Wall clock time and date at job start Tue Mar 31 2020 11:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34772 * 120.00327 * 2 1 4 4 O 1.21625 * 120.00241 * 181.90571 * 3 2 1 5 5 C 1.47263 * 119.99821 * 1.91347 * 3 2 1 6 6 C 1.46741 * 126.92616 * 165.32803 * 5 3 2 7 7 C 1.34064 * 106.31399 * 179.97438 * 6 5 3 8 8 N 1.37081 * 109.04424 * 0.02562 * 7 6 5 9 9 C 1.34579 * 109.94534 * 359.96502 * 8 7 6 10 10 C 1.47025 * 123.95900 * 179.91737 * 8 7 6 11 11 C 1.53145 * 108.84211 * 342.47765 * 10 8 7 12 12 C 1.53211 * 109.56806 * 51.20753 * 11 10 8 13 13 C 1.51094 * 126.72737 * 180.08467 * 7 6 5 14 14 C 1.46510 * 119.99738 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.63353 * 178.30939 * 14 2 1 16 16 C 1.55151 * 110.71816 * 54.97369 * 14 2 1 17 17 C 1.54903 * 101.58431 * 277.13605 * 16 14 2 18 18 N 1.47425 * 104.83329 * 322.99509 * 17 16 14 19 19 C 1.36937 * 125.65166 * 204.09049 * 18 17 16 20 20 H 1.07997 * 120.00536 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99802 * 0.04187 * 19 18 17 22 22 N 1.31621 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99986 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46790 * 90.00005 * 23 21 19 25 25 H 1.48500 * 109.46779 * 209.99807 * 23 21 19 26 26 H 1.48498 * 109.46762 * 330.00086 * 23 21 19 27 27 C 1.47022 * 108.70138 * 24.12543 * 18 17 16 28 28 H 1.09000 * 109.47511 * 84.51161 * 1 2 3 29 29 H 1.08998 * 109.47638 * 204.51094 * 1 2 3 30 30 H 1.08996 * 109.47117 * 324.50504 * 1 2 3 31 31 H 1.08001 * 126.84265 * 359.97134 * 6 5 3 32 32 H 1.08000 * 125.72788 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.57603 * 102.27994 * 10 8 7 34 34 H 1.09000 * 109.58309 * 222.66918 * 10 8 7 35 35 H 1.09003 * 109.44926 * 171.21620 * 11 10 8 36 36 H 1.08996 * 109.44826 * 291.12951 * 11 10 8 37 37 H 1.08999 * 109.51297 * 169.91413 * 12 11 10 38 38 H 1.08997 * 109.62508 * 49.72959 * 12 11 10 39 39 H 1.08998 * 109.71791 * 283.81588 * 13 7 6 40 40 H 1.08999 * 109.72083 * 44.47249 * 13 7 6 41 41 H 1.08999 * 111.01052 * 35.21283 * 16 14 2 42 42 H 1.09009 * 111.00023 * 159.06375 * 16 14 2 43 43 H 1.09000 * 110.37217 * 204.15471 * 17 16 14 44 44 H 1.09007 * 110.45872 * 81.87756 * 17 16 14 45 45 H 0.96998 * 119.99488 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.88314 * 239.52372 * 27 18 17 47 47 H 1.09000 * 109.88014 * 118.35634 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3546 1.1674 -0.0350 5 6 1.4032 2.4421 0.0426 6 6 1.9539 3.7680 0.3461 7 6 0.9284 4.6281 0.2700 8 7 -0.2107 3.9385 -0.0557 9 6 0.0689 2.6292 -0.1932 10 6 -1.5305 4.5645 -0.2223 11 6 -1.5086 5.9472 0.4357 12 6 -0.2999 6.7389 -0.0737 13 6 0.9823 6.1208 0.4980 14 6 2.1974 -1.2688 -0.0006 15 1 3.2725 -1.0917 -0.0306 16 6 1.7505 -2.1601 -1.1893 17 6 0.4718 -2.8220 -0.6183 18 7 0.7744 -3.0625 0.8044 19 6 0.1810 -4.0077 1.5980 20 1 0.4736 -4.1048 2.6330 21 6 -0.7965 -4.8412 1.0719 22 7 -1.1532 -4.7227 -0.1895 23 14 -1.6054 -6.1311 2.1542 24 1 -2.8052 -5.5480 2.8065 25 1 -2.0097 -7.2926 1.3219 26 1 -0.6443 -6.5779 3.1943 27 6 1.8181 -2.1187 1.2304 28 1 -0.3634 0.0983 -1.0229 29 1 -0.3634 -0.9350 0.4263 30 1 -0.3633 0.8367 0.5967 31 1 2.9807 4.0039 0.5835 32 1 -0.6411 1.8561 -0.4471 33 1 -1.7537 4.6690 -1.2841 34 1 -2.2911 3.9456 0.2536 35 1 -2.4246 6.4827 0.1857 36 1 -1.4392 5.8333 1.5175 37 1 -0.3807 7.7761 0.2515 38 1 -0.2691 6.6998 -1.1625 39 1 1.0456 6.3275 1.5663 40 1 1.8508 6.5395 -0.0104 41 1 1.5191 -1.5551 -2.0660 42 1 2.5075 -2.9091 -1.4222 43 1 0.2723 -3.7645 -1.1282 44 1 -0.3812 -2.1505 -0.7164 45 1 -1.8365 -5.3049 -0.5570 46 1 2.6908 -2.6668 1.5856 47 1 1.4349 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033715137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:46 Heat of formation + Delta-G solvation = 44.600764 kcal Electronic energy + Delta-G solvation = -27173.225631 eV Core-core repulsion = 23550.532696 eV Total energy + Delta-G solvation = -3622.692935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59289 -40.92590 -38.86776 -36.76362 -35.93009 -34.01443 -33.63351 -31.41969 -30.41706 -29.48933 -28.41207 -27.66321 -26.38131 -25.32620 -23.47607 -22.50791 -22.03342 -21.21928 -20.03477 -19.72687 -18.92509 -17.90849 -17.61354 -16.95622 -16.66840 -16.56852 -16.10985 -15.61080 -15.51701 -15.07586 -14.83944 -14.66480 -14.50509 -14.31949 -14.13561 -13.85799 -13.59699 -13.54314 -13.33949 -13.32027 -12.95788 -12.80402 -12.70290 -12.48395 -12.30876 -12.01886 -11.93130 -11.87126 -11.78098 -11.70313 -11.67642 -11.40144 -10.84796 -10.64127 -9.72936 -9.42853 -9.10391 -8.86085 -7.74589 -5.18573 0.77074 1.43878 1.49217 1.50323 1.59081 1.84808 2.12763 2.50736 2.53087 3.35412 3.61204 3.64189 3.73127 3.82230 3.85293 3.91701 3.99444 4.06760 4.15015 4.23834 4.34020 4.42227 4.50548 4.51563 4.57280 4.60227 4.64970 4.71405 4.86131 4.88858 4.91109 4.91944 4.95705 5.03578 5.07504 5.11390 5.13624 5.20731 5.34374 5.48104 5.59713 5.68252 5.81453 5.84554 6.10228 6.33251 6.35950 6.52577 7.13722 7.27405 7.78646 8.43458 9.26538 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.003080 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.147899 B = 9088.317814 C = 9924.614351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.592 5.592 3 C 0.582 3.418 4 O -0.599 6.599 5 C -0.259 4.259 6 C -0.174 4.174 7 C 0.021 3.979 8 N -0.437 5.437 9 C 0.046 3.954 10 C 0.089 3.911 11 C -0.131 4.131 12 C -0.122 4.122 13 C -0.052 4.052 14 C 0.137 3.863 15 H 0.096 0.904 16 C -0.139 4.139 17 C 0.152 3.848 18 N -0.617 5.617 19 C -0.238 4.238 20 H 0.075 0.925 21 C -0.059 4.059 22 N -0.943 5.943 23 Si 0.977 3.023 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.130 3.870 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.204 0.796 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.020 0.980 45 H 0.248 0.752 46 H 0.031 0.969 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 24.889 -1.701 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.322 5.322 3 C 0.375 3.625 4 O -0.482 6.482 5 C -0.269 4.269 6 C -0.198 4.198 7 C -0.088 4.088 8 N -0.113 5.113 9 C -0.089 4.089 10 C -0.030 4.030 11 C -0.168 4.168 12 C -0.159 4.159 13 C -0.090 4.090 14 C 0.033 3.967 15 H 0.114 0.886 16 C -0.178 4.178 17 C 0.028 3.972 18 N -0.344 5.344 19 C -0.367 4.367 20 H 0.093 0.907 21 C -0.252 4.252 22 N -0.592 5.592 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.201 1.201 27 C 0.003 3.997 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.221 0.779 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.863 24.895 -1.757 25.254 hybrid contribution -0.088 -1.395 0.542 1.499 sum -3.951 23.500 -1.216 23.861 Atomic orbital electron populations 1.22637 0.78810 1.04469 1.02309 1.47606 1.07614 1.04709 1.72294 1.17935 0.86286 0.83463 0.74792 1.90664 1.15396 1.87998 1.54137 1.20303 0.94517 0.92995 1.19117 1.21580 0.98868 0.90449 1.08912 1.20747 0.85206 0.95868 1.07003 1.44324 1.09311 1.05913 1.51748 1.23035 0.96181 0.86637 1.03086 1.22504 0.80879 0.95977 1.03623 1.21896 1.00761 0.93283 1.00887 1.21661 0.92775 1.00496 1.00971 1.20504 1.00320 0.85489 1.02673 1.21866 0.96609 0.82651 0.95587 0.88554 1.23197 0.99635 0.98213 0.96789 1.21924 0.92208 0.99160 0.83914 1.44732 1.43193 1.37860 1.08608 1.19367 1.15104 1.08997 0.93210 0.90701 1.25519 1.00146 1.01749 0.97795 1.70026 1.34242 1.41729 1.13249 0.85094 0.78304 0.78402 0.77583 1.21216 1.21986 1.20067 1.21673 0.91753 0.91084 0.95167 0.90935 0.90711 0.88804 0.84743 0.77928 0.88359 0.87669 0.87012 0.91157 0.88606 0.91467 0.89324 0.89051 0.90252 0.90839 0.91019 0.96237 0.94253 0.95140 0.96006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.87 7.02 127.77 0.90 2.77 16 2 N -0.59 -21.65 2.82 -820.03 -2.32 -23.96 16 3 C 0.58 22.35 7.67 86.62 0.66 23.01 16 4 O -0.60 -27.09 16.37 -4.11 -0.07 -27.16 16 5 C -0.26 -8.20 6.07 -19.02 -0.12 -8.32 16 6 C -0.17 -5.02 10.92 23.54 0.26 -4.76 16 7 C 0.02 0.44 6.53 40.91 0.27 0.71 16 8 N -0.44 -8.37 3.11 -507.84 -1.58 -9.95 16 9 C 0.05 1.11 9.25 83.93 0.78 1.89 16 10 C 0.09 0.90 6.89 86.33 0.59 1.50 16 11 C -0.13 -0.88 5.92 30.71 0.18 -0.70 16 12 C -0.12 -0.94 5.97 30.79 0.18 -0.76 16 13 C -0.05 -0.67 6.26 30.10 0.19 -0.48 16 14 C 0.14 5.48 3.58 46.17 0.17 5.65 16 15 H 0.10 3.95 6.99 -2.39 -0.02 3.94 16 16 C -0.14 -5.51 6.53 31.98 0.21 -5.30 16 17 C 0.15 7.25 4.99 86.85 0.43 7.69 16 18 N -0.62 -31.53 2.97 -691.99 -2.06 -33.59 16 19 C -0.24 -13.21 10.27 84.04 0.86 -12.35 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 22 N -0.94 -54.15 10.09 21.65 0.22 -53.93 16 23 Si 0.98 44.99 29.55 68.60 2.03 47.01 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.13 5.78 6.29 86.73 0.55 6.32 16 28 H 0.07 1.97 7.61 -2.39 -0.02 1.95 16 29 H 0.07 2.91 4.79 -2.39 -0.01 2.89 16 30 H 0.09 2.49 4.92 -2.39 -0.01 2.48 16 31 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.20 4.03 4.65 -2.91 -0.01 4.02 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.07 0.59 8.11 -2.39 -0.02 0.57 16 37 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.07 3.94 5.87 -2.39 -0.01 3.92 16 44 H 0.02 0.94 5.55 -2.38 -0.01 0.93 16 45 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.02 1.00 8.04 -2.39 -0.02 0.98 16 Total: -1.00 -73.41 357.99 3.78 -69.63 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.97 Total: 17.88 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.58 Total: 14.06 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.73 Total: -121.43 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.07 Total: -27.16 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.41 3.78 -69.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033715137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.235 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds