Wall clock time and date at job start Tue Mar 31 2020 11:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99977 * 2 1 4 4 C 1.46900 * 111.00215 * 123.95716 * 2 1 3 5 5 C 1.50704 * 109.47079 * 66.04350 * 4 2 1 6 6 C 1.38352 * 119.85049 * 269.72475 * 5 4 2 7 7 C 1.37966 * 120.13949 * 179.76737 * 6 5 4 8 8 C 1.39576 * 119.85346 * 0.50750 * 7 6 5 9 9 C 1.47838 * 120.14477 * 179.72430 * 8 7 6 10 10 O 1.21552 * 120.00250 * 180.02562 * 9 8 7 11 11 N 1.34784 * 120.00385 * 0.02594 * 9 8 7 12 12 C 1.46496 * 120.00499 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47265 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.96272 * 306.67219 * 13 12 11 15 15 C 1.53947 * 113.77172 * 174.99894 * 13 12 11 16 16 C 1.53941 * 86.29169 * 222.09150 * 15 13 12 17 17 N 1.47574 * 113.77337 * 78.50113 * 13 12 11 18 18 C 1.36941 * 134.49154 * 318.94736 * 17 13 12 19 19 H 1.07999 * 120.00444 * 7.04959 * 18 17 13 20 20 C 1.38814 * 120.00120 * 187.05547 * 18 17 13 21 21 N 1.31622 * 119.99851 * 7.60449 * 20 18 17 22 22 Si 1.86801 * 120.00117 * 187.61209 * 20 18 17 23 23 H 1.48491 * 109.47373 * 94.80628 * 22 20 18 24 24 H 1.48501 * 109.46839 * 214.81209 * 22 20 18 25 25 H 1.48499 * 109.46720 * 334.80403 * 22 20 18 26 26 C 1.39581 * 119.70778 * 359.74826 * 8 7 6 27 27 C 1.37949 * 119.85676 * 359.97438 * 26 8 7 28 28 H 1.09001 * 109.46848 * 296.04167 * 1 2 3 29 29 H 1.08993 * 109.47056 * 56.04252 * 1 2 3 30 30 H 1.09003 * 109.47244 * 176.04707 * 1 2 3 31 31 H 1.09000 * 109.47055 * 183.95391 * 3 2 1 32 32 H 1.08996 * 109.46857 * 303.95422 * 3 2 1 33 33 H 1.08996 * 109.46679 * 63.95846 * 3 2 1 34 34 H 1.08995 * 109.47369 * 186.04596 * 4 2 1 35 35 H 1.08999 * 109.46810 * 306.04683 * 4 2 1 36 36 H 1.08000 * 119.93349 * 0.02562 * 6 5 4 37 37 H 1.08008 * 120.07161 * 180.23519 * 7 6 5 38 38 H 0.97008 * 119.99208 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.46990 * 299.99651 * 12 11 9 40 40 H 1.09003 * 109.47082 * 59.99321 * 12 11 9 41 41 H 1.09007 * 113.73588 * 336.43657 * 15 13 12 42 42 H 1.08995 * 113.74137 * 107.63352 * 15 13 12 43 43 H 1.08992 * 113.77219 * 137.90542 * 16 15 13 44 44 H 1.09006 * 113.76807 * 269.30514 * 16 15 13 45 45 H 0.96993 * 120.00061 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.06733 * 179.97438 * 26 8 7 47 47 H 1.07994 * 119.93233 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6370 -2.2205 0.9727 6 6 0.4521 -2.7017 1.5005 7 6 0.1156 -4.0311 1.3490 8 6 0.9786 -4.8933 0.6707 9 6 0.6274 -6.3203 0.5099 10 8 1.3810 -7.0689 -0.0808 11 7 -0.5286 -6.7913 1.0184 12 6 -0.8765 -8.2055 0.8596 13 6 -2.2281 -8.4759 1.5235 14 1 -2.2660 -8.1446 2.5612 15 6 -2.7484 -9.9091 1.3104 16 6 -4.1275 -9.2665 1.0761 17 7 -3.3848 -8.0432 0.7157 18 6 -3.6589 -6.9469 -0.0577 19 1 -2.8858 -6.2197 -0.2571 20 6 -4.9306 -6.7701 -0.5854 21 7 -5.9105 -7.5709 -0.2234 22 14 -5.2513 -5.3960 -1.8095 23 1 -5.1326 -5.9263 -3.1914 24 1 -6.6195 -4.8573 -1.6017 25 1 -4.2567 -4.3118 -1.6082 26 6 2.1749 -4.4023 0.1454 27 6 2.4967 -3.0697 0.2989 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 3.0797 -0.6612 1.1756 35 1 1.5612 -0.3873 2.0627 36 1 -0.2129 -2.0344 2.0287 37 1 -0.8115 -4.4048 1.7582 38 1 -1.1299 -6.1939 1.4902 39 1 -0.9375 -8.4476 -0.2015 40 1 -0.1110 -8.8229 1.3297 41 1 -2.3367 -10.3986 0.4278 42 1 -2.6983 -10.5315 2.2038 43 1 -4.6812 -9.7050 0.2459 44 1 -4.7253 -9.1667 1.9821 45 1 -6.7990 -7.4477 -0.5924 46 1 2.8472 -5.0644 -0.3802 47 1 3.4218 -2.6884 -0.1075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038821563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:40 Heat of formation + Delta-G solvation = 29.491790 kcal Electronic energy + Delta-G solvation = -26244.208142 eV Core-core repulsion = 22620.860033 eV Total energy + Delta-G solvation = -3623.348109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32315 -40.10049 -39.43005 -37.78875 -35.64090 -34.23659 -32.96434 -31.99521 -29.95287 -29.49913 -28.46579 -27.76429 -25.29845 -24.57067 -23.86989 -23.17041 -22.33283 -21.33489 -20.82075 -19.27007 -18.30723 -17.35668 -17.13341 -16.83092 -16.44619 -16.30534 -16.23804 -16.04367 -15.68358 -15.38047 -15.32391 -14.92807 -14.75557 -14.53731 -14.08841 -13.73614 -13.42525 -13.25024 -13.23549 -13.05702 -13.00354 -12.71166 -12.68113 -12.63886 -12.47615 -12.26877 -12.24209 -11.96195 -11.89415 -11.53378 -11.39520 -10.92240 -10.80635 -10.16963 -9.96210 -9.79139 -9.28783 -8.89621 -7.89979 -5.19723 -0.20486 0.39688 1.41715 1.44706 1.51477 1.79601 2.17361 2.46710 2.76462 3.23105 3.31942 3.36624 3.62661 3.78181 3.84455 3.96487 4.00018 4.11532 4.22683 4.30185 4.34337 4.39210 4.44989 4.57074 4.59686 4.62420 4.70573 4.74577 4.76539 4.84877 4.86696 5.02944 5.04258 5.04931 5.05840 5.09314 5.27432 5.31277 5.35885 5.44005 5.52709 5.57821 5.73728 5.88335 5.95574 6.01578 6.08152 6.50738 6.94801 7.15440 7.64267 8.59905 9.28248 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.003549 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.707795 B = 7887.864518 C = 9613.406659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.559 5.559 3 C 0.025 3.975 4 C 0.093 3.907 5 C -0.053 4.053 6 C -0.120 4.120 7 C -0.088 4.088 8 C -0.151 4.151 9 C 0.550 3.450 10 O -0.585 6.585 11 N -0.707 5.707 12 C 0.131 3.869 13 C 0.131 3.869 14 H 0.069 0.931 15 C -0.130 4.130 16 C 0.157 3.843 17 N -0.629 5.629 18 C -0.214 4.214 19 H 0.082 0.918 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.962 3.038 23 H -0.296 1.296 24 H -0.294 1.294 25 H -0.267 1.267 26 C -0.072 4.072 27 C -0.106 4.106 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.027 0.973 44 H 0.024 0.976 45 H 0.246 0.754 46 H 0.128 0.872 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.642 14.025 6.889 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.283 5.283 3 C -0.123 4.123 4 C -0.034 4.034 5 C -0.054 4.054 6 C -0.138 4.138 7 C -0.107 4.107 8 C -0.154 4.154 9 C 0.339 3.661 10 O -0.467 6.467 11 N -0.357 5.357 12 C 0.007 3.993 13 C 0.025 3.975 14 H 0.087 0.913 15 C -0.168 4.168 16 C 0.032 3.968 17 N -0.355 5.355 18 C -0.343 4.343 19 H 0.099 0.901 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.791 3.209 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.192 1.192 26 C -0.091 4.091 27 C -0.124 4.124 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.243 0.757 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.146 0.854 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.116 13.478 5.875 22.564 hybrid contribution -1.556 1.018 0.024 1.860 sum 15.560 14.496 5.899 22.069 Atomic orbital electron populations 1.22483 0.87255 1.02228 1.01109 1.61972 1.08412 1.14985 1.42923 1.22437 1.01349 0.87390 1.01112 1.21162 1.01715 0.88308 0.92255 1.20168 0.93798 0.96048 0.95378 1.21210 0.97086 0.94780 1.00714 1.21440 0.98423 0.94103 0.96698 1.19941 0.98267 0.92366 1.04808 1.18727 0.81034 0.88334 0.77995 1.90697 1.51865 1.59931 1.44202 1.45891 1.20952 1.11861 1.56952 1.21603 0.96413 0.81101 1.00212 1.22664 0.86738 0.93863 0.94251 0.91342 1.23569 0.96026 0.94860 1.02387 1.22044 0.93268 0.85229 0.96248 1.46518 1.15279 1.20823 1.52884 1.19269 0.94555 0.99667 1.20789 0.90069 1.25481 0.95621 1.01658 1.03127 1.69999 1.00729 1.41953 1.47474 0.85301 0.77029 0.79521 0.79033 1.22327 1.22094 1.19152 1.21327 0.94823 0.96364 0.96573 1.21179 1.00919 0.91783 0.98510 0.94515 0.91118 0.92220 0.90233 0.91009 0.94861 0.88011 0.92539 0.83821 0.85084 0.75658 0.93725 0.89923 0.90093 0.88588 0.95399 0.95768 0.94500 0.85375 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.14 127.69 1.17 1.46 16 2 N -0.56 -8.96 5.01 -953.47 -4.78 -13.73 16 3 C 0.02 0.28 9.57 127.69 1.22 1.50 16 4 C 0.09 1.31 5.11 85.56 0.44 1.75 16 5 C -0.05 -1.01 4.88 -19.81 -0.10 -1.10 16 6 C -0.12 -2.45 7.96 22.23 0.18 -2.27 16 7 C -0.09 -2.21 9.54 22.53 0.21 -2.00 16 8 C -0.15 -4.46 5.87 -20.09 -0.12 -4.58 16 9 C 0.55 19.66 7.77 86.78 0.67 20.34 16 10 O -0.58 -24.47 16.35 -3.88 -0.06 -24.53 16 11 N -0.71 -24.23 5.47 -465.98 -2.55 -26.78 16 12 C 0.13 4.67 5.54 86.38 0.48 5.15 16 13 C 0.13 4.81 4.33 45.09 0.20 5.00 16 14 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.13 -4.43 7.86 31.25 0.25 -4.19 16 16 C 0.16 7.21 7.31 86.48 0.63 7.84 16 17 N -0.63 -30.46 3.56 -694.18 -2.47 -32.94 16 18 C -0.21 -11.54 10.49 84.03 0.88 -10.66 16 19 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 20 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 21 N -0.95 -57.24 11.76 21.65 0.25 -56.99 16 22 Si 0.96 46.08 29.56 68.60 2.03 48.10 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.07 -1.90 9.60 22.53 0.22 -1.68 16 27 C -0.11 -2.17 9.68 22.23 0.22 -1.95 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 30 H 0.06 1.20 6.18 -2.39 -0.01 1.18 16 31 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 1.11 8.00 -2.39 -0.02 1.09 16 35 H 0.06 0.69 8.06 -2.39 -0.02 0.67 16 36 H 0.14 2.33 8.04 -2.91 -0.02 2.31 16 37 H 0.13 3.14 6.41 -2.91 -0.02 3.12 16 38 H 0.41 13.06 6.51 -92.70 -0.60 12.45 16 39 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.08 2.72 8.10 -2.38 -0.02 2.70 16 42 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.03 1.44 7.69 -2.39 -0.02 1.42 16 44 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.13 3.48 7.65 -2.91 -0.02 3.46 16 47 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.20 385.34 -0.22 -71.42 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.35 Total: 24.09 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 7.01 Total: 11.35 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -9.54 Total: -130.43 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -71.20 -0.22 -71.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038821563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.909 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds