Wall clock time and date at job start Tue Mar 31 2020 11:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 111.00178 * 2 1 4 4 C 1.46901 * 111.00654 * 123.95674 * 2 1 3 5 5 C 1.50694 * 109.47598 * 169.99777 * 4 2 1 6 6 C 1.38387 * 119.92512 * 269.97918 * 5 4 2 7 7 C 1.38341 * 120.28753 * 179.97438 * 6 5 4 8 8 C 1.37977 * 120.14531 * 359.74153 * 7 6 5 9 9 C 1.39553 * 119.85679 * 0.53160 * 8 7 6 10 10 C 1.47840 * 120.14968 * 179.74542 * 9 8 7 11 11 O 1.21553 * 120.00437 * 179.72369 * 10 9 8 12 12 N 1.34781 * 119.99719 * 359.72421 * 10 9 8 13 13 C 1.46494 * 120.00039 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.77423 * 303.71501 * 14 13 12 16 16 C 1.53503 * 113.46827 * 172.93855 * 14 13 12 17 17 C 1.53492 * 83.34380 * 219.14824 * 16 14 13 18 18 N 1.47066 * 87.98733 * 26.06826 * 17 16 14 19 19 C 1.36937 * 136.06113 * 152.61725 * 18 17 16 20 20 H 1.07998 * 120.00254 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99951 * 0.02562 * 19 18 17 22 22 N 1.31625 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47066 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47477 * 119.99351 * 23 21 19 26 26 H 1.48503 * 109.47255 * 239.99979 * 23 21 19 27 27 C 1.37934 * 119.92741 * 89.99685 * 5 4 2 28 28 H 1.09008 * 109.46661 * 296.04698 * 1 2 3 29 29 H 1.08994 * 109.47492 * 56.04149 * 1 2 3 30 30 H 1.08994 * 109.47228 * 176.05224 * 1 2 3 31 31 H 1.09000 * 109.46705 * 183.95755 * 3 2 1 32 32 H 1.08999 * 109.46830 * 303.95175 * 3 2 1 33 33 H 1.08995 * 109.47034 * 63.95707 * 3 2 1 34 34 H 1.09000 * 109.46922 * 49.99534 * 4 2 1 35 35 H 1.08998 * 109.46856 * 289.99812 * 4 2 1 36 36 H 1.07998 * 119.85444 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.92306 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.07087 * 180.25179 * 8 7 6 39 39 H 0.96997 * 119.99903 * 359.97438 * 12 10 9 40 40 H 1.08997 * 109.47637 * 60.00092 * 13 12 10 41 41 H 1.09004 * 109.47176 * 299.99546 * 13 12 10 42 42 H 1.08996 * 114.20600 * 105.56117 * 16 14 13 43 43 H 1.08998 * 114.38368 * 332.75224 * 16 14 13 44 44 H 1.09001 * 113.47148 * 271.28940 * 17 16 14 45 45 H 1.08997 * 113.46749 * 140.84707 * 17 16 14 46 46 H 0.97005 * 120.00072 * 180.02562 * 22 21 19 47 47 H 1.07993 * 120.07558 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9727 6 6 3.9682 -2.0596 0.2998 7 6 5.3312 -2.2380 0.1437 8 6 6.2145 -1.3091 0.6541 9 6 5.7308 -0.1934 1.3388 10 6 6.6718 0.8030 1.8932 11 8 6.2474 1.7764 2.4847 12 7 8.0002 0.6321 1.7428 13 6 8.9326 1.6191 2.2927 14 6 10.3689 1.1907 1.9851 15 1 10.6004 0.1927 2.3574 16 6 11.4168 2.2446 2.3690 17 6 12.0835 1.7995 1.0601 18 7 10.7532 1.3957 0.5804 19 6 10.1401 1.2712 -0.6377 20 1 9.1138 0.9398 -0.6944 21 6 10.8381 1.5699 -1.7997 22 7 12.0892 1.9732 -1.7307 23 14 10.0022 1.3994 -3.4615 24 1 8.6060 0.9320 -3.2676 25 1 9.9929 2.7160 -4.1484 26 1 10.7430 0.4142 -4.2896 27 6 4.3543 -0.0196 1.4932 28 1 -0.3633 0.4513 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0707 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7045 1.8723 0.9233 34 1 1.5090 -1.7407 1.1756 35 1 1.7977 -0.2248 2.0627 36 1 3.2808 -2.7870 -0.1060 37 1 5.7044 -3.1044 -0.3822 38 1 7.2782 -1.4475 0.5280 39 1 8.3389 -0.1449 1.2711 40 1 8.7964 1.6859 3.3721 41 1 8.7396 2.5923 1.8412 42 1 11.9867 2.0022 3.2659 43 1 11.0486 3.2705 2.3568 44 1 12.7717 0.9636 1.1858 45 1 12.5181 2.6223 0.4926 46 1 12.5769 2.1823 -2.5428 47 1 3.9735 0.8440 2.0180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039040144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:48 Heat of formation + Delta-G solvation = 33.729196 kcal Electronic energy + Delta-G solvation = -26405.992328 eV Core-core repulsion = 22782.827967 eV Total energy + Delta-G solvation = -3623.164361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36270 -40.18611 -39.47548 -37.85410 -35.64088 -34.26504 -32.91709 -32.14570 -29.98406 -29.27303 -28.49507 -27.65203 -25.40541 -25.04141 -23.64710 -23.11568 -22.42036 -21.31744 -20.80074 -19.01731 -18.30744 -17.37191 -17.11926 -16.99967 -16.49585 -16.33515 -16.27997 -16.13988 -15.73606 -15.42194 -15.33368 -14.91853 -14.76233 -14.58690 -13.75638 -13.73696 -13.46999 -13.28506 -13.23675 -13.02600 -12.99364 -12.73899 -12.71549 -12.59874 -12.52713 -12.38844 -12.30584 -11.94017 -11.85930 -11.63071 -11.29174 -10.90314 -10.81059 -10.18712 -9.91301 -9.80907 -9.33001 -8.89709 -7.88171 -5.19824 -0.14246 0.32484 1.42815 1.44759 1.53151 1.82233 2.16007 2.46502 2.75296 3.21259 3.34053 3.41895 3.67243 3.69303 3.88675 3.92697 4.07389 4.12039 4.21361 4.28641 4.32649 4.34750 4.41131 4.53924 4.57507 4.61994 4.67278 4.71904 4.75444 4.85226 4.88203 4.98372 5.00883 5.03070 5.05155 5.08018 5.29969 5.32152 5.40099 5.42362 5.52061 5.58769 5.73522 5.89852 5.96457 5.96903 6.06882 6.49847 6.93655 7.14224 7.63598 8.63127 9.29524 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003398 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.910126 B = 8237.009813 C = 9224.820799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.020 3.980 4 C 0.096 3.904 5 C -0.092 4.092 6 C -0.068 4.068 7 C -0.124 4.124 8 C -0.090 4.090 9 C -0.153 4.153 10 C 0.550 3.450 11 O -0.587 6.587 12 N -0.705 5.705 13 C 0.129 3.871 14 C 0.134 3.866 15 H 0.072 0.928 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.630 5.630 19 C -0.206 4.206 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.299 1.299 26 H -0.291 1.291 27 C -0.064 4.064 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.407 0.593 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.036 0.964 46 H 0.245 0.755 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.311 -9.870 7.535 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.128 4.128 4 C -0.031 4.031 5 C -0.093 4.093 6 C -0.087 4.087 7 C -0.142 4.142 8 C -0.109 4.109 9 C -0.156 4.156 10 C 0.339 3.661 11 O -0.469 6.469 12 N -0.355 5.355 13 C 0.005 3.995 14 C 0.027 3.973 15 H 0.089 0.911 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.356 5.356 19 C -0.334 4.334 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.794 3.206 24 H -0.191 1.191 25 H -0.226 1.226 26 H -0.218 1.218 27 C -0.084 4.084 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.149 0.851 39 H 0.244 0.756 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.480 -9.399 7.173 22.787 hybrid contribution 0.236 0.503 -0.668 0.870 sum -19.243 -8.896 6.504 22.175 Atomic orbital electron populations 1.22454 0.85472 1.03397 1.01025 1.62012 1.09182 1.13780 1.42815 1.22432 1.00448 0.89072 1.00858 1.21109 0.90063 1.00135 0.91795 1.19852 0.95582 0.94974 0.98890 1.21548 0.95704 0.96683 0.94716 1.21446 0.93194 0.99770 0.99785 1.21540 1.00946 0.92952 0.95435 1.19886 0.94093 0.97040 1.04570 1.18729 0.82824 0.85506 0.79045 1.90691 1.78613 1.32574 1.45020 1.45875 1.05380 1.27125 1.57135 1.21654 0.88478 0.91253 0.98145 1.22573 0.91866 0.97961 0.84873 0.91118 1.23485 0.97367 0.98520 0.97959 1.22052 0.88580 0.96467 0.91187 1.45985 1.10914 1.78355 1.00338 1.19211 0.95318 1.36630 0.82230 0.89704 1.25500 0.96878 1.03132 1.00688 1.70013 1.10333 1.52982 1.26938 0.85195 0.78099 0.76698 0.80566 1.19105 1.22638 1.21758 1.21104 0.91452 0.98329 0.97514 0.95226 0.90842 0.89768 0.92967 0.90634 0.95338 0.87307 0.93820 0.82590 0.82558 0.85113 0.75614 0.90122 0.93977 0.88099 0.90336 0.95745 0.94560 0.94560 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 127.69 1.22 1.53 16 2 N -0.55 -10.07 5.01 -953.50 -4.78 -14.84 16 3 C 0.02 0.42 9.13 127.69 1.17 1.59 16 4 C 0.10 1.61 5.11 85.55 0.44 2.05 16 5 C -0.09 -1.96 4.88 -19.90 -0.10 -2.05 16 6 C -0.07 -1.23 9.69 22.33 0.22 -1.02 16 7 C -0.12 -2.45 10.03 22.23 0.22 -2.22 16 8 C -0.09 -2.27 9.54 22.53 0.21 -2.05 16 9 C -0.15 -4.61 5.87 -20.09 -0.12 -4.73 16 10 C 0.55 19.97 7.77 86.78 0.67 20.65 16 11 O -0.59 -24.89 16.35 -3.88 -0.06 -24.95 16 12 N -0.71 -24.54 5.28 -465.98 -2.46 -27.00 16 13 C 0.13 4.66 5.52 86.38 0.48 5.14 16 14 C 0.13 4.92 4.10 41.79 0.17 5.09 16 15 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 16 C -0.13 -4.64 8.03 30.93 0.25 -4.39 16 17 C 0.14 6.52 7.40 83.18 0.62 7.13 16 18 N -0.63 -30.50 3.65 -713.90 -2.61 -33.11 16 19 C -0.21 -11.04 10.55 84.03 0.89 -10.15 16 20 H 0.09 4.36 7.51 -2.91 -0.02 4.34 16 21 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 22 N -0.95 -57.42 11.50 21.65 0.25 -57.17 16 23 Si 0.96 46.00 29.55 68.60 2.03 48.03 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C -0.06 -1.75 7.50 22.53 0.17 -1.59 16 28 H 0.03 0.35 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.05 1.33 6.16 -2.39 -0.01 1.31 16 32 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 33 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 1.29 8.01 -2.39 -0.02 1.27 16 35 H 0.04 0.75 8.06 -2.39 -0.02 0.73 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.13 3.15 6.41 -2.91 -0.02 3.13 16 39 H 0.41 13.25 6.41 -92.71 -0.59 12.66 16 40 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 44 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.04 1.91 7.11 -2.39 -0.02 1.89 16 46 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 47 H 0.12 3.42 7.62 -2.91 -0.02 3.40 16 Total: -1.00 -71.81 384.08 -0.30 -72.11 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.36 Total: 25.43 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.97 Total: 11.51 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -9.60 Total: -132.12 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.95 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -71.81 -0.30 -72.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039040144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.837 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds