Wall clock time and date at job start Tue Mar 31 2020 11:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99792 * 2 1 4 4 C 1.46892 * 110.99973 * 123.95695 * 2 1 3 5 5 C 1.50696 * 109.47376 * 170.00352 * 4 2 1 6 6 C 1.38352 * 119.85650 * 89.99548 * 5 4 2 7 7 C 1.37966 * 120.14854 * 180.02562 * 6 5 4 8 8 C 1.39578 * 119.84562 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.13815 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00237 * 359.72752 * 9 8 7 11 11 N 1.34777 * 119.99810 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00268 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47556 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.74164 * 56.23597 * 13 12 11 15 15 C 1.53488 * 113.47150 * 187.05634 * 13 12 11 16 16 C 1.53496 * 83.34746 * 140.84343 * 15 13 12 17 17 N 1.47064 * 113.46665 * 285.49487 * 13 12 11 18 18 C 1.36942 * 136.05764 * 38.06351 * 17 13 12 19 19 H 1.07998 * 120.00206 * 359.97438 * 18 17 13 20 20 C 1.38809 * 120.00027 * 180.02562 * 18 17 13 21 21 N 1.31622 * 120.00329 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46910 * 59.99875 * 22 20 18 24 24 H 1.48497 * 109.47307 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47020 * 299.99892 * 22 20 18 26 26 C 1.39574 * 119.71866 * 0.27168 * 8 7 6 27 27 C 1.37965 * 119.84548 * 359.42991 * 26 8 7 28 28 H 1.08998 * 109.47207 * 296.04362 * 1 2 3 29 29 H 1.09003 * 109.47118 * 56.04880 * 1 2 3 30 30 H 1.09009 * 109.47401 * 176.04334 * 1 2 3 31 31 H 1.09000 * 109.46853 * 183.95416 * 3 2 1 32 32 H 1.09001 * 109.47275 * 303.95504 * 3 2 1 33 33 H 1.09000 * 109.46700 * 63.95630 * 3 2 1 34 34 H 1.08993 * 109.47443 * 49.99873 * 4 2 1 35 35 H 1.09010 * 109.47057 * 290.00151 * 4 2 1 36 36 H 1.08005 * 119.92960 * 0.02562 * 6 5 4 37 37 H 1.07999 * 120.07558 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46875 * 300.00170 * 12 11 9 40 40 H 1.08992 * 109.47170 * 59.99739 * 12 11 9 41 41 H 1.09000 * 114.21378 * 254.43285 * 15 13 12 42 42 H 1.09002 * 114.20658 * 27.26261 * 15 13 12 43 43 H 1.08995 * 113.47411 * 219.15029 * 16 15 13 44 44 H 1.09004 * 113.51667 * 88.72125 * 16 15 13 45 45 H 0.96998 * 120.00750 * 180.02562 * 21 20 18 46 46 H 1.07989 * 120.07782 * 179.70420 * 26 8 7 47 47 H 1.08001 * 119.92417 * 180.29006 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4817 -0.9525 0.9728 6 6 4.3555 -0.0158 1.4957 7 6 5.7173 -0.1802 1.3480 8 6 6.2128 -1.2944 0.6688 9 6 7.6710 -1.4774 0.5073 10 8 8.4409 -0.6540 0.9621 11 7 8.1464 -2.5546 -0.1485 12 6 9.5914 -2.7363 -0.3082 13 6 9.8605 -4.0271 -1.0840 14 1 9.3592 -4.0494 -2.0517 15 6 11.3482 -4.3980 -1.1563 16 6 10.8181 -5.8256 -0.9637 17 7 9.6490 -5.2446 -0.2867 18 6 8.7567 -5.6559 0.6672 19 1 7.9665 -4.9937 0.9888 20 6 8.8684 -6.9236 1.2214 21 7 9.8317 -7.7306 0.8299 22 14 7.6516 -7.4845 2.5231 23 1 6.2776 -7.4589 1.9600 24 1 7.9854 -8.8671 2.9498 25 1 7.7240 -6.5736 3.6936 26 6 5.3258 -2.2324 0.1384 27 6 3.9664 -2.0591 0.2986 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.5090 -1.7406 1.1755 35 1 1.7974 -0.2248 2.0628 36 1 3.9707 0.8461 2.0206 37 1 6.3983 0.5514 1.7569 38 1 7.5319 -3.2096 -0.5149 39 1 10.0056 -1.8901 -0.8565 40 1 10.0605 -2.7976 0.6737 41 1 11.8068 -4.2189 -2.1288 42 1 11.9427 -4.0258 -0.3219 43 1 11.4406 -6.4352 -0.3088 44 1 10.5725 -6.3283 -1.8993 45 1 9.9096 -8.6166 1.2169 46 1 5.7027 -3.0941 -0.3922 47 1 3.2791 -2.7866 -0.1073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038821564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:44 Heat of formation + Delta-G solvation = 34.073091 kcal Electronic energy + Delta-G solvation = -26171.240252 eV Core-core repulsion = 22548.090803 eV Total energy + Delta-G solvation = -3623.149449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33752 -40.19383 -39.51850 -37.78359 -35.63085 -34.25717 -32.95683 -32.01124 -29.99579 -29.45635 -28.46532 -27.74246 -25.39351 -24.51801 -23.71686 -23.25208 -22.27014 -21.35298 -20.91485 -19.27190 -18.33528 -17.37001 -17.10190 -16.82518 -16.44531 -16.31602 -16.20899 -16.03286 -15.69560 -15.36502 -15.31462 -14.90063 -14.73734 -14.48139 -14.12129 -13.74157 -13.46040 -13.27653 -13.21676 -13.07400 -12.94543 -12.71119 -12.67640 -12.59657 -12.47261 -12.34756 -12.22809 -11.95878 -11.85695 -11.64590 -11.28454 -10.88349 -10.79803 -10.16306 -9.96495 -9.78889 -9.27874 -8.89218 -7.87208 -5.19054 -0.20792 0.39511 1.43679 1.46524 1.51872 1.79662 2.17910 2.47602 2.76653 3.23067 3.34580 3.42848 3.62614 3.77023 3.84922 3.94014 4.00277 4.12637 4.21471 4.30127 4.33599 4.39435 4.46283 4.57639 4.60599 4.62930 4.68373 4.74096 4.77801 4.85869 4.88285 5.03357 5.05407 5.05591 5.06038 5.08672 5.28532 5.32639 5.34421 5.43315 5.52507 5.59113 5.74238 5.87878 5.97488 6.02765 6.08998 6.51044 6.94039 7.15485 7.64385 8.64071 9.30233 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.003192 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.168895 B = 8769.377832 C =10003.966690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.558 5.558 3 C 0.018 3.982 4 C 0.092 3.908 5 C -0.053 4.053 6 C -0.117 4.117 7 C -0.071 4.071 8 C -0.151 4.151 9 C 0.550 3.450 10 O -0.585 6.585 11 N -0.706 5.706 12 C 0.129 3.871 13 C 0.133 3.867 14 H 0.070 0.930 15 C -0.134 4.134 16 C 0.143 3.857 17 N -0.630 5.630 18 C -0.209 4.209 19 H 0.085 0.915 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.297 1.297 25 H -0.285 1.285 26 C -0.088 4.088 27 C -0.108 4.108 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.024 0.976 45 H 0.246 0.754 46 H 0.131 0.869 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.860 16.525 -3.636 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.130 4.130 4 C -0.035 4.035 5 C -0.054 4.054 6 C -0.136 4.136 7 C -0.090 4.090 8 C -0.154 4.154 9 C 0.339 3.661 10 O -0.468 6.468 11 N -0.356 5.356 12 C 0.004 3.996 13 C 0.027 3.973 14 H 0.088 0.912 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.356 5.356 18 C -0.337 4.337 19 H 0.103 0.897 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.223 1.223 25 H -0.212 1.212 26 C -0.107 4.107 27 C -0.126 4.126 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.146 0.854 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.149 0.851 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.314 16.627 -3.531 23.560 hybrid contribution -0.638 -0.802 1.322 1.673 sum -16.952 15.826 -2.209 23.296 Atomic orbital electron populations 1.22438 0.85695 1.03023 1.01184 1.61967 1.09019 1.14546 1.42642 1.22500 1.01011 0.88316 1.01158 1.21140 0.89902 1.00055 0.92409 1.20155 0.96030 0.93780 0.95390 1.21197 0.91734 0.99933 1.00707 1.21279 0.96267 0.95777 0.95703 1.19944 0.91570 0.98988 1.04873 1.18736 0.88957 0.81032 0.77401 1.90693 1.59955 1.44980 1.51156 1.45890 1.08968 1.24436 1.56282 1.21656 0.80085 0.97965 0.99849 1.22569 0.95312 0.85812 0.93636 0.91235 1.23484 0.94690 0.96546 1.02571 1.22047 0.87975 0.94296 0.93937 1.45991 1.33563 1.14145 1.41887 1.19148 1.06053 0.97399 1.11100 0.89714 1.25517 1.00848 0.97130 1.02688 1.69997 1.34988 1.08376 1.46951 0.85335 0.79218 0.76674 0.79298 1.19697 1.22293 1.21179 1.21477 0.93953 0.97617 0.97606 1.21187 0.94467 0.98420 0.98522 0.94925 0.90642 0.90688 0.91832 0.90768 0.94655 0.88597 0.92566 0.83463 0.85372 0.75643 0.90111 0.93900 0.88086 0.90284 0.94577 0.95819 0.94534 0.85092 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 127.69 1.22 1.48 16 2 N -0.56 -8.20 5.01 -953.47 -4.78 -12.98 16 3 C 0.02 0.24 9.13 127.69 1.17 1.41 16 4 C 0.09 1.33 5.11 85.56 0.44 1.77 16 5 C -0.05 -1.01 4.89 -19.81 -0.10 -1.11 16 6 C -0.12 -2.35 7.94 22.23 0.18 -2.18 16 7 C -0.07 -1.87 9.60 22.53 0.22 -1.65 16 8 C -0.15 -4.50 5.87 -20.09 -0.12 -4.62 16 9 C 0.55 19.85 7.77 86.79 0.67 20.53 16 10 O -0.59 -24.66 16.35 -3.88 -0.06 -24.73 16 11 N -0.71 -24.59 5.28 -465.98 -2.46 -27.05 16 12 C 0.13 4.66 5.52 86.38 0.48 5.14 16 13 C 0.13 4.93 4.10 41.79 0.17 5.10 16 14 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 15 C -0.13 -4.64 8.03 30.93 0.25 -4.40 16 16 C 0.14 6.56 7.39 83.18 0.61 7.17 16 17 N -0.63 -30.60 3.65 -713.94 -2.61 -33.21 16 18 C -0.21 -11.22 10.55 84.03 0.89 -10.34 16 19 H 0.09 4.34 7.50 -2.91 -0.02 4.32 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.95 -57.49 11.51 21.65 0.25 -57.24 16 22 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 C -0.09 -2.26 9.54 22.53 0.21 -2.04 16 27 C -0.11 -2.29 9.68 22.23 0.22 -2.08 16 28 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 30 H 0.07 0.71 8.12 -2.38 -0.02 0.69 16 31 H 0.06 1.00 6.16 -2.39 -0.01 0.99 16 32 H 0.07 0.88 8.12 -2.39 -0.02 0.87 16 33 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.10 1.22 8.00 -2.39 -0.02 1.20 16 35 H 0.06 0.70 8.06 -2.38 -0.02 0.69 16 36 H 0.15 2.18 8.03 -2.91 -0.02 2.15 16 37 H 0.13 3.44 7.65 -2.91 -0.02 3.42 16 38 H 0.41 13.32 6.41 -92.71 -0.59 12.73 16 39 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.08 2.77 8.12 -2.39 -0.02 2.75 16 43 H 0.04 1.90 7.12 -2.39 -0.02 1.88 16 44 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.13 3.23 6.40 -2.92 -0.02 3.21 16 47 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -70.98 384.07 -0.30 -71.28 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.36 Total: 25.40 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 6.97 Total: 10.75 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -9.60 Total: -130.48 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.73 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.98 -0.30 -71.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038821564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.353 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds