Wall clock time and date at job start Tue Mar 31 2020 11:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99792 * 2 1 4 4 C 1.46892 * 110.99973 * 123.95695 * 2 1 3 5 5 C 1.50696 * 109.47376 * 170.00352 * 4 2 1 6 6 C 1.38352 * 119.85650 * 89.99548 * 5 4 2 7 7 C 1.37966 * 120.14854 * 180.02562 * 6 5 4 8 8 C 1.39578 * 119.84562 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.13815 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00237 * 359.72752 * 9 8 7 11 11 N 1.34777 * 119.99810 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00268 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47556 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.74164 * 56.23597 * 13 12 11 15 15 C 1.53488 * 113.47150 * 187.05634 * 13 12 11 16 16 C 1.53496 * 83.34746 * 140.84343 * 15 13 12 17 17 N 1.47064 * 113.46665 * 285.49487 * 13 12 11 18 18 C 1.36942 * 136.05764 * 38.06351 * 17 13 12 19 19 H 1.07998 * 120.00206 * 359.97438 * 18 17 13 20 20 C 1.38809 * 120.00027 * 180.02562 * 18 17 13 21 21 N 1.31622 * 120.00329 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46910 * 59.99875 * 22 20 18 24 24 H 1.48497 * 109.47307 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47020 * 299.99892 * 22 20 18 26 26 C 1.39574 * 119.71866 * 0.27168 * 8 7 6 27 27 C 1.37965 * 119.84548 * 359.42991 * 26 8 7 28 28 H 1.08998 * 109.47207 * 296.04362 * 1 2 3 29 29 H 1.09003 * 109.47118 * 56.04880 * 1 2 3 30 30 H 1.09009 * 109.47401 * 176.04334 * 1 2 3 31 31 H 1.09000 * 109.46853 * 183.95416 * 3 2 1 32 32 H 1.09001 * 109.47275 * 303.95504 * 3 2 1 33 33 H 1.09000 * 109.46700 * 63.95630 * 3 2 1 34 34 H 1.08993 * 109.47443 * 49.99873 * 4 2 1 35 35 H 1.09010 * 109.47057 * 290.00151 * 4 2 1 36 36 H 1.08005 * 119.92960 * 0.02562 * 6 5 4 37 37 H 1.07999 * 120.07558 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46875 * 300.00170 * 12 11 9 40 40 H 1.08992 * 109.47170 * 59.99739 * 12 11 9 41 41 H 1.09000 * 114.21378 * 254.43285 * 15 13 12 42 42 H 1.09002 * 114.20658 * 27.26261 * 15 13 12 43 43 H 1.08995 * 113.47411 * 219.15029 * 16 15 13 44 44 H 1.09004 * 113.51667 * 88.72125 * 16 15 13 45 45 H 0.96998 * 120.00750 * 180.02562 * 21 20 18 46 46 H 1.07989 * 120.07782 * 179.70420 * 26 8 7 47 47 H 1.08001 * 119.92417 * 180.29006 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4817 -0.9525 0.9728 6 6 4.3555 -0.0158 1.4957 7 6 5.7173 -0.1802 1.3480 8 6 6.2128 -1.2944 0.6688 9 6 7.6710 -1.4774 0.5073 10 8 8.4409 -0.6540 0.9621 11 7 8.1464 -2.5546 -0.1485 12 6 9.5914 -2.7363 -0.3082 13 6 9.8605 -4.0271 -1.0840 14 1 9.3592 -4.0494 -2.0517 15 6 11.3482 -4.3980 -1.1563 16 6 10.8181 -5.8256 -0.9637 17 7 9.6490 -5.2446 -0.2867 18 6 8.7567 -5.6559 0.6672 19 1 7.9665 -4.9937 0.9888 20 6 8.8684 -6.9236 1.2214 21 7 9.8317 -7.7306 0.8299 22 14 7.6516 -7.4845 2.5231 23 1 6.2776 -7.4589 1.9600 24 1 7.9854 -8.8671 2.9498 25 1 7.7240 -6.5736 3.6936 26 6 5.3258 -2.2324 0.1384 27 6 3.9664 -2.0591 0.2986 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.5090 -1.7406 1.1755 35 1 1.7974 -0.2248 2.0628 36 1 3.9707 0.8461 2.0206 37 1 6.3983 0.5514 1.7569 38 1 7.5319 -3.2096 -0.5149 39 1 10.0056 -1.8901 -0.8565 40 1 10.0605 -2.7976 0.6737 41 1 11.8068 -4.2189 -2.1288 42 1 11.9427 -4.0258 -0.3219 43 1 11.4406 -6.4352 -0.3088 44 1 10.5725 -6.3283 -1.8993 45 1 9.9096 -8.6166 1.2169 46 1 5.7027 -3.0941 -0.3922 47 1 3.2791 -2.7866 -0.1073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038821564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:45 Heat of formation + Delta-G solvation = 55.219202 kcal Electronic energy + Delta-G solvation = -26170.323288 eV Core-core repulsion = 22548.090803 eV Total energy + Delta-G solvation = -3622.232485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15128 -38.92895 -38.05016 -36.98174 -34.13864 -32.28327 -31.96382 -31.03769 -28.32032 -27.91490 -27.88629 -26.73277 -23.49221 -23.44810 -22.69243 -21.97986 -21.30397 -20.08128 -19.25798 -17.89265 -16.60753 -16.17749 -15.94959 -15.80053 -15.41460 -15.29079 -14.87133 -14.54946 -14.45593 -14.32560 -13.89505 -13.56825 -13.48632 -13.13427 -12.89827 -12.69207 -12.58579 -12.34586 -12.04459 -11.95072 -11.77641 -11.52902 -11.43000 -11.12528 -11.04458 -10.96935 -10.77305 -10.59403 -10.02641 -9.85192 -9.68146 -9.22148 -9.03420 -8.95014 -8.82222 -8.67353 -8.49332 -6.91522 -5.78192 -3.11003 0.83508 1.35059 2.98590 3.37377 3.42501 3.43139 3.53541 3.68754 4.03319 4.42148 4.48172 4.63611 4.82895 4.86953 4.98126 4.98883 5.04448 5.15416 5.21192 5.26594 5.29427 5.36966 5.40300 5.50784 5.53812 5.57693 5.65080 5.69170 5.80404 5.91169 5.95510 6.09859 6.24369 6.31277 6.36945 6.40853 6.42792 6.59096 6.61726 6.66708 6.71344 6.82075 6.90404 7.21455 7.38430 7.56472 7.89800 7.96155 8.54520 9.01397 9.68819 10.61525 11.38923 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.003192 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.168895 B = 8769.377832 C =10003.966690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.018 3.982 4 C 0.091 3.909 5 C -0.062 4.062 6 C -0.125 4.125 7 C -0.062 4.062 8 C -0.126 4.126 9 C 0.552 3.448 10 O -0.550 6.550 11 N -0.707 5.707 12 C 0.121 3.879 13 C 0.127 3.873 14 H 0.049 0.951 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.602 5.602 18 C -0.215 4.215 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.284 1.284 26 C -0.083 4.083 27 C -0.105 4.105 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.402 0.598 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.025 0.975 45 H 0.254 0.746 46 H 0.130 0.870 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 15.049 -3.119 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.130 4.130 4 C -0.036 4.036 5 C -0.062 4.062 6 C -0.144 4.144 7 C -0.081 4.081 8 C -0.129 4.129 9 C 0.339 3.661 10 O -0.430 6.430 11 N -0.357 5.357 12 C -0.003 4.003 13 C 0.019 3.981 14 H 0.066 0.934 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.328 5.328 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.737 3.263 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.101 4.101 27 C -0.123 4.123 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.148 0.852 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.903 15.124 -2.985 20.759 hybrid contribution -1.322 -0.438 1.211 1.845 sum -15.224 14.686 -1.774 21.228 Atomic orbital electron populations 1.22403 0.87007 1.02455 1.00545 1.61977 1.07748 1.14197 1.42639 1.22502 1.01790 0.88358 1.00311 1.21115 0.91572 0.99168 0.91783 1.19838 0.94651 0.94685 0.97077 1.20967 0.92865 0.99228 1.01299 1.21205 0.95123 0.96246 0.95569 1.20070 0.93207 0.97226 1.02385 1.18262 0.87738 0.81725 0.78357 1.90726 1.58760 1.43826 1.49643 1.45908 1.09264 1.24279 1.56236 1.21839 0.79491 0.97656 1.01337 1.22424 0.94505 0.87455 0.93733 0.93422 1.23659 0.95151 1.00822 1.00351 1.22028 0.88290 0.92130 0.94969 1.45669 1.33599 1.11992 1.41501 1.18797 1.06370 0.97714 1.11377 0.90276 1.24765 0.98864 0.96492 1.00148 1.69813 1.33023 1.08413 1.45269 0.86275 0.80524 0.77817 0.81636 1.21140 1.21525 1.21070 1.21417 0.93299 0.97897 0.97532 1.20934 0.95006 0.97692 0.98676 0.95649 0.91200 0.91179 0.90606 0.91399 0.95635 0.89584 0.93702 0.85944 0.84765 0.76176 0.92133 0.90958 0.92304 0.90173 0.90980 0.95715 0.93609 0.85220 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.74 16 2 N -0.54 -4.77 5.01 -252.72 -1.27 -6.04 16 3 C 0.02 0.15 9.13 60.07 0.55 0.70 16 4 C 0.09 0.80 5.11 -4.98 -0.03 0.77 16 5 C -0.06 -0.67 4.89 -104.54 -0.51 -1.18 16 6 C -0.13 -1.38 7.94 -39.64 -0.31 -1.69 16 7 C -0.06 -0.84 9.60 -39.18 -0.38 -1.21 16 8 C -0.13 -1.90 5.87 -104.97 -0.62 -2.51 16 9 C 0.55 9.92 7.77 -12.33 -0.10 9.82 16 10 O -0.55 -11.39 16.35 5.32 0.09 -11.31 16 11 N -0.71 -12.44 5.28 -61.25 -0.32 -12.77 16 12 C 0.12 2.23 5.52 -4.04 -0.02 2.21 16 13 C 0.13 2.44 4.10 -72.40 -0.30 2.14 16 14 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 15 C -0.16 -2.93 8.03 -26.22 -0.21 -3.14 16 16 C 0.15 3.45 7.39 -8.51 -0.06 3.39 16 17 N -0.60 -14.62 3.65 -177.01 -0.65 -15.27 16 18 C -0.22 -5.76 10.55 -15.06 -0.16 -5.92 16 19 H 0.08 2.03 7.50 -52.49 -0.39 1.64 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -26.91 11.51 55.49 0.64 -26.27 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.08 -1.11 9.54 -39.18 -0.37 -1.48 16 27 C -0.10 -1.22 9.68 -39.64 -0.38 -1.61 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.12 -51.92 -0.42 0.01 16 31 H 0.08 0.68 6.16 -51.93 -0.32 0.36 16 32 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.69 8.00 -51.93 -0.42 0.28 16 35 H 0.04 0.36 8.06 -51.92 -0.42 -0.06 16 36 H 0.12 1.08 8.03 -52.48 -0.42 0.66 16 37 H 0.13 1.79 7.65 -52.49 -0.40 1.39 16 38 H 0.40 6.71 6.41 -40.82 -0.26 6.45 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.46 8.12 -51.93 -0.42 1.03 16 43 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.13 1.65 6.40 -52.49 -0.34 1.31 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -32.26 384.07 -10.71 -42.97 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.54 Total: 5.18 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.42 Total: 0.77 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -1.60 Total: -60.34 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.26 -10.71 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038821564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.186 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds