Wall clock time and date at job start Tue Mar 31 2020 11:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34772 * 120.00327 * 2 1 4 4 O 1.21625 * 120.00241 * 181.90571 * 3 2 1 5 5 C 1.47263 * 119.99821 * 1.91347 * 3 2 1 6 6 C 1.46741 * 126.92616 * 165.32803 * 5 3 2 7 7 C 1.34064 * 106.31399 * 179.97438 * 6 5 3 8 8 N 1.37081 * 109.04424 * 0.02562 * 7 6 5 9 9 C 1.34579 * 109.94534 * 359.96502 * 8 7 6 10 10 C 1.47025 * 123.95900 * 179.91737 * 8 7 6 11 11 C 1.53145 * 108.84211 * 342.47765 * 10 8 7 12 12 C 1.53211 * 109.56806 * 51.20753 * 11 10 8 13 13 C 1.51094 * 126.72737 * 180.08467 * 7 6 5 14 14 C 1.46510 * 119.99738 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.63353 * 178.30939 * 14 2 1 16 16 C 1.55151 * 110.71816 * 54.97369 * 14 2 1 17 17 C 1.54903 * 101.58431 * 277.13605 * 16 14 2 18 18 N 1.47425 * 104.83329 * 322.99509 * 17 16 14 19 19 C 1.36937 * 125.65166 * 204.09049 * 18 17 16 20 20 H 1.07997 * 120.00536 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99802 * 0.04187 * 19 18 17 22 22 N 1.31621 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99986 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46790 * 90.00005 * 23 21 19 25 25 H 1.48500 * 109.46779 * 209.99807 * 23 21 19 26 26 H 1.48498 * 109.46762 * 330.00086 * 23 21 19 27 27 C 1.47022 * 108.70138 * 24.12543 * 18 17 16 28 28 H 1.09000 * 109.47511 * 84.51161 * 1 2 3 29 29 H 1.08998 * 109.47638 * 204.51094 * 1 2 3 30 30 H 1.08996 * 109.47117 * 324.50504 * 1 2 3 31 31 H 1.08001 * 126.84265 * 359.97134 * 6 5 3 32 32 H 1.08000 * 125.72788 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.57603 * 102.27994 * 10 8 7 34 34 H 1.09000 * 109.58309 * 222.66918 * 10 8 7 35 35 H 1.09003 * 109.44926 * 171.21620 * 11 10 8 36 36 H 1.08996 * 109.44826 * 291.12951 * 11 10 8 37 37 H 1.08999 * 109.51297 * 169.91413 * 12 11 10 38 38 H 1.08997 * 109.62508 * 49.72959 * 12 11 10 39 39 H 1.08998 * 109.71791 * 283.81588 * 13 7 6 40 40 H 1.08999 * 109.72083 * 44.47249 * 13 7 6 41 41 H 1.08999 * 111.01052 * 35.21283 * 16 14 2 42 42 H 1.09009 * 111.00023 * 159.06375 * 16 14 2 43 43 H 1.09000 * 110.37217 * 204.15471 * 17 16 14 44 44 H 1.09007 * 110.45872 * 81.87756 * 17 16 14 45 45 H 0.96998 * 119.99488 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.88314 * 239.52372 * 27 18 17 47 47 H 1.09000 * 109.88014 * 118.35634 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3546 1.1674 -0.0350 5 6 1.4032 2.4421 0.0426 6 6 1.9539 3.7680 0.3461 7 6 0.9284 4.6281 0.2700 8 7 -0.2107 3.9385 -0.0557 9 6 0.0689 2.6292 -0.1932 10 6 -1.5305 4.5645 -0.2223 11 6 -1.5086 5.9472 0.4357 12 6 -0.2999 6.7389 -0.0737 13 6 0.9823 6.1208 0.4980 14 6 2.1974 -1.2688 -0.0006 15 1 3.2725 -1.0917 -0.0306 16 6 1.7505 -2.1601 -1.1893 17 6 0.4718 -2.8220 -0.6183 18 7 0.7744 -3.0625 0.8044 19 6 0.1810 -4.0077 1.5980 20 1 0.4736 -4.1048 2.6330 21 6 -0.7965 -4.8412 1.0719 22 7 -1.1532 -4.7227 -0.1895 23 14 -1.6054 -6.1311 2.1542 24 1 -2.8052 -5.5480 2.8065 25 1 -2.0097 -7.2926 1.3219 26 1 -0.6443 -6.5779 3.1943 27 6 1.8181 -2.1187 1.2304 28 1 -0.3634 0.0983 -1.0229 29 1 -0.3634 -0.9350 0.4263 30 1 -0.3633 0.8367 0.5967 31 1 2.9807 4.0039 0.5835 32 1 -0.6411 1.8561 -0.4471 33 1 -1.7537 4.6690 -1.2841 34 1 -2.2911 3.9456 0.2536 35 1 -2.4246 6.4827 0.1857 36 1 -1.4392 5.8333 1.5175 37 1 -0.3807 7.7761 0.2515 38 1 -0.2691 6.6998 -1.1625 39 1 1.0456 6.3275 1.5663 40 1 1.8508 6.5395 -0.0104 41 1 1.5191 -1.5551 -2.0660 42 1 2.5075 -2.9091 -1.4222 43 1 0.2723 -3.7645 -1.1282 44 1 -0.3812 -2.1505 -0.7164 45 1 -1.8365 -5.3049 -0.5570 46 1 2.6908 -2.6668 1.5856 47 1 1.4349 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033715137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:47 Heat of formation + Delta-G solvation = 63.266189 kcal Electronic energy + Delta-G solvation = -27172.416237 eV Core-core repulsion = 23550.532696 eV Total energy + Delta-G solvation = -3621.883541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64895 -39.45220 -37.21823 -36.05188 -34.30219 -32.88736 -32.15574 -29.91412 -28.93767 -28.14066 -27.38307 -26.18320 -24.83114 -24.22513 -22.25678 -21.82791 -20.19627 -19.77665 -18.95192 -18.61814 -16.99619 -16.82166 -16.36119 -15.74976 -15.49224 -14.90677 -14.65631 -14.53615 -14.26219 -14.04366 -13.83078 -13.74977 -13.51797 -12.96558 -12.76075 -12.48027 -12.22130 -12.19420 -11.83796 -11.75760 -11.53117 -11.47868 -11.40216 -11.21203 -11.14194 -11.01569 -10.86815 -10.72379 -10.16539 -10.08756 -9.83085 -9.51059 -9.29282 -8.63561 -8.55928 -8.12797 -8.06643 -6.83288 -5.65837 -3.07320 1.91510 2.43888 2.71005 3.39017 3.44839 3.46641 3.49671 3.84945 4.14417 4.27795 4.35038 4.49159 4.56038 4.86963 4.92057 4.99060 5.09497 5.17369 5.29056 5.36552 5.44859 5.46135 5.47203 5.50263 5.58677 5.59082 5.65310 5.77601 5.78825 5.88080 5.97718 6.04974 6.12433 6.29594 6.38221 6.44911 6.64158 6.69752 6.80198 6.82319 7.05898 7.18571 7.24404 7.48574 7.63394 7.85112 7.95315 8.35759 8.71836 9.21871 9.82356 10.47534 11.37605 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.003080 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.147899 B = 9088.317814 C = 9924.614351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.591 5.591 3 C 0.586 3.414 4 O -0.558 6.558 5 C -0.220 4.220 6 C -0.138 4.138 7 C 0.005 3.995 8 N -0.444 5.444 9 C 0.033 3.967 10 C 0.101 3.899 11 C -0.134 4.134 12 C -0.125 4.125 13 C -0.050 4.050 14 C 0.128 3.872 15 H 0.100 0.900 16 C -0.154 4.154 17 C 0.144 3.856 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.188 0.812 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.021 0.979 45 H 0.251 0.749 46 H 0.033 0.967 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 22.634 -1.704 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.322 5.322 3 C 0.376 3.624 4 O -0.438 6.438 5 C -0.230 4.230 6 C -0.162 4.162 7 C -0.103 4.103 8 N -0.121 5.121 9 C -0.100 4.100 10 C -0.020 4.020 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.088 4.088 14 C 0.024 3.976 15 H 0.118 0.882 16 C -0.194 4.194 17 C 0.020 3.980 18 N -0.330 5.330 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.001 4.001 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.205 0.795 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.921 22.606 -1.765 22.756 hybrid contribution -0.655 -0.785 0.529 1.151 sum -2.576 21.821 -1.236 22.007 Atomic orbital electron populations 1.22618 0.80190 1.05305 1.00846 1.47583 1.06843 1.05376 1.72394 1.17463 0.86565 0.82566 0.75790 1.90705 1.13603 1.87408 1.52048 1.20410 0.93012 0.93873 1.15724 1.21487 0.98159 0.90123 1.06457 1.20274 0.85891 0.94362 1.09726 1.43982 1.07906 1.06563 1.53647 1.22958 0.97245 0.85269 1.04551 1.22068 0.82860 0.95017 1.02075 1.21855 0.99712 0.94171 1.01396 1.21646 0.93977 0.99451 1.01147 1.20326 0.98587 0.88116 1.01733 1.22106 0.96570 0.82117 0.96806 0.88220 1.23343 1.01439 0.98262 0.96355 1.22125 0.90571 1.00592 0.84703 1.44556 1.42729 1.37679 1.08008 1.19084 1.14672 1.08241 0.92808 0.90540 1.24767 0.99488 0.99907 0.96499 1.69805 1.34069 1.41203 1.12056 0.86082 0.79264 0.81062 0.79158 1.21730 1.21713 1.20742 1.21660 0.92681 0.91399 0.94314 0.93004 0.87523 0.91120 0.83784 0.79529 0.89989 0.89170 0.89672 0.90671 0.90723 0.91354 0.90284 0.89718 0.92087 0.91095 0.87726 0.96108 0.93805 0.94960 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.85 7.02 59.84 0.42 1.27 16 2 N -0.59 -10.79 2.82 -173.17 -0.49 -11.28 16 3 C 0.59 11.06 7.67 -12.59 -0.10 10.96 16 4 O -0.56 -12.19 16.37 5.26 0.09 -12.10 16 5 C -0.22 -3.50 6.07 -103.32 -0.63 -4.12 16 6 C -0.14 -1.97 10.92 -37.62 -0.41 -2.38 16 7 C 0.01 0.06 6.53 -81.52 -0.53 -0.47 16 8 N -0.44 -4.80 3.11 -111.87 -0.35 -5.15 16 9 C 0.03 0.43 9.25 -16.87 -0.16 0.27 16 10 C 0.10 0.70 6.89 -3.68 -0.03 0.67 16 11 C -0.13 -0.72 5.92 -26.55 -0.16 -0.88 16 12 C -0.12 -0.71 5.97 -26.42 -0.16 -0.87 16 13 C -0.05 -0.38 6.26 -27.49 -0.17 -0.55 16 14 C 0.13 2.52 3.58 -66.10 -0.24 2.28 16 15 H 0.10 2.00 6.99 -51.93 -0.36 1.64 16 16 C -0.15 -3.06 6.53 -24.59 -0.16 -3.22 16 17 C 0.14 3.39 4.99 -2.53 -0.01 3.38 16 18 N -0.60 -15.13 2.97 -170.07 -0.51 -15.64 16 19 C -0.22 -6.02 10.27 -15.06 -0.15 -6.18 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -26.14 10.09 55.49 0.56 -25.58 16 23 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.13 2.76 6.29 -3.07 -0.02 2.74 16 28 H 0.05 0.75 7.61 -51.93 -0.39 0.35 16 29 H 0.11 2.08 4.79 -51.93 -0.25 1.83 16 30 H 0.07 0.99 4.92 -51.93 -0.26 0.73 16 31 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 32 H 0.19 2.09 4.65 -52.49 -0.24 1.85 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 43 H 0.11 2.81 5.87 -51.93 -0.31 2.50 16 44 H 0.02 0.50 5.55 -51.93 -0.29 0.21 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.60 8.04 -51.93 -0.42 0.19 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -33.03 357.99 -10.05 -43.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.13 Total: 2.00 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.59 Total: 2.49 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.78 Total: -57.65 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.03 -10.05 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033715137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.354 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds