Wall clock time and date at job start Tue Mar 31 2020 11:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 111.00178 * 2 1 4 4 C 1.46901 * 111.00654 * 123.95674 * 2 1 3 5 5 C 1.50694 * 109.47598 * 169.99777 * 4 2 1 6 6 C 1.38387 * 119.92512 * 269.97918 * 5 4 2 7 7 C 1.38341 * 120.28753 * 179.97438 * 6 5 4 8 8 C 1.37977 * 120.14531 * 359.74153 * 7 6 5 9 9 C 1.39553 * 119.85679 * 0.53160 * 8 7 6 10 10 C 1.47840 * 120.14968 * 179.74542 * 9 8 7 11 11 O 1.21553 * 120.00437 * 179.72369 * 10 9 8 12 12 N 1.34781 * 119.99719 * 359.72421 * 10 9 8 13 13 C 1.46494 * 120.00039 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.77423 * 303.71501 * 14 13 12 16 16 C 1.53503 * 113.46827 * 172.93855 * 14 13 12 17 17 C 1.53492 * 83.34380 * 219.14824 * 16 14 13 18 18 N 1.47066 * 87.98733 * 26.06826 * 17 16 14 19 19 C 1.36937 * 136.06113 * 152.61725 * 18 17 16 20 20 H 1.07998 * 120.00254 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99951 * 0.02562 * 19 18 17 22 22 N 1.31625 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47066 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47477 * 119.99351 * 23 21 19 26 26 H 1.48503 * 109.47255 * 239.99979 * 23 21 19 27 27 C 1.37934 * 119.92741 * 89.99685 * 5 4 2 28 28 H 1.09008 * 109.46661 * 296.04698 * 1 2 3 29 29 H 1.08994 * 109.47492 * 56.04149 * 1 2 3 30 30 H 1.08994 * 109.47228 * 176.05224 * 1 2 3 31 31 H 1.09000 * 109.46705 * 183.95755 * 3 2 1 32 32 H 1.08999 * 109.46830 * 303.95175 * 3 2 1 33 33 H 1.08995 * 109.47034 * 63.95707 * 3 2 1 34 34 H 1.09000 * 109.46922 * 49.99534 * 4 2 1 35 35 H 1.08998 * 109.46856 * 289.99812 * 4 2 1 36 36 H 1.07998 * 119.85444 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.92306 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.07087 * 180.25179 * 8 7 6 39 39 H 0.96997 * 119.99903 * 359.97438 * 12 10 9 40 40 H 1.08997 * 109.47637 * 60.00092 * 13 12 10 41 41 H 1.09004 * 109.47176 * 299.99546 * 13 12 10 42 42 H 1.08996 * 114.20600 * 105.56117 * 16 14 13 43 43 H 1.08998 * 114.38368 * 332.75224 * 16 14 13 44 44 H 1.09001 * 113.47148 * 271.28940 * 17 16 14 45 45 H 1.08997 * 113.46749 * 140.84707 * 17 16 14 46 46 H 0.97005 * 120.00072 * 180.02562 * 22 21 19 47 47 H 1.07993 * 120.07558 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9727 6 6 3.9682 -2.0596 0.2998 7 6 5.3312 -2.2380 0.1437 8 6 6.2145 -1.3091 0.6541 9 6 5.7308 -0.1934 1.3388 10 6 6.6718 0.8030 1.8932 11 8 6.2474 1.7764 2.4847 12 7 8.0002 0.6321 1.7428 13 6 8.9326 1.6191 2.2927 14 6 10.3689 1.1907 1.9851 15 1 10.6004 0.1927 2.3574 16 6 11.4168 2.2446 2.3690 17 6 12.0835 1.7995 1.0601 18 7 10.7532 1.3957 0.5804 19 6 10.1401 1.2712 -0.6377 20 1 9.1138 0.9398 -0.6944 21 6 10.8381 1.5699 -1.7997 22 7 12.0892 1.9732 -1.7307 23 14 10.0022 1.3994 -3.4615 24 1 8.6060 0.9320 -3.2676 25 1 9.9929 2.7160 -4.1484 26 1 10.7430 0.4142 -4.2896 27 6 4.3543 -0.0196 1.4932 28 1 -0.3633 0.4513 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0707 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7045 1.8723 0.9233 34 1 1.5090 -1.7407 1.1756 35 1 1.7977 -0.2248 2.0627 36 1 3.2808 -2.7870 -0.1060 37 1 5.7044 -3.1044 -0.3822 38 1 7.2782 -1.4475 0.5280 39 1 8.3389 -0.1449 1.2711 40 1 8.7964 1.6859 3.3721 41 1 8.7396 2.5923 1.8412 42 1 11.9867 2.0022 3.2659 43 1 11.0486 3.2705 2.3568 44 1 12.7717 0.9636 1.1858 45 1 12.5181 2.6223 0.4926 46 1 12.5769 2.1823 -2.5428 47 1 3.9735 0.8440 2.0180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039040144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:49 Heat of formation + Delta-G solvation = 55.002557 kcal Electronic energy + Delta-G solvation = -26405.069846 eV Core-core repulsion = 22782.827967 eV Total energy + Delta-G solvation = -3622.241879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17333 -38.87082 -38.01001 -36.99723 -34.15433 -32.28963 -31.91885 -31.15056 -28.15742 -27.85972 -27.63516 -26.79373 -23.83222 -23.49030 -22.68535 -21.75388 -21.44743 -19.93562 -19.19274 -17.68229 -16.64568 -16.13183 -15.96808 -15.72535 -15.37823 -15.32872 -15.25753 -14.55189 -14.42529 -14.23232 -13.88809 -13.67513 -13.32297 -13.07833 -12.76610 -12.60052 -12.52498 -12.24220 -11.94949 -11.87579 -11.76950 -11.54926 -11.51778 -11.13890 -11.04645 -10.98333 -10.78997 -10.56641 -10.01619 -9.83949 -9.69270 -9.23486 -8.99601 -8.96508 -8.83617 -8.57168 -8.52813 -6.92086 -5.78968 -3.11798 0.90421 1.26854 3.01854 3.36911 3.43203 3.45104 3.50059 3.73380 4.06287 4.41617 4.52743 4.70760 4.82734 4.92261 5.03413 5.06389 5.11584 5.19420 5.25521 5.26437 5.38220 5.39052 5.45793 5.51073 5.55853 5.56436 5.68437 5.81177 5.84832 5.89849 5.91894 6.08621 6.28502 6.31905 6.34330 6.39701 6.43034 6.58212 6.69893 6.70845 6.74330 6.82678 6.89427 7.20869 7.37430 7.56177 7.88227 7.95530 8.52915 9.00817 9.68214 10.60569 11.38163 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003398 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.910126 B = 8237.009813 C = 9224.820799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.018 3.982 4 C 0.095 3.905 5 C -0.094 4.094 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.082 4.082 9 C -0.128 4.128 10 C 0.553 3.447 11 O -0.550 6.550 12 N -0.707 5.707 13 C 0.121 3.879 14 C 0.127 3.873 15 H 0.049 0.951 16 C -0.161 4.161 17 C 0.151 3.849 18 N -0.602 5.602 19 C -0.214 4.214 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.907 3.093 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C -0.056 4.056 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.253 0.747 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.200 -7.630 7.131 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.130 4.130 4 C -0.032 4.032 5 C -0.094 4.094 6 C -0.096 4.096 7 C -0.145 4.145 8 C -0.101 4.101 9 C -0.131 4.131 10 C 0.340 3.660 11 O -0.430 6.430 12 N -0.357 5.357 13 C -0.003 4.003 14 C 0.019 3.981 15 H 0.066 0.934 16 C -0.200 4.200 17 C 0.025 3.975 18 N -0.328 5.328 19 C -0.341 4.341 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.737 3.263 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.075 4.075 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.348 -7.131 6.740 19.931 hybrid contribution -0.350 -0.156 -0.605 0.717 sum -17.699 -7.287 6.135 20.100 Atomic orbital electron populations 1.22390 0.87158 1.02215 1.00617 1.62002 1.07629 1.14453 1.42580 1.22507 1.01916 0.88131 1.00480 1.21045 0.91286 0.98933 0.91941 1.19609 0.94712 0.95412 0.99681 1.21151 0.95349 0.96867 0.96235 1.21103 0.93146 0.99658 1.00555 1.21431 1.00317 0.93013 0.95298 1.20008 0.94125 0.96509 1.02466 1.18246 0.82554 0.85453 0.79760 1.90724 1.78091 1.30928 1.43259 1.45900 1.05381 1.27237 1.57151 1.21838 0.88735 0.92501 0.97233 1.22425 0.91224 0.96630 0.87817 0.93418 1.23660 0.98651 0.98912 0.98772 1.22033 0.88815 0.97505 0.89101 1.45669 1.09899 1.78109 0.99103 1.18891 0.95149 1.39059 0.81033 0.90157 1.24768 0.96121 1.01898 0.97538 1.69840 1.08994 1.50747 1.26880 0.86124 0.78473 0.77444 0.84245 1.20383 1.21669 1.21732 1.21112 0.91562 0.97957 0.96899 0.95643 0.91217 0.91347 0.90569 0.91308 0.95415 0.89786 0.93712 0.85711 0.85320 0.85316 0.76182 0.92146 0.90957 0.92340 0.90181 0.95712 0.90935 0.93722 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 60.06 0.57 0.76 16 2 N -0.54 -5.50 5.01 -252.73 -1.27 -6.77 16 3 C 0.02 0.19 9.13 60.07 0.55 0.74 16 4 C 0.10 0.91 5.11 -4.98 -0.03 0.88 16 5 C -0.09 -1.08 4.88 -104.68 -0.51 -1.59 16 6 C -0.08 -0.83 9.69 -39.49 -0.38 -1.21 16 7 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 8 C -0.08 -1.08 9.54 -39.19 -0.37 -1.46 16 9 C -0.13 -1.94 5.87 -104.97 -0.62 -2.55 16 10 C 0.55 9.89 7.77 -12.33 -0.10 9.80 16 11 O -0.55 -11.34 16.35 5.32 0.09 -11.25 16 12 N -0.71 -12.38 5.28 -61.25 -0.32 -12.70 16 13 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 14 C 0.13 2.43 4.10 -72.39 -0.30 2.13 16 15 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 16 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 17 C 0.15 3.44 7.40 -8.51 -0.06 3.37 16 18 N -0.60 -14.57 3.65 -177.00 -0.65 -15.22 16 19 C -0.21 -5.71 10.55 -15.06 -0.16 -5.87 16 20 H 0.08 2.07 7.51 -52.49 -0.39 1.67 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.86 11.50 55.49 0.64 -26.23 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.06 -0.76 7.50 -39.18 -0.29 -1.06 16 28 H 0.02 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 31 H 0.08 0.96 6.16 -51.93 -0.32 0.64 16 32 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.66 8.01 -51.93 -0.42 0.24 16 35 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.62 6.41 -52.48 -0.34 1.29 16 39 H 0.40 6.67 6.41 -40.82 -0.26 6.41 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.85 7.11 -51.93 -0.37 1.48 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -32.24 384.08 -10.71 -42.95 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.54 Total: 5.51 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.42 Total: 0.91 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -1.60 Total: -60.91 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.24 -10.71 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039040144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.954 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds