Wall clock time and date at job start Tue Mar 31 2020 11:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36450 * 124.85060 * 2 1 4 4 C 1.34483 * 108.85934 * 180.02562 * 3 2 1 5 5 C 1.46694 * 106.33257 * 0.02562 * 4 3 2 6 6 C 1.47258 * 126.94527 * 180.02562 * 5 4 3 7 7 O 1.21623 * 119.99994 * 200.26958 * 6 5 4 8 8 N 1.34771 * 119.99987 * 20.26866 * 6 5 4 9 9 C 1.46936 * 120.55318 * 5.65285 * 8 6 5 10 10 C 1.53351 * 108.68431 * 125.67269 * 9 8 6 11 11 C 1.52116 * 109.43823 * 53.30763 * 10 9 8 12 12 C 1.54382 * 110.50950 * 64.08991 * 11 10 9 13 13 C 1.54461 * 102.87107 * 83.32944 * 12 11 10 14 14 N 1.47086 * 107.29677 * 21.50543 * 13 12 11 15 15 C 1.36932 * 125.62833 * 180.96854 * 14 13 12 16 16 H 1.08000 * 119.99992 * 175.78340 * 15 14 13 17 17 C 1.38811 * 120.00198 * 355.78496 * 15 14 13 18 18 N 1.31619 * 120.00258 * 159.38494 * 17 15 14 19 19 Si 1.86797 * 119.99821 * 339.38835 * 17 15 14 20 20 H 1.48501 * 109.47038 * 185.60885 * 19 17 15 21 21 H 1.48498 * 109.47217 * 305.61044 * 19 17 15 22 22 H 1.48498 * 109.47232 * 65.61008 * 19 17 15 23 23 C 1.47578 * 108.74001 * 1.22979 * 14 13 12 24 24 C 1.52106 * 111.59991 * 300.68933 * 11 10 9 25 25 C 1.46933 * 120.55456 * 185.67967 * 8 6 5 26 26 C 1.34659 * 124.85397 * 180.32955 * 2 1 3 27 27 H 1.09001 * 109.47142 * 89.97767 * 1 2 3 28 28 H 1.08999 * 109.47475 * 209.97510 * 1 2 3 29 29 H 1.09001 * 109.47785 * 329.97826 * 1 2 3 30 30 H 1.07998 * 125.57033 * 0.04136 * 3 2 1 31 31 H 1.07991 * 126.84116 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.60510 * 5.91812 * 9 8 6 33 33 H 1.09000 * 109.74007 * 245.51197 * 9 8 6 34 34 H 1.09003 * 109.47435 * 293.32129 * 10 9 8 35 35 H 1.08994 * 109.47566 * 173.29688 * 10 9 8 36 36 H 1.08998 * 110.73653 * 324.98340 * 12 11 10 37 37 H 1.08997 * 110.73606 * 201.67184 * 12 11 10 38 38 H 1.08995 * 109.87867 * 262.08170 * 13 12 11 39 39 H 1.08992 * 109.87866 * 140.92768 * 13 12 11 40 40 H 0.97008 * 119.99788 * 5.02119 * 18 17 15 41 41 H 1.08999 * 110.37790 * 95.26396 * 23 14 13 42 42 H 1.09002 * 110.37432 * 217.60727 * 23 14 13 43 43 H 1.08997 * 109.47349 * 179.29362 * 24 11 10 44 44 H 1.08995 * 109.48029 * 299.31569 * 24 11 10 45 45 H 1.09000 * 109.59686 * 354.08582 * 25 8 6 46 46 H 1.09006 * 109.60254 * 114.55811 * 25 8 6 47 47 H 1.08003 * 125.80188 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5374 0.7493 -0.0006 5 6 3.5462 -0.7176 -0.0016 6 6 4.7283 -1.5957 -0.0019 7 8 4.6274 -2.7513 -0.3677 8 7 5.9221 -1.1188 0.4030 9 6 6.0346 0.2349 0.9630 10 6 6.7107 0.1438 2.3364 11 6 8.0218 -0.6164 2.2057 12 6 9.0091 0.1586 1.3068 13 6 9.6435 1.1711 2.2856 14 7 9.4582 0.6404 3.6448 15 6 9.8637 1.2507 4.8016 16 1 9.6205 0.8115 5.7578 17 6 10.5873 2.4340 4.7453 18 7 10.6320 3.2286 5.7936 19 14 11.4977 2.8985 3.1817 20 1 12.2968 4.1271 3.4206 21 1 12.4021 1.7887 2.7872 22 1 10.5179 3.1489 2.0943 23 6 8.7689 -0.6614 3.5556 24 6 7.8028 -2.0224 1.6683 25 6 7.1328 -1.9438 0.2912 26 6 2.2345 -1.1050 -0.0064 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3635 0.8898 0.5142 30 1 1.8828 2.1373 0.0006 31 1 4.3980 1.4017 -0.0011 32 1 5.0408 0.6690 1.0729 33 1 6.6348 0.8587 0.3006 34 1 6.0542 -0.3808 3.0306 35 1 6.9086 1.1478 2.7114 36 1 8.4787 0.6754 0.5070 37 1 9.7668 -0.5106 0.8992 38 1 9.1463 2.1367 2.1938 39 1 10.7068 1.2776 2.0711 40 1 10.2208 2.9541 6.6282 41 1 9.4932 -1.4758 3.5643 42 1 8.0611 -0.7731 4.3770 43 1 8.7629 -2.5301 1.5768 44 1 7.1617 -2.5775 2.3530 45 1 6.8629 -2.9459 -0.0419 46 1 7.8193 -1.4907 -0.4242 47 1 1.8767 -2.1240 -0.0126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035177834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:51 Heat of formation + Delta-G solvation = 70.094253 kcal Electronic energy + Delta-G solvation = -27470.646155 eV Core-core repulsion = 23849.058700 eV Total energy + Delta-G solvation = -3621.587454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54526 -40.11483 -38.44096 -35.85661 -33.55418 -32.81323 -31.30050 -30.83081 -29.42860 -28.97885 -27.48478 -26.66153 -23.96348 -23.38848 -22.94949 -21.67888 -20.65665 -20.28712 -19.43368 -18.37228 -17.47283 -16.88569 -16.27363 -15.71825 -15.65617 -15.25038 -15.18695 -14.80557 -14.34196 -13.92751 -13.63345 -13.50432 -13.40523 -13.26903 -13.09694 -12.89726 -12.65452 -12.55367 -12.26255 -12.18688 -12.13025 -11.56197 -11.33699 -11.15374 -11.01456 -10.86081 -10.27827 -10.19666 -10.13558 -9.82569 -9.70963 -9.41443 -8.88218 -8.77352 -8.62430 -8.50606 -8.32961 -6.99493 -6.25840 -3.11766 1.68827 2.20474 2.54289 3.19711 3.44555 3.52122 3.54225 3.74440 4.34699 4.64277 4.65544 4.70083 4.72235 4.84688 4.89701 4.95909 4.97470 5.02213 5.24015 5.24893 5.31401 5.37529 5.45646 5.53561 5.63911 5.73340 5.76172 5.80279 5.85062 5.88746 5.98602 6.06532 6.09155 6.20057 6.38993 6.42693 6.48791 6.50015 6.52706 6.66189 6.74960 6.81290 6.86851 6.89233 6.96616 7.58994 7.73499 8.36641 8.39010 9.11409 9.64971 10.32036 11.24818 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003391 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.415371 B = 8254.812363 C = 8982.759802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.016 4.016 4 C -0.178 4.178 5 C -0.227 4.227 6 C 0.592 3.408 7 O -0.562 6.562 8 N -0.600 5.600 9 C 0.081 3.919 10 C -0.111 4.111 11 C -0.071 4.071 12 C -0.122 4.122 13 C 0.114 3.886 14 N -0.611 5.611 15 C -0.321 4.321 16 H 0.077 0.923 17 C -0.026 4.026 18 N -0.929 5.929 19 Si 1.071 2.929 20 H -0.303 1.303 21 H -0.301 1.301 22 H -0.282 1.282 23 C 0.147 3.853 24 C -0.116 4.116 25 C 0.115 3.885 26 C 0.069 3.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.021 0.979 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 -6.341 -14.517 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.143 4.143 4 C -0.201 4.201 5 C -0.237 4.237 6 C 0.383 3.617 7 O -0.442 6.442 8 N -0.332 5.332 9 C -0.041 4.041 10 C -0.150 4.150 11 C -0.072 4.072 12 C -0.160 4.160 13 C -0.011 4.011 14 N -0.339 5.339 15 C -0.448 4.448 16 H 0.094 0.906 17 C -0.225 4.225 18 N -0.571 5.571 19 Si 0.905 3.095 20 H -0.232 1.232 21 H -0.229 1.229 22 H -0.210 1.210 23 C 0.021 3.979 24 C -0.154 4.154 25 C -0.007 4.007 26 C -0.066 4.066 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.118 -5.672 -15.299 25.134 hybrid contribution -0.694 -1.200 0.885 1.644 sum -19.811 -6.872 -14.415 25.446 Atomic orbital electron populations 1.22113 0.76958 1.04691 1.03491 1.43623 1.06742 1.05954 1.56153 1.21842 0.90618 0.91315 1.10516 1.22419 0.96241 0.93439 1.08028 1.20334 0.92503 0.93457 1.17447 1.17405 0.82081 0.85900 0.76356 1.90730 1.85223 1.18140 1.50142 1.47840 1.07193 1.16285 1.61863 1.22688 1.03467 0.83040 0.94937 1.21644 0.95281 1.02081 0.95950 1.21099 0.95004 0.94133 0.96966 1.22651 0.97867 0.98106 0.97374 1.21973 0.97054 0.96370 0.85668 1.44881 1.68827 1.18729 1.01460 1.20116 1.33224 1.07258 0.84247 0.90565 1.25745 0.99226 0.92567 1.04992 1.70933 1.49347 1.33709 1.03129 0.83849 0.76276 0.74539 0.74818 1.23165 1.22938 1.20977 1.21536 0.93734 0.88791 0.93833 1.21718 1.00764 0.96711 0.96218 1.21613 0.85457 0.96366 0.97314 1.21729 0.89758 0.91689 1.03408 0.90700 0.89648 0.89537 0.81518 0.82289 0.86906 0.91394 0.91961 0.89655 0.91337 0.91658 0.93688 0.95865 0.92985 0.96095 0.93949 0.90717 0.91670 0.89301 0.91538 0.81040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.03 59.84 0.66 0.92 16 2 N -0.45 -3.61 3.09 -124.53 -0.38 -4.00 16 3 C -0.02 -0.14 11.34 -16.82 -0.19 -0.33 16 4 C -0.18 -1.84 8.73 -37.50 -0.33 -2.16 16 5 C -0.23 -2.84 5.90 -103.35 -0.61 -3.45 16 6 C 0.59 8.84 7.66 -12.60 -0.10 8.74 16 7 O -0.56 -9.93 16.38 5.26 0.09 -9.84 16 8 N -0.60 -8.22 2.96 -173.89 -0.51 -8.74 16 9 C 0.08 1.02 5.00 -3.62 -0.02 1.00 16 10 C -0.11 -1.69 4.87 -27.00 -0.13 -1.82 16 11 C -0.07 -1.14 0.55 -153.98 -0.08 -1.22 16 12 C -0.12 -2.01 4.92 -25.24 -0.12 -2.13 16 13 C 0.11 2.47 4.20 -2.96 -0.01 2.45 16 14 N -0.61 -14.95 3.34 -170.17 -0.57 -15.52 16 15 C -0.32 -9.27 10.53 -15.06 -0.16 -9.43 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 17 C -0.03 -0.78 5.49 -17.43 -0.10 -0.87 16 18 N -0.93 -29.48 13.70 55.49 0.76 -28.72 16 19 Si 1.07 27.10 24.57 -169.99 -4.18 22.92 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 21 H -0.30 -7.43 6.94 56.52 0.39 -7.04 16 22 H -0.28 -6.46 5.23 56.52 0.30 -6.16 16 23 C 0.15 2.96 6.16 -2.75 -0.02 2.95 16 24 C -0.12 -1.59 4.84 -27.01 -0.13 -1.72 16 25 C 0.11 1.52 6.17 -3.63 -0.02 1.50 16 26 C 0.07 0.72 11.18 -16.84 -0.19 0.53 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 29 H 0.09 0.21 8.13 -51.93 -0.42 -0.22 16 30 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.16 1.48 5.88 -52.49 -0.31 1.17 16 32 H 0.11 1.30 3.41 -51.93 -0.18 1.12 16 33 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.46 7.81 -51.93 -0.41 1.06 16 36 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 37 H 0.06 1.01 7.98 -51.93 -0.41 0.59 16 38 H 0.05 1.02 6.51 -51.93 -0.34 0.68 16 39 H 0.02 0.54 4.27 -51.93 -0.22 0.32 16 40 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 41 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 42 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 43 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.23 6.99 -51.93 -0.36 0.87 16 46 H 0.07 0.81 7.62 -51.93 -0.40 0.42 16 47 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -35.95 352.79 -8.22 -44.16 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.19 Total: -0.54 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.55 Total: -5.05 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.71 Total: -56.97 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -4.18 Total: 22.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.95 -8.22 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035177834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.255 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds