Wall clock time and date at job start Tue Mar 31 2020 11:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99977 * 2 1 4 4 C 1.46900 * 111.00215 * 123.95716 * 2 1 3 5 5 C 1.50704 * 109.47079 * 66.04350 * 4 2 1 6 6 C 1.38352 * 119.85049 * 269.72475 * 5 4 2 7 7 C 1.37966 * 120.13949 * 179.76737 * 6 5 4 8 8 C 1.39576 * 119.85346 * 0.50750 * 7 6 5 9 9 C 1.47838 * 120.14477 * 179.72430 * 8 7 6 10 10 O 1.21552 * 120.00250 * 180.02562 * 9 8 7 11 11 N 1.34784 * 120.00385 * 0.02594 * 9 8 7 12 12 C 1.46496 * 120.00499 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47265 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.96272 * 306.67219 * 13 12 11 15 15 C 1.53947 * 113.77172 * 174.99894 * 13 12 11 16 16 C 1.53941 * 86.29169 * 222.09150 * 15 13 12 17 17 N 1.47574 * 113.77337 * 78.50113 * 13 12 11 18 18 C 1.36941 * 134.49154 * 318.94736 * 17 13 12 19 19 H 1.07999 * 120.00444 * 7.04959 * 18 17 13 20 20 C 1.38814 * 120.00120 * 187.05547 * 18 17 13 21 21 N 1.31622 * 119.99851 * 7.60449 * 20 18 17 22 22 Si 1.86801 * 120.00117 * 187.61209 * 20 18 17 23 23 H 1.48491 * 109.47373 * 94.80628 * 22 20 18 24 24 H 1.48501 * 109.46839 * 214.81209 * 22 20 18 25 25 H 1.48499 * 109.46720 * 334.80403 * 22 20 18 26 26 C 1.39581 * 119.70778 * 359.74826 * 8 7 6 27 27 C 1.37949 * 119.85676 * 359.97438 * 26 8 7 28 28 H 1.09001 * 109.46848 * 296.04167 * 1 2 3 29 29 H 1.08993 * 109.47056 * 56.04252 * 1 2 3 30 30 H 1.09003 * 109.47244 * 176.04707 * 1 2 3 31 31 H 1.09000 * 109.47055 * 183.95391 * 3 2 1 32 32 H 1.08996 * 109.46857 * 303.95422 * 3 2 1 33 33 H 1.08996 * 109.46679 * 63.95846 * 3 2 1 34 34 H 1.08995 * 109.47369 * 186.04596 * 4 2 1 35 35 H 1.08999 * 109.46810 * 306.04683 * 4 2 1 36 36 H 1.08000 * 119.93349 * 0.02562 * 6 5 4 37 37 H 1.08008 * 120.07161 * 180.23519 * 7 6 5 38 38 H 0.97008 * 119.99208 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.46990 * 299.99651 * 12 11 9 40 40 H 1.09003 * 109.47082 * 59.99321 * 12 11 9 41 41 H 1.09007 * 113.73588 * 336.43657 * 15 13 12 42 42 H 1.08995 * 113.74137 * 107.63352 * 15 13 12 43 43 H 1.08992 * 113.77219 * 137.90542 * 16 15 13 44 44 H 1.09006 * 113.76807 * 269.30514 * 16 15 13 45 45 H 0.96993 * 120.00061 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.06733 * 179.97438 * 26 8 7 47 47 H 1.07994 * 119.93233 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6370 -2.2205 0.9727 6 6 0.4521 -2.7017 1.5005 7 6 0.1156 -4.0311 1.3490 8 6 0.9786 -4.8933 0.6707 9 6 0.6274 -6.3203 0.5099 10 8 1.3810 -7.0689 -0.0808 11 7 -0.5286 -6.7913 1.0184 12 6 -0.8765 -8.2055 0.8596 13 6 -2.2281 -8.4759 1.5235 14 1 -2.2660 -8.1446 2.5612 15 6 -2.7484 -9.9091 1.3104 16 6 -4.1275 -9.2665 1.0761 17 7 -3.3848 -8.0432 0.7157 18 6 -3.6589 -6.9469 -0.0577 19 1 -2.8858 -6.2197 -0.2571 20 6 -4.9306 -6.7701 -0.5854 21 7 -5.9105 -7.5709 -0.2234 22 14 -5.2513 -5.3960 -1.8095 23 1 -5.1326 -5.9263 -3.1914 24 1 -6.6195 -4.8573 -1.6017 25 1 -4.2567 -4.3118 -1.6082 26 6 2.1749 -4.4023 0.1454 27 6 2.4967 -3.0697 0.2989 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 3.0797 -0.6612 1.1756 35 1 1.5612 -0.3873 2.0627 36 1 -0.2129 -2.0344 2.0287 37 1 -0.8115 -4.4048 1.7582 38 1 -1.1299 -6.1939 1.4902 39 1 -0.9375 -8.4476 -0.2015 40 1 -0.1110 -8.8229 1.3297 41 1 -2.3367 -10.3986 0.4278 42 1 -2.6983 -10.5315 2.2038 43 1 -4.6812 -9.7050 0.2459 44 1 -4.7253 -9.1667 1.9821 45 1 -6.7990 -7.4477 -0.5924 46 1 2.8472 -5.0644 -0.3802 47 1 3.4218 -2.6884 -0.1075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038821563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:41 Heat of formation + Delta-G solvation = 50.724345 kcal Electronic energy + Delta-G solvation = -26243.287429 eV Core-core repulsion = 22620.860033 eV Total energy + Delta-G solvation = -3622.427396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.15089 -38.88530 -37.90472 -36.95614 -34.15626 -32.26870 -31.95565 -31.03200 -28.35876 -27.87348 -27.80148 -26.74730 -23.48921 -23.37896 -22.76183 -21.96281 -21.38393 -20.08598 -19.16946 -17.89270 -16.57553 -16.15151 -15.94231 -15.76814 -15.40535 -15.31953 -14.88234 -14.56580 -14.43225 -14.31735 -13.84551 -13.59956 -13.53614 -13.16940 -12.86977 -12.65826 -12.59854 -12.31526 -11.98553 -11.91974 -11.75393 -11.42318 -11.40638 -11.15930 -11.09402 -11.01033 -10.76718 -10.52380 -10.08992 -9.77389 -9.68413 -9.35800 -9.01553 -8.97501 -8.77719 -8.64821 -8.50642 -6.91307 -5.79969 -3.10851 0.83226 1.34366 2.98036 3.37393 3.43365 3.44589 3.51733 3.71161 4.03932 4.42313 4.49235 4.64000 4.84314 4.86484 4.95854 5.04246 5.04894 5.15787 5.18348 5.30190 5.33145 5.37782 5.40894 5.52644 5.54646 5.59987 5.68410 5.77133 5.78981 5.90645 5.93765 6.07662 6.23296 6.29166 6.37517 6.40382 6.42094 6.60085 6.65803 6.69832 6.71079 6.82285 6.90003 7.20767 7.39254 7.54265 7.87966 7.95894 8.53132 9.02538 9.69334 10.58521 11.37944 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.003549 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.707795 B = 7887.864518 C = 9613.406659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.091 3.909 5 C -0.062 4.062 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.126 4.126 9 C 0.552 3.448 10 O -0.549 6.549 11 N -0.708 5.708 12 C 0.123 3.877 13 C 0.124 3.876 14 H 0.049 0.951 15 C -0.156 4.156 16 C 0.166 3.834 17 N -0.601 5.601 18 C -0.221 4.221 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.062 4.062 27 C -0.109 4.109 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.402 0.598 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.032 0.968 45 H 0.253 0.747 46 H 0.135 0.865 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.848 12.078 5.780 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.036 4.036 5 C -0.062 4.062 6 C -0.140 4.140 7 C -0.102 4.102 8 C -0.129 4.129 9 C 0.339 3.661 10 O -0.428 6.428 11 N -0.358 5.358 12 C -0.001 4.001 13 C 0.017 3.983 14 H 0.066 0.934 15 C -0.195 4.195 16 C 0.040 3.960 17 N -0.328 5.328 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.081 4.081 27 C -0.127 4.127 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.238 0.762 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.153 0.847 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.293 11.516 4.738 19.722 hybrid contribution -1.083 1.579 0.331 1.944 sum 14.210 13.096 5.069 19.978 Atomic orbital electron populations 1.22518 0.86850 1.03257 1.00448 1.61985 1.08558 1.13552 1.42505 1.22397 1.00756 0.88608 1.00614 1.21108 1.00552 0.90010 0.91910 1.19850 0.94549 0.94819 0.97017 1.20964 0.96577 0.95389 1.01044 1.21367 0.98584 0.93432 0.96778 1.20065 0.96768 0.93757 1.02339 1.18264 0.81597 0.87241 0.78964 1.90729 1.50833 1.58721 1.42548 1.45913 1.20837 1.12089 1.56964 1.21785 0.96311 0.80098 1.01925 1.22499 0.88063 0.93583 0.94186 0.93378 1.23771 1.00297 0.95034 1.00431 1.22064 0.91245 0.84813 0.97842 1.46171 1.13318 1.21159 1.52129 1.18965 0.94850 0.99523 1.21575 0.90343 1.24782 0.95373 0.99177 1.00876 1.69843 1.00746 1.40045 1.45827 0.86208 0.77244 0.81465 0.81510 1.21561 1.21767 1.20577 1.21260 0.95236 0.95290 0.96306 1.20933 0.99994 0.92805 0.99003 0.95522 0.91282 0.90472 0.91292 0.91175 0.95648 0.89731 0.93707 0.85818 0.85287 0.76224 0.90868 0.92016 0.90496 0.92668 0.92123 0.95012 0.93681 0.84691 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.14 60.07 0.55 0.71 16 2 N -0.54 -5.13 5.01 -252.72 -1.27 -6.40 16 3 C 0.02 0.17 9.57 60.07 0.57 0.75 16 4 C 0.09 0.80 5.11 -4.97 -0.03 0.78 16 5 C -0.06 -0.66 4.88 -104.53 -0.51 -1.17 16 6 C -0.12 -1.37 7.96 -39.64 -0.32 -1.68 16 7 C -0.08 -1.09 9.54 -39.18 -0.37 -1.46 16 8 C -0.13 -1.89 5.87 -104.97 -0.62 -2.50 16 9 C 0.55 9.83 7.77 -12.33 -0.10 9.73 16 10 O -0.55 -11.31 16.35 5.32 0.09 -11.22 16 11 N -0.71 -12.30 5.47 -61.25 -0.33 -12.63 16 12 C 0.12 2.24 5.54 -4.05 -0.02 2.22 16 13 C 0.12 2.38 4.33 -66.87 -0.29 2.09 16 14 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.16 -2.82 7.86 -25.81 -0.20 -3.02 16 16 C 0.17 3.77 7.31 -2.98 -0.02 3.75 16 17 N -0.60 -14.58 3.56 -170.77 -0.61 -15.19 16 18 C -0.22 -5.93 10.49 -15.06 -0.16 -6.09 16 19 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 20 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -26.87 11.76 55.49 0.65 -26.21 16 22 Si 0.91 22.08 29.56 -169.99 -5.02 17.05 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 C -0.06 -0.84 9.60 -39.19 -0.38 -1.21 16 27 C -0.11 -1.23 9.68 -39.64 -0.38 -1.61 16 28 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 30 H 0.08 0.85 6.18 -51.93 -0.32 0.53 16 31 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.63 8.00 -51.93 -0.42 0.22 16 35 H 0.04 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.12 1.18 8.04 -52.49 -0.42 0.75 16 37 H 0.13 1.60 6.41 -52.48 -0.34 1.27 16 38 H 0.40 6.58 6.51 -40.82 -0.27 6.32 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.36 8.10 -51.92 -0.42 0.94 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.52 7.69 -51.93 -0.40 1.12 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.14 1.81 7.65 -52.48 -0.40 1.41 16 47 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -32.36 385.34 -10.64 -43.00 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.59 Total: 4.76 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.36 Total: 1.03 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -1.56 Total: -60.43 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.36 -10.64 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038821563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.728 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds