Wall clock time and date at job start Tue Mar 31 2020 11:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34783 * 120.00030 * 2 1 4 4 O 1.21626 * 119.99968 * 185.01362 * 3 2 1 5 5 C 1.47259 * 119.99848 * 5.02226 * 3 2 1 6 6 C 1.46743 * 126.92626 * 7.72989 * 5 3 2 7 7 C 1.34065 * 106.31407 * 179.89758 * 6 5 3 8 8 N 1.37082 * 109.03700 * 0.41748 * 7 6 5 9 9 C 1.34571 * 109.95319 * 359.68367 * 8 7 6 10 10 C 1.47038 * 123.95203 * 179.62168 * 8 7 6 11 11 C 1.53141 * 108.83377 * 342.44804 * 10 8 7 12 12 C 1.53130 * 109.58792 * 51.23149 * 11 10 8 13 13 C 1.51089 * 126.73246 * 180.19254 * 7 6 5 14 14 C 1.46496 * 120.00310 * 180.02562 * 2 1 3 15 15 H 1.08996 * 110.92270 * 176.09912 * 14 2 1 16 16 C 1.55160 * 111.00181 * 300.00418 * 14 2 1 17 17 C 1.54320 * 102.94395 * 82.57285 * 16 14 2 18 18 N 1.47020 * 107.27038 * 22.18940 * 17 16 14 19 19 C 1.36943 * 125.64691 * 181.02665 * 18 17 16 20 20 H 1.07996 * 119.99835 * 183.44166 * 19 18 17 21 21 C 1.38812 * 119.99910 * 3.44456 * 19 18 17 22 22 N 1.31626 * 119.99705 * 221.79386 * 21 19 18 23 23 Si 1.86794 * 120.00362 * 42.06218 * 21 19 18 24 24 H 1.48502 * 109.47473 * 277.60072 * 23 21 19 25 25 H 1.48506 * 109.47047 * 37.60097 * 23 21 19 26 26 H 1.48500 * 109.47105 * 157.59858 * 23 21 19 27 27 C 1.47418 * 108.70747 * 1.29062 * 18 17 16 28 28 H 1.08999 * 109.47511 * 275.41921 * 1 2 3 29 29 H 1.09001 * 109.47113 * 35.41922 * 1 2 3 30 30 H 1.09001 * 109.46990 * 155.41770 * 1 2 3 31 31 H 1.07998 * 126.84370 * 0.04891 * 6 5 3 32 32 H 1.08003 * 125.72768 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.57771 * 102.25181 * 10 8 7 34 34 H 1.08999 * 109.58070 * 222.50866 * 10 8 7 35 35 H 1.09001 * 109.45602 * 171.26496 * 11 10 8 36 36 H 1.09002 * 109.45297 * 291.21640 * 11 10 8 37 37 H 1.09005 * 109.52914 * 49.72393 * 12 11 10 38 38 H 1.09002 * 109.52895 * 169.86480 * 12 11 10 39 39 H 1.08996 * 109.72095 * 44.88836 * 13 7 6 40 40 H 1.08995 * 109.75383 * 284.25974 * 13 7 6 41 41 H 1.08995 * 110.72033 * 324.20359 * 16 14 2 42 42 H 1.09009 * 110.87005 * 201.00538 * 16 14 2 43 43 H 1.09004 * 109.87822 * 262.77705 * 17 16 14 44 44 H 1.08993 * 109.88726 * 141.60936 * 17 16 14 45 45 H 0.97004 * 120.00008 * 5.33237 * 22 21 19 46 46 H 1.09002 * 110.36596 * 94.47637 * 27 18 17 47 47 H 1.09001 * 110.37293 * 216.80815 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1693 -0.0921 5 6 1.4068 2.4401 0.1116 6 6 -0.0243 2.6129 0.3865 7 6 -0.2482 3.9346 0.4002 8 7 0.9286 4.5902 0.1465 9 6 1.9225 3.6995 -0.0262 10 6 1.0552 6.0535 0.0776 11 6 -0.3377 6.6619 -0.1092 12 6 -1.2892 6.1015 0.9517 13 6 -1.5696 4.6247 0.6462 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0978 -0.0698 16 6 1.8483 -2.1130 1.2535 17 6 0.5311 -2.8069 0.8472 18 7 0.4794 -2.8191 -0.6221 19 6 -0.5404 -3.3292 -1.3805 20 1 -0.4589 -3.3406 -2.4573 21 6 -1.6788 -3.8315 -0.7652 22 7 -2.2262 -4.9456 -1.2030 23 14 -2.4382 -2.9224 0.6791 24 1 -1.7135 -3.2795 1.9252 25 1 -2.3381 -1.4585 0.4505 26 1 -3.8667 -3.3065 0.8099 27 6 1.7099 -2.1972 -1.1437 28 1 -0.3634 0.0971 1.0230 29 1 -0.3633 0.8375 -0.5956 30 1 -0.3633 -0.9345 -0.4275 31 1 -0.7516 1.8311 0.5483 32 1 2.9540 3.9388 -0.2385 33 1 1.4954 6.4259 1.0027 34 1 1.6909 6.3259 -0.7648 35 1 -0.2773 7.7454 -0.0065 36 1 -0.7130 6.4117 -1.1015 37 1 -0.8295 6.1889 1.9362 38 1 -2.2241 6.6618 0.9351 39 1 -2.0734 4.1628 1.4952 40 1 -2.1973 4.5456 -0.2413 41 1 1.6943 -1.4705 2.1203 42 1 2.6262 -2.8497 1.4545 43 1 -0.3184 -2.2505 1.2433 44 1 0.5176 -3.8283 1.2271 45 1 -1.7920 -5.4566 -1.9039 46 1 2.4578 -2.9599 -1.3610 47 1 1.4907 -1.6140 -2.0381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033715136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:43 Heat of formation + Delta-G solvation = 64.931075 kcal Electronic energy + Delta-G solvation = -27585.864225 eV Core-core repulsion = 23964.052879 eV Total energy + Delta-G solvation = -3621.811346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63736 -39.53418 -37.47506 -36.02296 -34.28720 -32.97471 -32.26653 -30.06376 -29.25481 -28.31721 -27.57901 -26.10888 -24.76826 -23.80169 -22.51895 -21.66851 -20.58899 -20.05848 -19.03065 -18.12325 -17.36679 -17.02366 -16.35408 -15.93998 -15.73842 -14.88965 -14.79963 -14.56321 -14.26831 -14.03795 -13.93684 -13.72743 -13.52316 -13.25048 -12.95183 -12.83223 -12.39891 -12.30861 -12.03042 -11.77275 -11.51358 -11.47273 -11.35666 -11.21728 -11.11797 -11.09132 -10.82970 -10.77792 -10.42032 -10.16664 -9.80544 -9.38514 -9.26985 -8.54126 -8.35153 -8.17449 -7.97927 -7.04461 -6.44016 -3.07337 1.89645 2.42089 2.66345 3.47005 3.49958 3.58346 3.70709 3.82908 4.13050 4.25984 4.35271 4.55053 4.66529 4.83484 4.92102 4.93966 5.02657 5.08686 5.18401 5.27765 5.29102 5.36487 5.41225 5.48182 5.50465 5.55670 5.66194 5.70822 5.78984 5.83465 5.95143 5.99207 6.06579 6.07725 6.25475 6.37448 6.44293 6.59731 6.65152 6.77339 6.82117 6.91342 7.01299 7.20332 7.20948 7.76379 7.96253 8.35154 8.68211 9.00762 9.63366 10.31407 11.03401 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.003929 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.081559 B = 7124.961807 C = 8285.562500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.585 5.585 3 C 0.588 3.412 4 O -0.568 6.568 5 C -0.223 4.223 6 C -0.172 4.172 7 C 0.009 3.991 8 N -0.445 5.445 9 C 0.072 3.928 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.124 4.124 13 C -0.052 4.052 14 C 0.122 3.878 15 H 0.104 0.896 16 C -0.141 4.141 17 C 0.124 3.876 18 N -0.602 5.602 19 C -0.354 4.354 20 H 0.078 0.922 21 C 0.002 3.998 22 N -0.888 5.888 23 Si 1.016 2.984 24 H -0.290 1.290 25 H -0.286 1.286 26 H -0.297 1.297 27 C 0.126 3.874 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.268 0.732 46 H 0.038 0.962 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 23.775 4.829 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.315 5.315 3 C 0.379 3.621 4 O -0.450 6.450 5 C -0.234 4.234 6 C -0.195 4.195 7 C -0.099 4.099 8 N -0.122 5.122 9 C -0.063 4.063 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.090 4.090 14 C 0.018 3.982 15 H 0.122 0.878 16 C -0.180 4.180 17 C -0.001 4.001 18 N -0.330 5.330 19 C -0.479 4.479 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.525 5.525 23 Si 0.847 3.153 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.225 1.225 27 C 0.000 4.000 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.003 24.060 5.708 24.909 hybrid contribution 1.221 0.086 -0.949 1.549 sum 4.224 24.146 4.758 24.970 Atomic orbital electron populations 1.22894 0.79059 1.06739 1.00892 1.47429 1.07358 1.04801 1.71911 1.17441 0.86157 0.82876 0.75626 1.90699 1.13868 1.87626 1.52779 1.20313 0.94216 0.92309 1.16512 1.22521 0.95188 0.94580 1.07222 1.20375 0.87982 0.91755 1.09766 1.43913 1.07588 1.06015 1.54710 1.21576 0.93609 0.87718 1.03374 1.22046 0.99210 0.77384 1.03203 1.21843 0.93738 1.00748 1.00805 1.21634 0.99877 0.95847 0.98853 1.20356 0.91891 0.93996 1.02762 1.22288 0.96770 0.82814 0.96363 0.87783 1.22965 0.98775 0.98779 0.97458 1.21591 0.94506 0.98104 0.85892 1.44888 1.17961 1.69999 1.00153 1.19789 0.97581 1.39408 0.91147 0.90375 1.25536 0.96114 0.96312 1.02297 1.70912 1.45561 1.08877 1.27155 0.84587 0.76323 0.77328 0.77013 1.21747 1.21286 1.22479 1.21986 0.89876 0.93256 0.94923 0.93656 0.90788 0.86361 0.82101 0.81168 0.90102 0.89385 0.89705 0.90648 0.91408 0.90629 0.89533 0.90076 0.91323 0.90462 0.95548 0.94484 0.92215 0.94480 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 6.68 59.84 0.40 1.26 16 2 N -0.58 -10.96 2.91 -172.67 -0.50 -11.47 16 3 C 0.59 11.00 7.66 -12.59 -0.10 10.90 16 4 O -0.57 -11.81 16.31 5.25 0.09 -11.73 16 5 C -0.22 -3.57 6.05 -103.32 -0.63 -4.19 16 6 C -0.17 -2.44 8.75 -37.62 -0.33 -2.77 16 7 C 0.01 0.10 6.53 -81.52 -0.53 -0.43 16 8 N -0.44 -4.85 3.11 -111.86 -0.35 -5.20 16 9 C 0.07 0.95 11.19 -16.88 -0.19 0.77 16 10 C 0.10 0.69 6.89 -3.68 -0.03 0.67 16 11 C -0.13 -0.73 5.91 -26.59 -0.16 -0.89 16 12 C -0.12 -0.76 5.96 -26.46 -0.16 -0.92 16 13 C -0.05 -0.44 6.26 -27.49 -0.17 -0.61 16 14 C 0.12 2.31 3.67 -65.66 -0.24 2.06 16 15 H 0.10 1.93 7.02 -51.93 -0.36 1.56 16 16 C -0.14 -2.55 6.48 -24.90 -0.16 -2.72 16 17 C 0.12 2.72 4.06 -3.07 -0.01 2.71 16 18 N -0.60 -14.51 1.80 -169.94 -0.31 -14.81 16 19 C -0.35 -9.82 9.80 -15.06 -0.15 -9.97 16 20 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 21 C 0.00 0.04 5.28 -17.43 -0.09 -0.05 16 22 N -0.89 -27.00 13.70 55.49 0.76 -26.24 16 23 Si 1.02 24.99 24.78 -169.99 -4.21 20.77 16 24 H -0.29 -6.84 6.42 56.52 0.36 -6.48 16 25 H -0.29 -6.42 6.35 56.52 0.36 -6.06 16 26 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 27 C 0.13 2.65 6.47 -2.41 -0.02 2.64 16 28 H 0.04 0.79 7.40 -51.93 -0.38 0.40 16 29 H 0.07 1.26 5.19 -51.93 -0.27 0.99 16 30 H 0.12 2.57 3.14 -51.93 -0.16 2.41 16 31 H 0.16 2.27 4.81 -52.49 -0.25 2.02 16 32 H 0.17 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 43 H 0.03 0.60 3.39 -51.93 -0.18 0.43 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -33.22 351.71 -8.96 -42.18 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.18 Total: 2.72 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.55 Total: -1.53 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.40 Total: -57.72 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.21 Total: 20.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.22 -8.96 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033715136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.115 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds