Wall clock time and date at job start Tue Mar 31 2020 11:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99987 * 2 1 4 4 C 1.46904 * 111.00208 * 123.95514 * 2 1 3 5 5 C 1.50697 * 109.46751 * 66.04801 * 4 2 1 6 6 C 1.37979 * 120.07050 * 260.01748 * 5 4 2 7 7 C 1.38342 * 120.14311 * 179.97438 * 6 5 4 8 8 C 1.38386 * 120.29341 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.14392 * 359.97438 * 8 7 6 10 10 C 1.39558 * 120.07470 * 80.00535 * 5 4 2 11 11 C 1.47843 * 120.14449 * 359.73627 * 10 5 4 12 12 O 1.21549 * 119.99940 * 0.02562 * 11 10 5 13 13 N 1.34774 * 119.99980 * 180.02562 * 11 10 5 14 14 C 1.46505 * 120.00216 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47146 * 180.02562 * 14 13 11 16 16 H 1.09006 * 112.74084 * 56.24288 * 15 14 13 17 17 C 1.53496 * 113.46547 * 187.05704 * 15 14 13 18 18 C 1.53494 * 83.34383 * 140.84979 * 17 15 14 19 19 N 1.47060 * 113.46789 * 285.49222 * 15 14 13 20 20 C 1.36937 * 136.05842 * 38.06940 * 19 15 14 21 21 H 1.08005 * 119.99847 * 353.56224 * 20 19 15 22 22 C 1.38815 * 120.00290 * 173.56302 * 20 19 15 23 23 N 1.31614 * 119.99658 * 5.05248 * 22 20 19 24 24 Si 1.86803 * 120.00141 * 185.05646 * 22 20 19 25 25 H 1.48502 * 109.46998 * 94.98528 * 24 22 20 26 26 H 1.48500 * 109.47016 * 214.98635 * 24 22 20 27 27 H 1.48502 * 109.46860 * 334.98445 * 24 22 20 28 28 H 1.08994 * 109.46805 * 296.04481 * 1 2 3 29 29 H 1.08995 * 109.47080 * 56.04724 * 1 2 3 30 30 H 1.08999 * 109.46302 * 176.04547 * 1 2 3 31 31 H 1.09001 * 109.47502 * 183.95384 * 3 2 1 32 32 H 1.09000 * 109.47492 * 303.95402 * 3 2 1 33 33 H 1.08996 * 109.47401 * 63.95457 * 3 2 1 34 34 H 1.08999 * 109.47028 * 306.04343 * 4 2 1 35 35 H 1.09003 * 109.46736 * 186.04800 * 4 2 1 36 36 H 1.07999 * 119.92813 * 359.96001 * 6 5 4 37 37 H 1.08002 * 119.85492 * 180.02562 * 7 6 5 38 38 H 1.07992 * 119.92428 * 180.02562 * 8 7 6 39 39 H 1.07995 * 120.07341 * 180.02562 * 9 8 7 40 40 H 0.96997 * 120.00029 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.46668 * 300.00482 * 14 13 11 42 42 H 1.08994 * 109.47268 * 59.99839 * 14 13 11 43 43 H 1.08999 * 114.20483 * 254.43729 * 17 15 14 44 44 H 1.08998 * 114.20646 * 27.26387 * 17 15 14 45 45 H 1.08999 * 113.46918 * 219.15375 * 18 17 15 46 46 H 1.09004 * 113.47020 * 88.71138 * 18 17 15 47 47 H 0.96999 * 120.00017 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9727 6 6 0.5653 -2.7506 1.6613 7 6 0.2346 -4.0855 1.5106 8 6 0.9753 -4.8976 0.6700 9 6 2.0491 -4.3800 -0.0241 10 6 2.3881 -3.0339 0.1231 11 6 3.5340 -2.4710 -0.6224 12 8 3.8240 -1.2974 -0.4957 13 7 4.2570 -3.2591 -1.4425 14 6 5.3929 -2.7015 -2.1809 15 6 6.0357 -3.7982 -3.0322 16 1 5.3283 -4.2727 -3.7124 17 6 7.3392 -3.3584 -3.7130 18 6 7.7948 -4.7806 -3.3585 19 7 6.8291 -4.7577 -2.2495 20 6 6.7181 -5.3628 -1.0261 21 1 5.9260 -5.0744 -0.3509 22 6 7.6236 -6.3469 -0.6537 23 7 8.6464 -6.6286 -1.4326 24 14 7.3903 -7.2712 0.9527 25 1 6.6608 -8.5384 0.6932 26 1 8.7173 -7.5764 1.5454 27 1 6.6074 -6.4336 1.8965 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3632 -1.0253 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 -0.0164 -2.1223 2.3194 37 1 -0.6055 -4.4956 2.0515 38 1 0.7116 -5.9387 0.5565 39 1 2.6262 -5.0148 -0.6802 40 1 4.0253 -4.1955 -1.5439 41 1 5.0453 -1.8963 -2.8282 42 1 6.1272 -2.3102 -1.4768 43 1 7.2441 -3.1732 -4.7830 44 1 7.8767 -2.5719 -3.1834 45 1 8.8325 -4.8347 -3.0294 46 1 7.5566 -5.5169 -4.1263 47 1 9.2794 -7.3160 -1.1722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039052403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:00 Heat of formation + Delta-G solvation = 64.850706 kcal Electronic energy + Delta-G solvation = -27163.000953 eV Core-core repulsion = 23541.186121 eV Total energy + Delta-G solvation = -3621.814831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25178 -38.59428 -37.69175 -36.96400 -34.02274 -32.24190 -31.67705 -31.24572 -28.07089 -27.69970 -27.47412 -26.58675 -23.72193 -23.46112 -22.48898 -21.96518 -20.76384 -20.13324 -19.21526 -17.66989 -16.55142 -16.00055 -15.81801 -15.52046 -15.22644 -15.16520 -14.94864 -14.41066 -14.36726 -14.22755 -13.92204 -13.58727 -13.07822 -12.93021 -12.77728 -12.45342 -12.34125 -12.02564 -11.81476 -11.69635 -11.55740 -11.52856 -11.48452 -11.07979 -10.99793 -10.93780 -10.78224 -10.54203 -9.96212 -9.84175 -9.38376 -9.08037 -8.95741 -8.83580 -8.81049 -8.39414 -8.19943 -6.88547 -5.78762 -3.10149 0.95384 1.30186 3.16588 3.37072 3.43148 3.44875 3.63472 3.90929 4.25701 4.43486 4.74424 4.75998 4.87729 5.02871 5.16146 5.20524 5.23664 5.30783 5.39702 5.44411 5.47759 5.51493 5.59080 5.63643 5.74065 5.80591 5.83380 5.88704 5.94347 6.00589 6.08655 6.16541 6.28675 6.34424 6.39876 6.42086 6.52786 6.61369 6.76386 6.85029 6.99394 7.10428 7.16882 7.24423 7.39437 7.58126 7.96622 8.02247 8.70751 9.02553 9.69714 10.63788 11.39060 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.004135 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.974714 B = 6769.941835 C = 8144.851727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.523 5.523 3 C 0.034 3.966 4 C 0.091 3.909 5 C -0.025 4.025 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.127 4.127 9 C -0.086 4.086 10 C -0.108 4.108 11 C 0.553 3.447 12 O -0.526 6.526 13 N -0.712 5.712 14 C 0.125 3.875 15 C 0.126 3.874 16 H 0.047 0.953 17 C -0.161 4.161 18 C 0.154 3.846 19 N -0.601 5.601 20 C -0.214 4.214 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.904 3.096 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.028 0.972 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.400 0.600 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 9.332 1.985 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.246 5.246 3 C -0.114 4.114 4 C -0.036 4.036 5 C -0.027 4.027 6 C -0.147 4.147 7 C -0.119 4.119 8 C -0.145 4.145 9 C -0.104 4.104 10 C -0.112 4.112 11 C 0.340 3.660 12 O -0.404 6.404 13 N -0.362 5.362 14 C 0.001 3.999 15 C 0.018 3.982 16 H 0.065 0.935 17 C -0.200 4.200 18 C 0.029 3.971 19 N -0.327 5.327 20 C -0.341 4.341 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.563 5.563 24 Si 0.734 3.266 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.235 0.765 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.034 9.733 1.902 18.854 hybrid contribution -0.601 -0.963 1.538 1.912 sum -16.635 8.770 3.440 19.117 Atomic orbital electron populations 1.22462 0.88474 1.02055 0.99787 1.61767 1.06433 1.13598 1.42789 1.22291 1.01716 0.88084 0.99330 1.21251 1.03244 0.88702 0.90416 1.19814 0.93408 0.95391 0.94073 1.21004 0.97301 0.95646 1.00737 1.21251 0.99239 0.93667 0.97771 1.21100 0.95890 1.00116 0.97443 1.21445 0.96493 0.94186 0.98311 1.19909 0.97550 0.93905 0.99798 1.18120 0.82217 0.86044 0.79602 1.90669 1.69892 1.15775 1.64066 1.45911 1.31454 1.13589 1.45295 1.21754 0.87088 0.96364 0.94706 1.22423 0.93509 0.90168 0.92076 0.93528 1.23667 0.97714 1.00254 0.98400 1.21972 0.96646 0.90038 0.88492 1.45658 1.22271 1.50817 1.13964 1.18865 1.11872 1.13830 0.89567 0.90133 1.24798 0.97819 0.99102 0.98535 1.69845 1.14360 1.34337 1.37731 0.86215 0.77155 0.80153 0.83045 1.21624 1.21707 1.20535 0.96262 0.91792 0.91507 0.90564 0.91903 0.96508 0.95345 0.86896 0.86040 0.85890 0.85527 0.85283 0.76461 0.92244 0.91230 0.92363 0.90235 0.91419 0.95619 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.28 60.07 0.56 0.78 16 2 N -0.52 -6.99 4.28 -252.73 -1.08 -8.07 16 3 C 0.03 0.40 9.57 60.06 0.57 0.98 16 4 C 0.09 1.24 4.11 -4.98 -0.02 1.22 16 5 C -0.03 -0.35 4.61 -104.23 -0.48 -0.83 16 6 C -0.13 -1.45 8.72 -39.64 -0.35 -1.79 16 7 C -0.10 -1.05 10.04 -39.49 -0.40 -1.45 16 8 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 9 C -0.09 -1.16 9.54 -39.18 -0.37 -1.53 16 10 C -0.11 -1.65 5.87 -104.97 -0.62 -2.27 16 11 C 0.55 9.72 7.74 -12.33 -0.10 9.62 16 12 O -0.53 -10.06 12.75 5.32 0.07 -10.00 16 13 N -0.71 -12.45 5.28 -61.25 -0.32 -12.77 16 14 C 0.13 2.28 5.52 -4.04 -0.02 2.26 16 15 C 0.13 2.43 4.10 -72.40 -0.30 2.13 16 16 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.16 -2.93 8.03 -26.22 -0.21 -3.14 16 18 C 0.15 3.52 7.31 -8.51 -0.06 3.45 16 19 N -0.60 -14.56 3.65 -177.01 -0.65 -15.20 16 20 C -0.21 -5.70 10.54 -15.06 -0.16 -5.86 16 21 H 0.08 2.08 7.61 -52.48 -0.40 1.68 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -26.79 11.62 55.49 0.65 -26.15 16 24 Si 0.90 21.87 29.56 -169.99 -5.02 16.85 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.75 6.65 -51.93 -0.35 0.40 16 31 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 32 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.03 0.34 7.98 -51.93 -0.41 -0.07 16 35 H 0.11 1.81 5.86 -51.93 -0.30 1.51 16 36 H 0.12 1.11 8.03 -52.49 -0.42 0.69 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.68 6.41 -52.49 -0.34 1.34 16 40 H 0.40 6.76 6.51 -40.82 -0.27 6.49 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 45 H 0.07 1.72 7.31 -51.93 -0.38 1.34 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -31.32 379.24 -10.58 -41.91 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.49 Total: 6.25 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.44 Total: 1.47 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -1.41 Total: -62.19 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.32 -10.58 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039052403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.758 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds