Wall clock time and date at job start Tue Mar 31 2020 11:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36450 * 124.85060 * 2 1 4 4 C 1.34483 * 108.85934 * 180.02562 * 3 2 1 5 5 C 1.46694 * 106.33257 * 0.02562 * 4 3 2 6 6 C 1.47258 * 126.94527 * 180.02562 * 5 4 3 7 7 O 1.21623 * 119.99994 * 200.26958 * 6 5 4 8 8 N 1.34771 * 119.99987 * 20.26866 * 6 5 4 9 9 C 1.46936 * 120.55318 * 5.65285 * 8 6 5 10 10 C 1.53351 * 108.68431 * 125.67269 * 9 8 6 11 11 C 1.52116 * 109.43823 * 53.30763 * 10 9 8 12 12 C 1.54382 * 110.50950 * 64.08991 * 11 10 9 13 13 C 1.54461 * 102.87107 * 83.32944 * 12 11 10 14 14 N 1.47086 * 107.29677 * 21.50543 * 13 12 11 15 15 C 1.36932 * 125.62833 * 180.96854 * 14 13 12 16 16 H 1.08000 * 119.99992 * 175.78340 * 15 14 13 17 17 C 1.38811 * 120.00198 * 355.78496 * 15 14 13 18 18 N 1.31619 * 120.00258 * 159.38494 * 17 15 14 19 19 Si 1.86797 * 119.99821 * 339.38835 * 17 15 14 20 20 H 1.48501 * 109.47038 * 185.60885 * 19 17 15 21 21 H 1.48498 * 109.47217 * 305.61044 * 19 17 15 22 22 H 1.48498 * 109.47232 * 65.61008 * 19 17 15 23 23 C 1.47578 * 108.74001 * 1.22979 * 14 13 12 24 24 C 1.52106 * 111.59991 * 300.68933 * 11 10 9 25 25 C 1.46933 * 120.55456 * 185.67967 * 8 6 5 26 26 C 1.34659 * 124.85397 * 180.32955 * 2 1 3 27 27 H 1.09001 * 109.47142 * 89.97767 * 1 2 3 28 28 H 1.08999 * 109.47475 * 209.97510 * 1 2 3 29 29 H 1.09001 * 109.47785 * 329.97826 * 1 2 3 30 30 H 1.07998 * 125.57033 * 0.04136 * 3 2 1 31 31 H 1.07991 * 126.84116 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.60510 * 5.91812 * 9 8 6 33 33 H 1.09000 * 109.74007 * 245.51197 * 9 8 6 34 34 H 1.09003 * 109.47435 * 293.32129 * 10 9 8 35 35 H 1.08994 * 109.47566 * 173.29688 * 10 9 8 36 36 H 1.08998 * 110.73653 * 324.98340 * 12 11 10 37 37 H 1.08997 * 110.73606 * 201.67184 * 12 11 10 38 38 H 1.08995 * 109.87867 * 262.08170 * 13 12 11 39 39 H 1.08992 * 109.87866 * 140.92768 * 13 12 11 40 40 H 0.97008 * 119.99788 * 5.02119 * 18 17 15 41 41 H 1.08999 * 110.37790 * 95.26396 * 23 14 13 42 42 H 1.09002 * 110.37432 * 217.60727 * 23 14 13 43 43 H 1.08997 * 109.47349 * 179.29362 * 24 11 10 44 44 H 1.08995 * 109.48029 * 299.31569 * 24 11 10 45 45 H 1.09000 * 109.59686 * 354.08582 * 25 8 6 46 46 H 1.09006 * 109.60254 * 114.55811 * 25 8 6 47 47 H 1.08003 * 125.80188 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5374 0.7493 -0.0006 5 6 3.5462 -0.7176 -0.0016 6 6 4.7283 -1.5957 -0.0019 7 8 4.6274 -2.7513 -0.3677 8 7 5.9221 -1.1188 0.4030 9 6 6.0346 0.2349 0.9630 10 6 6.7107 0.1438 2.3364 11 6 8.0218 -0.6164 2.2057 12 6 9.0091 0.1586 1.3068 13 6 9.6435 1.1711 2.2856 14 7 9.4582 0.6404 3.6448 15 6 9.8637 1.2507 4.8016 16 1 9.6205 0.8115 5.7578 17 6 10.5873 2.4340 4.7453 18 7 10.6320 3.2286 5.7936 19 14 11.4977 2.8985 3.1817 20 1 12.2968 4.1271 3.4206 21 1 12.4021 1.7887 2.7872 22 1 10.5179 3.1489 2.0943 23 6 8.7689 -0.6614 3.5556 24 6 7.8028 -2.0224 1.6683 25 6 7.1328 -1.9438 0.2912 26 6 2.2345 -1.1050 -0.0064 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3635 0.8898 0.5142 30 1 1.8828 2.1373 0.0006 31 1 4.3980 1.4017 -0.0011 32 1 5.0408 0.6690 1.0729 33 1 6.6348 0.8587 0.3006 34 1 6.0542 -0.3808 3.0306 35 1 6.9086 1.1478 2.7114 36 1 8.4787 0.6754 0.5070 37 1 9.7668 -0.5106 0.8992 38 1 9.1463 2.1367 2.1938 39 1 10.7068 1.2776 2.0711 40 1 10.2208 2.9541 6.6282 41 1 9.4932 -1.4758 3.5643 42 1 8.0611 -0.7731 4.3770 43 1 8.7629 -2.5301 1.5768 44 1 7.1617 -2.5775 2.3530 45 1 6.8629 -2.9459 -0.0419 46 1 7.8193 -1.4907 -0.4242 47 1 1.8767 -2.1240 -0.0126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035177834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:50 Heat of formation + Delta-G solvation = 46.525126 kcal Electronic energy + Delta-G solvation = -27471.668189 eV Core-core repulsion = 23849.058700 eV Total energy + Delta-G solvation = -3622.609488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29817 -41.27937 -39.71830 -37.28125 -34.98009 -33.95856 -32.85041 -32.02085 -30.61452 -30.16981 -28.74654 -27.47549 -25.51528 -24.62121 -24.23318 -22.85811 -21.95227 -21.41255 -20.41078 -19.80597 -19.00221 -18.00992 -17.41132 -16.85616 -16.73753 -16.53819 -16.37230 -15.81811 -15.47990 -15.26134 -14.98438 -14.94505 -14.59837 -14.48945 -14.22839 -14.00885 -13.73209 -13.54421 -13.27501 -13.10168 -13.03528 -12.95689 -12.88146 -12.71902 -12.46429 -12.15336 -11.85013 -11.61910 -11.56752 -11.46982 -11.22314 -10.86296 -10.76706 -10.55172 -9.66706 -9.40097 -9.21425 -9.08442 -8.61836 -5.39579 0.82307 1.42711 1.52062 1.53562 1.74558 1.92258 2.25561 2.54297 2.56560 3.11760 3.37892 3.57569 3.69407 3.80429 3.94096 4.01917 4.08737 4.16044 4.16565 4.26100 4.35849 4.40193 4.46285 4.48768 4.60123 4.62345 4.63424 4.75811 4.76345 4.77957 4.85097 4.90081 4.94126 5.02633 5.04724 5.06924 5.11286 5.18009 5.28247 5.42341 5.44154 5.56902 5.68942 5.78583 6.10368 6.12411 6.37236 6.54678 6.87104 7.29635 7.50299 8.15673 8.89988 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003391 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.415371 B = 8254.812363 C = 8982.759802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.007 4.007 4 C -0.196 4.196 5 C -0.263 4.263 6 C 0.586 3.414 7 O -0.600 6.600 8 N -0.600 5.600 9 C 0.090 3.910 10 C -0.107 4.107 11 C -0.058 4.058 12 C -0.110 4.110 13 C 0.104 3.896 14 N -0.630 5.630 15 C -0.311 4.311 16 H 0.041 0.959 17 C -0.084 4.084 18 N -0.964 5.964 19 Si 1.109 2.891 20 H -0.315 1.315 21 H -0.290 1.290 22 H -0.240 1.240 23 C 0.141 3.859 24 C -0.106 4.106 25 C 0.117 3.883 26 C 0.065 3.935 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.020 0.980 40 H 0.245 0.755 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 -6.095 -17.727 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.134 4.134 4 C -0.219 4.219 5 C -0.273 4.273 6 C 0.379 3.621 7 O -0.483 6.483 8 N -0.331 5.331 9 C -0.032 4.032 10 C -0.145 4.145 11 C -0.059 4.059 12 C -0.147 4.147 13 C -0.020 4.020 14 N -0.357 5.357 15 C -0.440 4.440 16 H 0.059 0.941 17 C -0.276 4.276 18 N -0.609 5.609 19 Si 0.936 3.064 20 H -0.244 1.244 21 H -0.218 1.218 22 H -0.164 1.164 23 C 0.016 3.984 24 C -0.145 4.145 25 C -0.006 4.006 26 C -0.072 4.072 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.217 0.783 31 H 0.184 0.816 32 H 0.144 0.856 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.750 -5.450 -18.528 28.348 hybrid contribution -0.332 -1.355 2.006 2.443 sum -21.082 -6.805 -16.523 27.636 Atomic orbital electron populations 1.22438 0.74331 1.06244 1.04880 1.43932 1.08339 1.05165 1.54366 1.22364 0.90119 0.92628 1.08327 1.22541 0.97620 0.92415 1.09367 1.20368 0.92410 0.94442 1.20105 1.17827 0.82906 0.85726 0.75680 1.90696 1.85817 1.19790 1.52039 1.47905 1.07150 1.16581 1.61478 1.22708 1.04312 0.82821 0.93319 1.21568 0.94979 1.00486 0.97505 1.21001 0.94821 0.95795 0.94323 1.22668 0.98144 0.97220 0.96703 1.22144 0.97157 0.97656 0.85057 1.44936 1.68930 1.20314 1.01545 1.20003 1.31935 1.07104 0.84952 0.94123 1.27079 1.00124 0.93070 1.07319 1.71047 1.51338 1.35089 1.03406 0.83433 0.75944 0.74062 0.72921 1.24402 1.21800 1.16405 1.21721 0.93558 0.87043 0.96065 1.21640 1.01505 0.94941 0.96403 1.21635 0.85558 0.96414 0.96965 1.21888 0.89703 0.92732 1.02898 0.89348 0.88643 0.87587 0.78313 0.81557 0.85573 0.89716 0.92937 0.91730 0.88308 0.89638 0.94418 0.96221 0.94604 0.95713 0.95557 0.89291 0.92472 0.89963 0.89585 0.80492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 11.03 127.77 1.41 1.67 16 2 N -0.44 -5.91 3.09 -547.91 -1.69 -7.60 16 3 C -0.01 -0.10 11.34 83.11 0.94 0.84 16 4 C -0.20 -3.60 8.73 23.62 0.21 -3.39 16 5 C -0.26 -6.23 5.90 -19.04 -0.11 -6.34 16 6 C 0.59 16.94 7.66 86.62 0.66 17.60 16 7 O -0.60 -21.08 16.38 -4.11 -0.07 -21.15 16 8 N -0.60 -15.26 2.96 -822.32 -2.43 -17.70 16 9 C 0.09 2.04 5.00 86.41 0.43 2.48 16 10 C -0.11 -3.09 4.87 30.42 0.15 -2.95 16 11 C -0.06 -1.75 0.55 -51.84 -0.03 -1.78 16 12 C -0.11 -3.20 4.92 31.56 0.16 -3.04 16 13 C 0.10 4.23 4.20 86.76 0.36 4.60 16 14 N -0.63 -30.66 3.34 -692.30 -2.31 -32.98 16 15 C -0.31 -18.48 10.53 84.03 0.88 -17.59 16 16 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 17 C -0.08 -5.07 5.49 84.86 0.47 -4.61 16 18 N -0.96 -63.25 13.70 21.65 0.30 -62.95 16 19 Si 1.11 54.16 24.57 68.60 1.69 55.85 16 20 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 21 H -0.29 -13.55 6.94 99.48 0.69 -12.86 16 22 H -0.24 -10.02 5.23 99.48 0.52 -9.50 16 23 C 0.14 5.65 6.16 86.63 0.53 6.18 16 24 C -0.11 -2.69 4.84 30.41 0.15 -2.54 16 25 C 0.12 2.78 6.17 86.41 0.53 3.32 16 26 C 0.06 1.25 11.18 83.92 0.94 2.19 16 27 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.09 0.25 8.13 -2.39 -0.02 0.23 16 29 H 0.11 0.09 8.13 -2.39 -0.02 0.07 16 30 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.17 2.64 5.88 -2.91 -0.02 2.62 16 32 H 0.13 2.62 3.41 -2.39 -0.01 2.61 16 33 H 0.08 1.68 6.56 -2.39 -0.02 1.67 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 2.15 7.81 -2.39 -0.02 2.14 16 36 H 0.10 2.34 6.18 -2.39 -0.01 2.32 16 37 H 0.09 2.21 7.98 -2.39 -0.02 2.19 16 38 H 0.04 1.60 6.51 -2.39 -0.02 1.58 16 39 H 0.02 0.86 4.27 -2.39 -0.01 0.85 16 40 H 0.24 16.19 8.73 -92.70 -0.81 15.38 16 41 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 42 H 0.03 1.11 8.03 -2.39 -0.02 1.09 16 43 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 2.14 6.99 -2.39 -0.02 2.12 16 46 H 0.09 1.75 7.62 -2.38 -0.02 1.73 16 47 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -81.57 352.79 3.89 -77.69 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.73 Total: 12.22 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 7.68 Total: -3.37 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -6.14 Total: -121.23 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.07 Total: -21.15 kcal Atomic # 14 Polarization: 54.16 SS G_CDS: 1.69 Total: 55.85 kcal Total: -81.57 3.89 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035177834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.211 kcal (2) G-P(sol) polarization free energy of solvation -81.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds