Wall clock time and date at job start Tue Mar 31 2020 11:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99987 * 2 1 4 4 C 1.46904 * 111.00208 * 123.95514 * 2 1 3 5 5 C 1.50697 * 109.46751 * 66.04801 * 4 2 1 6 6 C 1.37979 * 120.07050 * 260.01748 * 5 4 2 7 7 C 1.38342 * 120.14311 * 179.97438 * 6 5 4 8 8 C 1.38386 * 120.29341 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.14392 * 359.97438 * 8 7 6 10 10 C 1.39558 * 120.07470 * 80.00535 * 5 4 2 11 11 C 1.47843 * 120.14449 * 359.73627 * 10 5 4 12 12 O 1.21549 * 119.99940 * 0.02562 * 11 10 5 13 13 N 1.34774 * 119.99980 * 180.02562 * 11 10 5 14 14 C 1.46505 * 120.00216 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47146 * 180.02562 * 14 13 11 16 16 H 1.09006 * 112.74084 * 56.24288 * 15 14 13 17 17 C 1.53496 * 113.46547 * 187.05704 * 15 14 13 18 18 C 1.53494 * 83.34383 * 140.84979 * 17 15 14 19 19 N 1.47060 * 113.46789 * 285.49222 * 15 14 13 20 20 C 1.36937 * 136.05842 * 38.06940 * 19 15 14 21 21 H 1.08005 * 119.99847 * 353.56224 * 20 19 15 22 22 C 1.38815 * 120.00290 * 173.56302 * 20 19 15 23 23 N 1.31614 * 119.99658 * 5.05248 * 22 20 19 24 24 Si 1.86803 * 120.00141 * 185.05646 * 22 20 19 25 25 H 1.48502 * 109.46998 * 94.98528 * 24 22 20 26 26 H 1.48500 * 109.47016 * 214.98635 * 24 22 20 27 27 H 1.48502 * 109.46860 * 334.98445 * 24 22 20 28 28 H 1.08994 * 109.46805 * 296.04481 * 1 2 3 29 29 H 1.08995 * 109.47080 * 56.04724 * 1 2 3 30 30 H 1.08999 * 109.46302 * 176.04547 * 1 2 3 31 31 H 1.09001 * 109.47502 * 183.95384 * 3 2 1 32 32 H 1.09000 * 109.47492 * 303.95402 * 3 2 1 33 33 H 1.08996 * 109.47401 * 63.95457 * 3 2 1 34 34 H 1.08999 * 109.47028 * 306.04343 * 4 2 1 35 35 H 1.09003 * 109.46736 * 186.04800 * 4 2 1 36 36 H 1.07999 * 119.92813 * 359.96001 * 6 5 4 37 37 H 1.08002 * 119.85492 * 180.02562 * 7 6 5 38 38 H 1.07992 * 119.92428 * 180.02562 * 8 7 6 39 39 H 1.07995 * 120.07341 * 180.02562 * 9 8 7 40 40 H 0.96997 * 120.00029 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.46668 * 300.00482 * 14 13 11 42 42 H 1.08994 * 109.47268 * 59.99839 * 14 13 11 43 43 H 1.08999 * 114.20483 * 254.43729 * 17 15 14 44 44 H 1.08998 * 114.20646 * 27.26387 * 17 15 14 45 45 H 1.08999 * 113.46918 * 219.15375 * 18 17 15 46 46 H 1.09004 * 113.47020 * 88.71138 * 18 17 15 47 47 H 0.96999 * 120.00017 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6370 -2.2204 0.9727 6 6 0.5653 -2.7506 1.6613 7 6 0.2346 -4.0855 1.5106 8 6 0.9753 -4.8976 0.6700 9 6 2.0491 -4.3800 -0.0241 10 6 2.3881 -3.0339 0.1231 11 6 3.5340 -2.4710 -0.6224 12 8 3.8240 -1.2974 -0.4957 13 7 4.2570 -3.2591 -1.4425 14 6 5.3929 -2.7015 -2.1809 15 6 6.0357 -3.7982 -3.0322 16 1 5.3283 -4.2727 -3.7124 17 6 7.3392 -3.3584 -3.7130 18 6 7.7948 -4.7806 -3.3585 19 7 6.8291 -4.7577 -2.2495 20 6 6.7181 -5.3628 -1.0261 21 1 5.9260 -5.0744 -0.3509 22 6 7.6236 -6.3469 -0.6537 23 7 8.6464 -6.6286 -1.4326 24 14 7.3903 -7.2712 0.9527 25 1 6.6608 -8.5384 0.6932 26 1 8.7173 -7.5764 1.5454 27 1 6.6074 -6.4336 1.8965 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3632 -1.0253 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 -0.0164 -2.1223 2.3194 37 1 -0.6055 -4.4956 2.0515 38 1 0.7116 -5.9387 0.5565 39 1 2.6262 -5.0148 -0.6802 40 1 4.0253 -4.1955 -1.5439 41 1 5.0453 -1.8963 -2.8282 42 1 6.1272 -2.3102 -1.4768 43 1 7.2441 -3.1732 -4.7830 44 1 7.8767 -2.5719 -3.1834 45 1 8.8325 -4.8347 -3.0294 46 1 7.5566 -5.5169 -4.1263 47 1 9.2794 -7.3160 -1.1722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039052403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:59 Heat of formation + Delta-G solvation = 44.948294 kcal Electronic energy + Delta-G solvation = -27163.863986 eV Core-core repulsion = 23541.186121 eV Total energy + Delta-G solvation = -3622.677865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39968 -40.09384 -39.05612 -37.91143 -35.45292 -34.24813 -32.63482 -32.29371 -29.94659 -29.12355 -28.39052 -27.64147 -25.38142 -24.86312 -23.58403 -23.26438 -21.84697 -21.44875 -20.88667 -19.02081 -18.22897 -17.16518 -17.09587 -16.86319 -16.49020 -16.30353 -16.14458 -15.89668 -15.60794 -15.33156 -15.24096 -15.10677 -14.69312 -14.18951 -13.73474 -13.67056 -13.45944 -13.23374 -13.19572 -12.94957 -12.92974 -12.72467 -12.63942 -12.56061 -12.47124 -12.43433 -12.30367 -11.92149 -11.83719 -11.63047 -11.07353 -10.84307 -10.44644 -10.03116 -9.84848 -9.68471 -9.12914 -8.86783 -7.88069 -5.18560 -0.05476 0.37846 1.44068 1.44911 1.53245 2.02565 2.30085 2.48595 2.85274 3.31038 3.33548 3.46827 3.76412 3.82124 3.85119 3.95593 4.16294 4.19464 4.26881 4.35488 4.36014 4.45008 4.52267 4.58490 4.60563 4.67839 4.71041 4.75472 4.83592 4.88576 4.95532 5.00643 5.05721 5.06107 5.08749 5.12555 5.34828 5.38420 5.50043 5.54216 5.55528 5.61568 5.74913 5.95724 5.97323 6.15366 6.26410 6.66491 6.94923 7.36556 7.64879 8.65710 9.30340 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.004135 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.974714 B = 6769.941835 C = 8144.851727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.038 3.962 4 C 0.096 3.904 5 C -0.037 4.037 6 C -0.126 4.126 7 C -0.089 4.089 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.137 4.137 11 C 0.547 3.453 12 O -0.549 6.549 13 N -0.714 5.714 14 C 0.137 3.863 15 C 0.132 3.868 16 H 0.066 0.934 17 C -0.134 4.134 18 C 0.147 3.853 19 N -0.628 5.628 20 C -0.206 4.206 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.965 3.035 25 H -0.284 1.284 26 H -0.299 1.299 27 H -0.272 1.272 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.126 0.874 40 H 0.402 0.598 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.023 0.977 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.735 9.599 2.618 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.110 4.110 4 C -0.031 4.031 5 C -0.039 4.039 6 C -0.144 4.144 7 C -0.106 4.106 8 C -0.147 4.147 9 C -0.117 4.117 10 C -0.140 4.140 11 C 0.336 3.664 12 O -0.429 6.429 13 N -0.365 5.365 14 C 0.012 3.988 15 C 0.026 3.974 16 H 0.083 0.917 17 C -0.173 4.173 18 C 0.021 3.979 19 N -0.354 5.354 20 C -0.334 4.334 21 H 0.102 0.898 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.794 3.206 25 H -0.211 1.211 26 H -0.226 1.226 27 H -0.197 1.197 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.169 0.831 39 H 0.144 0.856 40 H 0.238 0.762 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.041 0.959 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.260 10.021 2.524 21.857 hybrid contribution 0.308 -0.987 1.327 1.682 sum -18.953 9.034 3.850 21.346 Atomic orbital electron populations 1.22446 0.86844 1.02165 1.00874 1.61729 1.08031 1.14140 1.43025 1.22232 1.00318 0.87934 1.00530 1.21089 1.01405 0.89278 0.91314 1.19961 0.94249 0.95220 0.94423 1.21295 0.96394 0.96494 1.00207 1.21690 0.99369 0.93027 0.96560 1.21437 0.94944 1.01499 0.96801 1.21536 0.97545 0.93533 0.99038 1.19841 0.97765 0.95058 1.01337 1.18605 0.82660 0.85810 0.79324 1.90662 1.70703 1.16734 1.64763 1.45912 1.31275 1.13757 1.45579 1.21514 0.86844 0.96285 0.94152 1.22556 0.94110 0.89143 0.91627 0.91671 1.23488 0.95899 0.97045 1.00840 1.21984 0.94658 0.93090 0.88176 1.45964 1.24167 1.51351 1.13947 1.19163 1.10822 1.12759 0.90692 0.89842 1.25530 0.98140 1.00692 1.01723 1.70020 1.15412 1.35177 1.39517 0.85252 0.76500 0.79065 0.79793 1.21104 1.22639 1.19730 0.94780 0.91046 0.91802 0.92860 0.90802 0.95096 0.93758 0.90125 0.83511 0.82254 0.83116 0.85612 0.76202 0.90589 0.94091 0.88261 0.90201 0.94944 0.95947 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.28 127.69 1.18 1.67 16 2 N -0.55 -14.14 4.28 -953.49 -4.08 -18.22 16 3 C 0.04 0.88 9.57 127.69 1.22 2.10 16 4 C 0.10 2.59 4.11 85.56 0.35 2.94 16 5 C -0.04 -0.97 4.61 -19.61 -0.09 -1.06 16 6 C -0.13 -2.44 8.72 22.23 0.19 -2.24 16 7 C -0.09 -1.49 10.04 22.33 0.22 -1.27 16 8 C -0.13 -2.56 10.03 22.23 0.22 -2.34 16 9 C -0.10 -2.54 9.54 22.53 0.21 -2.32 16 10 C -0.14 -4.12 5.87 -20.09 -0.12 -4.24 16 11 C 0.55 19.53 7.74 86.79 0.67 20.20 16 12 O -0.55 -21.65 12.75 -3.87 -0.05 -21.70 16 13 N -0.71 -25.12 5.28 -465.98 -2.46 -27.58 16 14 C 0.14 4.96 5.52 86.38 0.48 5.44 16 15 C 0.13 4.96 4.10 41.79 0.17 5.13 16 16 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 17 C -0.13 -4.68 8.03 30.93 0.25 -4.43 16 18 C 0.15 6.77 7.31 83.18 0.61 7.37 16 19 N -0.63 -30.68 3.65 -713.94 -2.60 -33.28 16 20 C -0.21 -11.12 10.54 84.03 0.89 -10.24 16 21 H 0.08 4.35 7.61 -2.91 -0.02 4.33 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.95 -57.43 11.62 21.65 0.25 -57.17 16 24 Si 0.96 45.81 29.56 68.60 2.03 47.84 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 30 H 0.06 1.28 6.65 -2.39 -0.02 1.27 16 31 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 32 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.04 1.00 7.98 -2.39 -0.02 0.99 16 35 H 0.08 2.69 5.86 -2.39 -0.01 2.67 16 36 H 0.15 2.07 8.03 -2.91 -0.02 2.05 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.13 3.22 6.41 -2.91 -0.02 3.20 16 40 H 0.40 13.61 6.51 -92.71 -0.60 13.01 16 41 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.08 2.80 8.12 -2.39 -0.02 2.78 16 45 H 0.03 1.71 7.31 -2.39 -0.02 1.69 16 46 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.15 379.24 0.37 -69.78 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.36 Total: 27.01 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.94 Total: 13.33 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -8.90 Total: -136.26 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.15 0.37 -69.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039052403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.728 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds