Wall clock time and date at job start Tue Mar 31 2020 11:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34783 * 120.00030 * 2 1 4 4 O 1.21626 * 119.99968 * 185.01362 * 3 2 1 5 5 C 1.47259 * 119.99848 * 5.02226 * 3 2 1 6 6 C 1.46743 * 126.92626 * 7.72989 * 5 3 2 7 7 C 1.34065 * 106.31407 * 179.89758 * 6 5 3 8 8 N 1.37082 * 109.03700 * 0.41748 * 7 6 5 9 9 C 1.34571 * 109.95319 * 359.68367 * 8 7 6 10 10 C 1.47038 * 123.95203 * 179.62168 * 8 7 6 11 11 C 1.53141 * 108.83377 * 342.44804 * 10 8 7 12 12 C 1.53130 * 109.58792 * 51.23149 * 11 10 8 13 13 C 1.51089 * 126.73246 * 180.19254 * 7 6 5 14 14 C 1.46496 * 120.00310 * 180.02562 * 2 1 3 15 15 H 1.08996 * 110.92270 * 176.09912 * 14 2 1 16 16 C 1.55160 * 111.00181 * 300.00418 * 14 2 1 17 17 C 1.54320 * 102.94395 * 82.57285 * 16 14 2 18 18 N 1.47020 * 107.27038 * 22.18940 * 17 16 14 19 19 C 1.36943 * 125.64691 * 181.02665 * 18 17 16 20 20 H 1.07996 * 119.99835 * 183.44166 * 19 18 17 21 21 C 1.38812 * 119.99910 * 3.44456 * 19 18 17 22 22 N 1.31626 * 119.99705 * 221.79386 * 21 19 18 23 23 Si 1.86794 * 120.00362 * 42.06218 * 21 19 18 24 24 H 1.48502 * 109.47473 * 277.60072 * 23 21 19 25 25 H 1.48506 * 109.47047 * 37.60097 * 23 21 19 26 26 H 1.48500 * 109.47105 * 157.59858 * 23 21 19 27 27 C 1.47418 * 108.70747 * 1.29062 * 18 17 16 28 28 H 1.08999 * 109.47511 * 275.41921 * 1 2 3 29 29 H 1.09001 * 109.47113 * 35.41922 * 1 2 3 30 30 H 1.09001 * 109.46990 * 155.41770 * 1 2 3 31 31 H 1.07998 * 126.84370 * 0.04891 * 6 5 3 32 32 H 1.08003 * 125.72768 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.57771 * 102.25181 * 10 8 7 34 34 H 1.08999 * 109.58070 * 222.50866 * 10 8 7 35 35 H 1.09001 * 109.45602 * 171.26496 * 11 10 8 36 36 H 1.09002 * 109.45297 * 291.21640 * 11 10 8 37 37 H 1.09005 * 109.52914 * 49.72393 * 12 11 10 38 38 H 1.09002 * 109.52895 * 169.86480 * 12 11 10 39 39 H 1.08996 * 109.72095 * 44.88836 * 13 7 6 40 40 H 1.08995 * 109.75383 * 284.25974 * 13 7 6 41 41 H 1.08995 * 110.72033 * 324.20359 * 16 14 2 42 42 H 1.09009 * 110.87005 * 201.00538 * 16 14 2 43 43 H 1.09004 * 109.87822 * 262.77705 * 17 16 14 44 44 H 1.08993 * 109.88726 * 141.60936 * 17 16 14 45 45 H 0.97004 * 120.00008 * 5.33237 * 22 21 19 46 46 H 1.09002 * 110.36596 * 94.47637 * 27 18 17 47 47 H 1.09001 * 110.37293 * 216.80815 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1693 -0.0921 5 6 1.4068 2.4401 0.1116 6 6 -0.0243 2.6129 0.3865 7 6 -0.2482 3.9346 0.4002 8 7 0.9286 4.5902 0.1465 9 6 1.9225 3.6995 -0.0262 10 6 1.0552 6.0535 0.0776 11 6 -0.3377 6.6619 -0.1092 12 6 -1.2892 6.1015 0.9517 13 6 -1.5696 4.6247 0.6462 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0978 -0.0698 16 6 1.8483 -2.1130 1.2535 17 6 0.5311 -2.8069 0.8472 18 7 0.4794 -2.8191 -0.6221 19 6 -0.5404 -3.3292 -1.3805 20 1 -0.4589 -3.3406 -2.4573 21 6 -1.6788 -3.8315 -0.7652 22 7 -2.2262 -4.9456 -1.2030 23 14 -2.4382 -2.9224 0.6791 24 1 -1.7135 -3.2795 1.9252 25 1 -2.3381 -1.4585 0.4505 26 1 -3.8667 -3.3065 0.8099 27 6 1.7099 -2.1972 -1.1437 28 1 -0.3634 0.0971 1.0230 29 1 -0.3633 0.8375 -0.5956 30 1 -0.3633 -0.9345 -0.4275 31 1 -0.7516 1.8311 0.5483 32 1 2.9540 3.9388 -0.2385 33 1 1.4954 6.4259 1.0027 34 1 1.6909 6.3259 -0.7648 35 1 -0.2773 7.7454 -0.0065 36 1 -0.7130 6.4117 -1.1015 37 1 -0.8295 6.1889 1.9362 38 1 -2.2241 6.6618 0.9351 39 1 -2.0734 4.1628 1.4952 40 1 -2.1973 4.5456 -0.2413 41 1 1.6943 -1.4705 2.1203 42 1 2.6262 -2.8497 1.4545 43 1 -0.3184 -2.2505 1.2433 44 1 0.5176 -3.8283 1.2271 45 1 -1.7920 -5.4566 -1.9039 46 1 2.4578 -2.9599 -1.3610 47 1 1.4907 -1.6140 -2.0381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033715136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:42 Heat of formation + Delta-G solvation = 45.116386 kcal Electronic energy + Delta-G solvation = -27586.723455 eV Core-core repulsion = 23964.052879 eV Total energy + Delta-G solvation = -3622.670576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.56332 -40.99245 -39.04907 -36.70437 -35.89621 -34.44215 -33.57244 -31.64034 -30.49951 -29.80406 -28.52040 -27.53407 -25.99156 -25.19580 -23.71436 -22.42251 -22.36186 -21.40791 -20.23256 -19.44548 -19.12942 -18.05603 -17.71043 -17.20770 -16.73159 -16.42332 -16.13252 -15.92562 -15.34062 -15.15810 -15.09699 -14.77715 -14.67549 -14.55950 -14.39852 -14.13299 -13.64787 -13.54847 -13.28875 -13.18860 -13.04718 -12.78504 -12.64493 -12.50712 -12.37311 -11.97302 -11.93589 -11.91525 -11.77762 -11.73364 -11.70591 -11.23601 -10.80785 -10.35693 -9.76034 -9.51560 -9.11999 -8.97645 -8.70639 -5.26108 0.76013 1.44322 1.47942 1.55030 1.75589 1.82302 2.19961 2.53440 2.60794 2.87898 3.42571 3.61232 3.67087 3.76022 3.81195 3.82873 3.88515 4.11802 4.14474 4.18977 4.37036 4.39425 4.40425 4.46606 4.51595 4.57480 4.61628 4.63899 4.79874 4.85486 4.89886 4.90843 4.92287 4.93430 4.96115 5.07006 5.10946 5.14260 5.21190 5.26462 5.33008 5.64119 5.68483 5.80545 6.11011 6.12059 6.35418 6.54018 6.83041 7.26666 7.53433 8.20986 8.78457 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.003929 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.081559 B = 7124.961807 C = 8285.562500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.590 5.590 3 C 0.585 3.415 4 O -0.597 6.597 5 C -0.262 4.262 6 C -0.197 4.197 7 C 0.018 3.982 8 N -0.437 5.437 9 C 0.078 3.922 10 C 0.092 3.908 11 C -0.130 4.130 12 C -0.122 4.122 13 C -0.056 4.056 14 C 0.130 3.870 15 H 0.111 0.889 16 C -0.126 4.126 17 C 0.120 3.880 18 N -0.613 5.613 19 C -0.344 4.344 20 H 0.046 0.954 21 C -0.049 4.049 22 N -0.925 5.925 23 Si 1.061 2.939 24 H -0.272 1.272 25 H -0.255 1.255 26 H -0.307 1.307 27 C 0.127 3.873 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.183 0.817 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.254 0.746 46 H 0.044 0.956 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 27.569 6.666 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.319 5.319 3 C 0.379 3.621 4 O -0.481 6.481 5 C -0.272 4.272 6 C -0.220 4.220 7 C -0.090 4.090 8 N -0.113 5.113 9 C -0.059 4.059 10 C -0.027 4.027 11 C -0.168 4.168 12 C -0.159 4.159 13 C -0.093 4.093 14 C 0.026 3.974 15 H 0.129 0.871 16 C -0.165 4.165 17 C -0.004 4.004 18 N -0.341 5.341 19 C -0.471 4.471 20 H 0.064 0.936 21 C -0.247 4.247 22 N -0.565 5.565 23 Si 0.887 3.113 24 H -0.199 1.199 25 H -0.180 1.180 26 H -0.235 1.235 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.174 0.826 32 H 0.200 0.800 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.183 27.908 7.552 29.086 hybrid contribution 1.225 -1.012 -1.630 2.276 sum 4.408 26.896 5.922 27.890 Atomic orbital electron populations 1.22781 0.78955 1.05373 1.01558 1.47481 1.07430 1.04871 1.72147 1.17852 0.85979 0.83584 0.74733 1.90664 1.15042 1.88059 1.54330 1.20269 0.95277 0.91984 1.19702 1.22496 0.94435 0.95867 1.09243 1.20829 0.89406 0.91333 1.07468 1.44245 1.06694 1.07623 1.52727 1.21760 0.94545 0.87446 1.02118 1.22471 1.00774 0.74632 1.04841 1.21878 0.92478 1.02252 1.00170 1.21647 1.01054 0.94242 0.98972 1.20518 0.90053 0.95466 1.03288 1.22168 0.97018 0.82719 0.95544 0.87116 1.22926 0.97199 0.98948 0.97438 1.21682 0.96744 0.97704 0.84272 1.44849 1.17798 1.70201 1.01264 1.19604 0.98826 1.38512 0.90153 0.93645 1.26667 0.96779 0.96221 1.05044 1.71031 1.46504 1.10517 1.28464 0.84031 0.74819 0.77685 0.74784 1.19863 1.18041 1.23518 1.22044 0.88837 0.93663 0.95408 0.92439 0.89707 0.89435 0.82587 0.79956 0.88440 0.87787 0.86935 0.91277 0.91414 0.88731 0.89015 0.89483 0.89534 0.88268 0.95467 0.95934 0.93693 0.93834 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 6.68 127.77 0.85 2.87 16 2 N -0.59 -21.64 2.91 -818.46 -2.38 -24.03 16 3 C 0.59 21.56 7.66 86.61 0.66 22.23 16 4 O -0.60 -24.57 16.31 -4.11 -0.07 -24.64 16 5 C -0.26 -8.12 6.05 -19.02 -0.12 -8.24 16 6 C -0.20 -5.37 8.75 23.54 0.21 -5.16 16 7 C 0.02 0.39 6.53 40.91 0.27 0.66 16 8 N -0.44 -8.38 3.11 -507.82 -1.58 -9.96 16 9 C 0.08 1.94 11.19 83.93 0.94 2.88 16 10 C 0.09 0.90 6.89 86.32 0.59 1.50 16 11 C -0.13 -0.89 5.91 30.68 0.18 -0.71 16 12 C -0.12 -1.01 5.96 30.77 0.18 -0.83 16 13 C -0.06 -0.77 6.26 30.10 0.19 -0.58 16 14 C 0.13 4.78 3.67 46.46 0.17 4.95 16 15 H 0.11 3.98 7.02 -2.39 -0.02 3.96 16 16 C -0.13 -4.32 6.48 31.78 0.21 -4.11 16 17 C 0.12 5.15 4.06 86.73 0.35 5.51 16 18 N -0.61 -29.77 1.80 -691.56 -1.25 -31.01 16 19 C -0.34 -19.67 9.80 84.03 0.82 -18.85 16 20 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 21 C -0.05 -2.83 5.28 84.86 0.45 -2.39 16 22 N -0.93 -58.20 13.70 21.65 0.30 -57.90 16 23 Si 1.06 50.66 24.78 68.60 1.70 52.36 16 24 H -0.27 -12.15 6.42 99.48 0.64 -11.51 16 25 H -0.26 -10.81 6.35 99.48 0.63 -10.18 16 26 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 27 C 0.13 5.34 6.47 86.94 0.56 5.90 16 28 H 0.06 1.90 7.40 -2.39 -0.02 1.88 16 29 H 0.08 2.84 5.19 -2.39 -0.01 2.83 16 30 H 0.09 3.75 3.14 -2.39 -0.01 3.74 16 31 H 0.16 4.24 4.81 -2.91 -0.01 4.23 16 32 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 37 H 0.07 0.60 8.12 -2.38 -0.02 0.58 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 43 H 0.03 1.19 3.39 -2.39 -0.01 1.18 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.45 351.71 4.04 -70.42 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.79 Total: 19.13 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 6.52 Total: 5.63 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -4.91 Total: -122.90 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.64 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.70 Total: 52.36 kcal Total: -74.45 4.04 -70.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033715136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.531 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds