Wall clock time and date at job start Tue Mar 31 2020 11:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35539 * 125.67290 * 2 1 4 4 C 1.35444 * 108.86714 * 179.97438 * 3 2 1 5 5 C 1.39846 * 107.86910 * 359.74260 * 4 3 2 6 6 C 1.37648 * 125.67772 * 179.97438 * 2 1 3 7 7 C 1.46670 * 126.23521 * 0.02562 * 6 2 1 8 8 O 1.21690 * 120.00219 * 17.26019 * 7 6 2 9 9 N 1.34785 * 119.99859 * 197.25640 * 7 6 2 10 10 C 1.48153 * 127.02968 * 356.71735 * 9 7 6 11 11 C 1.55045 * 103.32022 * 140.99447 * 10 9 7 12 12 C 1.54157 * 102.73081 * 36.98649 * 11 10 9 13 13 C 1.47614 * 127.02532 * 176.74118 * 9 7 6 14 14 C 1.52495 * 110.05750 * 97.48520 * 12 11 10 15 15 C 1.53130 * 109.60263 * 181.75754 * 14 12 11 16 16 C 1.53196 * 109.31294 * 299.46684 * 15 14 12 17 17 N 1.47013 * 108.85248 * 55.05470 * 16 15 14 18 18 C 1.36939 * 120.66388 * 125.97313 * 17 16 15 19 19 H 1.08000 * 119.99573 * 331.11762 * 18 17 16 20 20 C 1.38810 * 119.99830 * 151.12487 * 18 17 16 21 21 N 1.31613 * 120.00086 * 342.63968 * 20 18 17 22 22 Si 1.86800 * 119.99800 * 162.64960 * 20 18 17 23 23 H 1.48498 * 109.47194 * 59.99556 * 22 20 18 24 24 H 1.48506 * 109.46841 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46854 * 299.99263 * 22 20 18 26 26 C 1.47027 * 118.65106 * 305.99651 * 17 16 15 27 27 H 1.09003 * 109.47263 * 264.59206 * 1 2 3 28 28 H 1.09000 * 109.47754 * 24.60023 * 1 2 3 29 29 H 1.09001 * 109.46903 * 144.59603 * 1 2 3 30 30 H 1.07997 * 125.56440 * 359.94831 * 3 2 1 31 31 H 1.08004 * 126.06950 * 180.02562 * 4 3 2 32 32 H 1.07991 * 126.45808 * 180.30217 * 5 4 3 33 33 H 1.09001 * 110.65255 * 259.45567 * 10 9 7 34 34 H 1.09010 * 110.64943 * 22.37532 * 10 9 7 35 35 H 1.09002 * 110.75888 * 278.67938 * 11 10 9 36 36 H 1.08992 * 110.75930 * 155.29675 * 11 10 9 37 37 H 1.08996 * 109.96932 * 85.99185 * 13 9 7 38 38 H 1.08999 * 109.97285 * 324.72166 * 13 9 7 39 39 H 1.08994 * 109.45174 * 61.71267 * 14 12 11 40 40 H 1.09007 * 109.42749 * 301.77995 * 14 12 11 41 41 H 1.08999 * 109.50546 * 59.42351 * 15 14 12 42 42 H 1.08995 * 109.50183 * 179.50662 * 15 14 12 43 43 H 1.08999 * 109.56574 * 174.91161 * 16 15 14 44 44 H 1.08997 * 109.56743 * 295.26236 * 16 15 14 45 45 H 0.96999 * 119.99901 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58184 * 293.00369 * 26 17 16 47 47 H 1.09004 * 109.69978 * 172.65668 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1011 0.0000 4 6 3.5520 0.7095 0.0006 5 6 3.5780 -0.6887 0.0069 6 6 2.2678 -1.1181 0.0005 7 6 1.8125 -2.5123 0.0006 8 8 0.6670 -2.7784 -0.3125 9 7 2.6628 -3.4990 0.3474 10 6 4.0981 -3.3612 0.6875 11 6 4.2855 -4.3611 1.8576 12 6 3.3679 -5.5322 1.4540 13 6 2.3543 -4.9377 0.4653 14 6 4.1855 -6.6289 0.7799 15 6 3.2581 -7.7669 0.3442 16 6 2.5587 -8.3502 1.5760 17 7 1.8726 -7.2645 2.2914 18 6 0.5383 -7.3557 2.5856 19 1 -0.1170 -7.9309 1.9482 20 6 0.0281 -6.7090 3.7028 21 7 0.8397 -6.3029 4.6560 22 14 -1.8105 -6.4151 3.8534 23 1 -2.5230 -7.7178 3.8363 24 1 -2.0964 -5.7116 5.1296 25 1 -2.2736 -5.5825 2.7142 26 6 2.6481 -6.0787 2.6841 27 1 -0.3634 -0.0969 1.0231 28 1 -0.3634 0.9344 -0.4278 29 1 -0.3633 -0.8377 -0.5954 30 1 1.9081 2.1236 -0.0008 31 1 4.4132 1.3613 0.0011 32 1 4.4583 -1.3142 0.0135 33 1 4.7228 -3.6409 -0.1608 34 1 4.3212 -2.3437 1.0087 35 1 3.9575 -3.9200 2.7989 36 1 5.3230 -4.6883 1.9238 37 1 2.4547 -5.4208 -0.5065 38 1 1.3414 -5.0714 0.8451 39 1 4.9262 -7.0126 1.4814 40 1 4.6917 -6.2185 -0.0940 41 1 2.5112 -7.3821 -0.3502 42 1 3.8429 -8.5457 -0.1451 43 1 1.8311 -9.0987 1.2623 44 1 3.2979 -8.8097 2.2322 45 1 0.4831 -5.8513 5.4369 46 1 3.3802 -6.3557 3.4428 47 1 1.9782 -5.3173 3.0837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040075628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:22 Heat of formation + Delta-G solvation = 53.920202 kcal Electronic energy + Delta-G solvation = -28114.654036 eV Core-core repulsion = 24492.365222 eV Total energy + Delta-G solvation = -3622.288814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38528 -39.76943 -37.92477 -35.79416 -33.27678 -32.74879 -31.46176 -29.95882 -29.54983 -28.70568 -26.51625 -25.66857 -25.24567 -23.44687 -22.18226 -21.41779 -20.72105 -20.30055 -19.06385 -18.07137 -16.99314 -16.58996 -16.15406 -15.73629 -15.14643 -15.02401 -14.73744 -14.03416 -13.96820 -13.71958 -13.61649 -13.36472 -13.21814 -12.89731 -12.78910 -12.58530 -12.30593 -12.27414 -12.05186 -12.03577 -11.60367 -11.49334 -11.13413 -10.92499 -10.75712 -10.59284 -10.37691 -10.24957 -10.14848 -9.80462 -9.68528 -9.45350 -9.37197 -8.75152 -8.47804 -8.40208 -8.12291 -6.63303 -5.77297 -3.19161 1.59536 2.61833 2.75079 3.41863 3.43317 3.46909 3.51492 3.55234 4.52836 4.64163 4.77196 4.92722 4.95514 5.12937 5.22843 5.23352 5.33410 5.38636 5.45657 5.51676 5.56176 5.61447 5.66011 5.70070 5.77935 6.02522 6.03655 6.08515 6.13924 6.18890 6.23460 6.36478 6.42170 6.45717 6.48413 6.71612 6.77882 6.79576 6.88447 6.90976 6.97722 7.02353 7.19440 7.32192 7.61791 7.83276 7.84367 8.42243 8.47218 9.23458 9.86876 10.44068 11.31447 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.004927 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.901020 B = 5681.253112 C = 7076.894450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.412 5.412 3 C 0.006 3.994 4 C -0.210 4.210 5 C -0.159 4.159 6 C -0.036 4.036 7 C 0.600 3.400 8 O -0.550 6.550 9 N -0.604 5.604 10 C 0.081 3.919 11 C -0.124 4.124 12 C -0.094 4.094 13 C 0.130 3.870 14 C -0.093 4.093 15 C -0.139 4.139 16 C 0.145 3.855 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.896 3.104 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.190 3.810 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.022 0.978 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 11.825 -9.078 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.084 5.084 3 C -0.129 4.129 4 C -0.234 4.234 5 C -0.185 4.185 6 C -0.150 4.150 7 C 0.389 3.611 8 O -0.430 6.430 9 N -0.336 5.336 10 C -0.042 4.042 11 C -0.163 4.163 12 C -0.096 4.096 13 C 0.009 3.991 14 C -0.131 4.131 15 C -0.178 4.178 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.726 3.274 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.064 3.936 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.183 0.817 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.461 11.774 -9.097 16.645 hybrid contribution -0.899 0.291 0.200 0.966 sum 6.562 12.066 -8.897 16.365 Atomic orbital electron populations 1.22291 0.76187 1.04911 1.04373 1.43860 1.06818 1.04992 1.52779 1.21972 0.90798 0.91363 1.08756 1.20817 0.95877 0.95071 1.11607 1.21830 0.94955 0.95419 1.06280 1.20099 0.90501 0.87563 1.16841 1.16539 0.84208 0.82761 0.77550 1.90788 1.18429 1.83900 1.49897 1.48504 1.10445 1.08073 1.66579 1.23141 0.81729 1.01429 0.97872 1.22741 0.99877 0.95644 0.98038 1.21843 0.94902 0.94228 0.98664 1.22155 1.01559 0.76966 0.98432 1.21376 0.97190 0.95614 0.98906 1.22086 0.98589 0.97448 0.99665 1.20921 0.94800 0.91012 0.91438 1.44056 1.06675 1.14351 1.66217 1.19101 0.83320 1.30761 1.05056 0.91810 1.25003 0.97494 1.01883 0.94794 1.70010 1.33706 1.42974 1.07897 0.86461 0.85777 0.78197 0.76978 1.20818 1.21674 1.20855 1.20718 0.93469 0.90095 0.89341 0.90601 0.89908 0.87786 0.81680 0.84166 0.82691 0.91115 0.88641 0.90476 0.90403 0.92323 0.88967 0.92242 0.93444 0.92258 0.93089 0.92928 0.96512 0.93662 0.96039 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.65 59.85 0.64 1.39 16 2 N -0.41 -5.62 3.16 -120.24 -0.38 -6.00 16 3 C 0.01 0.07 11.37 -16.91 -0.19 -0.13 16 4 C -0.21 -2.34 10.81 -39.98 -0.43 -2.77 16 5 C -0.16 -2.05 9.10 -39.11 -0.36 -2.41 16 6 C -0.04 -0.56 6.78 -81.98 -0.56 -1.12 16 7 C 0.60 11.21 7.80 -12.85 -0.10 11.11 16 8 O -0.55 -12.02 15.24 5.20 0.08 -11.94 16 9 N -0.60 -10.49 3.30 -171.37 -0.57 -11.06 16 10 C 0.08 1.07 5.91 -2.05 -0.01 1.06 16 11 C -0.12 -1.82 6.15 -25.05 -0.15 -1.97 16 12 C -0.09 -1.67 0.62 -154.05 -0.09 -1.76 16 13 C 0.13 2.50 5.56 -3.14 -0.02 2.48 16 14 C -0.09 -1.46 4.40 -26.92 -0.12 -1.58 16 15 C -0.14 -2.34 5.87 -26.56 -0.16 -2.49 16 16 C 0.14 2.98 6.50 -3.66 -0.02 2.96 16 17 N -0.59 -14.50 2.76 -172.50 -0.48 -14.98 16 18 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 19 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 20 C 0.01 0.20 4.90 -17.43 -0.09 0.11 16 21 N -0.90 -26.26 11.30 55.49 0.63 -25.63 16 22 Si 0.90 22.41 29.59 -169.99 -5.03 17.38 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 26 C 0.19 4.36 3.58 -3.94 -0.01 4.35 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.10 1.46 6.40 -51.93 -0.33 1.13 16 30 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.16 1.68 5.15 -52.49 -0.27 1.41 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.13 4.53 -51.92 -0.24 0.89 16 35 H 0.08 1.23 7.84 -51.93 -0.41 0.83 16 36 H 0.08 0.95 7.83 -51.93 -0.41 0.55 16 37 H 0.06 1.09 6.54 -51.93 -0.34 0.75 16 38 H 0.09 2.20 7.55 -51.93 -0.39 1.80 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.05 6.65 -51.93 -0.35 0.70 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.08 7.94 -51.93 -0.41 0.66 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.27 6.19 -51.93 -0.32 1.95 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -32.87 360.30 -9.37 -42.25 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.24 Total: 2.43 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.82 Total: 2.12 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.79 Total: -57.67 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.87 -9.37 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040075628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.167 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds