 9.20 127.77 1.18 2.71 16 14 C 0.15 5.82 3.36 46.18 0.16 5.97 16 15 H 0.08 3.62 7.01 -2.39 -0.02 3.60 16 16 C -0.13 -5.25 6.63 31.99 0.21 -5.04 16 17 C 0.16 8.18 5.89 86.86 0.51 8.69 16 18 N -0.62 -33.33 3.39 -691.98 -2.35 -35.68 16 19 C -0.24 -13.81 10.27 84.03 0.86 -12.95 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 22 N -0.95 -57.02 10.09 21.65 0.22 -56.81 16 23 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 C 0.13 5.88 6.88 86.73 0.60 6.48 16 28 H 0.05 0.75 7.11 -2.39 -0.02 0.74 16 29 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 30 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 33 H 0.05 0.72 7.33 -2.39 -0.02 0.70 16 34 H 0.14 1.64 7.01 -2.91 -0.02 1.62 16 35 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.14 2.41 7.09 -2.91 -0.02 2.39 16 38 H 0.07 1.77 6.53 -2.39 -0.02 1.75 16 39 H 0.06 1.57 6.96 -2.39 -0.02 1.56 16 40 H 0.11 2.17 3.92 -2.39 -0.01 2.16 16 41 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.08 2.95 6.46 -2.39 -0.02 2.94 16 43 H 0.08 4.70 5.87 -2.39 -0.01 4.69 16 44 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.04 1.81 6.22 -2.39 -0.01 1.79 16 47 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -75.36 366.95 3.27 -72.08 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.97 Total: 14.88 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 7.84 Total: 20.13 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -7.50 Total: -130.84 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.36 3.27 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033703327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.775 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds