Wall clock time and date at job start Tue Mar 31 2020 11:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35539 * 125.67290 * 2 1 4 4 C 1.35444 * 108.86714 * 179.97438 * 3 2 1 5 5 C 1.39846 * 107.86910 * 359.74260 * 4 3 2 6 6 C 1.37648 * 125.67772 * 179.97438 * 2 1 3 7 7 C 1.46670 * 126.23521 * 0.02562 * 6 2 1 8 8 O 1.21690 * 120.00219 * 17.26019 * 7 6 2 9 9 N 1.34785 * 119.99859 * 197.25640 * 7 6 2 10 10 C 1.48153 * 127.02968 * 356.71735 * 9 7 6 11 11 C 1.55045 * 103.32022 * 140.99447 * 10 9 7 12 12 C 1.54157 * 102.73081 * 36.98649 * 11 10 9 13 13 C 1.47614 * 127.02532 * 176.74118 * 9 7 6 14 14 C 1.52495 * 110.05750 * 97.48520 * 12 11 10 15 15 C 1.53130 * 109.60263 * 181.75754 * 14 12 11 16 16 C 1.53196 * 109.31294 * 299.46684 * 15 14 12 17 17 N 1.47013 * 108.85248 * 55.05470 * 16 15 14 18 18 C 1.36939 * 120.66388 * 125.97313 * 17 16 15 19 19 H 1.08000 * 119.99573 * 331.11762 * 18 17 16 20 20 C 1.38810 * 119.99830 * 151.12487 * 18 17 16 21 21 N 1.31613 * 120.00086 * 342.63968 * 20 18 17 22 22 Si 1.86800 * 119.99800 * 162.64960 * 20 18 17 23 23 H 1.48498 * 109.47194 * 59.99556 * 22 20 18 24 24 H 1.48506 * 109.46841 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46854 * 299.99263 * 22 20 18 26 26 C 1.47027 * 118.65106 * 305.99651 * 17 16 15 27 27 H 1.09003 * 109.47263 * 264.59206 * 1 2 3 28 28 H 1.09000 * 109.47754 * 24.60023 * 1 2 3 29 29 H 1.09001 * 109.46903 * 144.59603 * 1 2 3 30 30 H 1.07997 * 125.56440 * 359.94831 * 3 2 1 31 31 H 1.08004 * 126.06950 * 180.02562 * 4 3 2 32 32 H 1.07991 * 126.45808 * 180.30217 * 5 4 3 33 33 H 1.09001 * 110.65255 * 259.45567 * 10 9 7 34 34 H 1.09010 * 110.64943 * 22.37532 * 10 9 7 35 35 H 1.09002 * 110.75888 * 278.67938 * 11 10 9 36 36 H 1.08992 * 110.75930 * 155.29675 * 11 10 9 37 37 H 1.08996 * 109.96932 * 85.99185 * 13 9 7 38 38 H 1.08999 * 109.97285 * 324.72166 * 13 9 7 39 39 H 1.08994 * 109.45174 * 61.71267 * 14 12 11 40 40 H 1.09007 * 109.42749 * 301.77995 * 14 12 11 41 41 H 1.08999 * 109.50546 * 59.42351 * 15 14 12 42 42 H 1.08995 * 109.50183 * 179.50662 * 15 14 12 43 43 H 1.08999 * 109.56574 * 174.91161 * 16 15 14 44 44 H 1.08997 * 109.56743 * 295.26236 * 16 15 14 45 45 H 0.96999 * 119.99901 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58184 * 293.00369 * 26 17 16 47 47 H 1.09004 * 109.69978 * 172.65668 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1011 0.0000 4 6 3.5520 0.7095 0.0006 5 6 3.5780 -0.6887 0.0069 6 6 2.2678 -1.1181 0.0005 7 6 1.8125 -2.5123 0.0006 8 8 0.6670 -2.7784 -0.3125 9 7 2.6628 -3.4990 0.3474 10 6 4.0981 -3.3612 0.6875 11 6 4.2855 -4.3611 1.8576 12 6 3.3679 -5.5322 1.4540 13 6 2.3543 -4.9377 0.4653 14 6 4.1855 -6.6289 0.7799 15 6 3.2581 -7.7669 0.3442 16 6 2.5587 -8.3502 1.5760 17 7 1.8726 -7.2645 2.2914 18 6 0.5383 -7.3557 2.5856 19 1 -0.1170 -7.9309 1.9482 20 6 0.0281 -6.7090 3.7028 21 7 0.8397 -6.3029 4.6560 22 14 -1.8105 -6.4151 3.8534 23 1 -2.5230 -7.7178 3.8363 24 1 -2.0964 -5.7116 5.1296 25 1 -2.2736 -5.5825 2.7142 26 6 2.6481 -6.0787 2.6841 27 1 -0.3634 -0.0969 1.0231 28 1 -0.3634 0.9344 -0.4278 29 1 -0.3633 -0.8377 -0.5954 30 1 1.9081 2.1236 -0.0008 31 1 4.4132 1.3613 0.0011 32 1 4.4583 -1.3142 0.0135 33 1 4.7228 -3.6409 -0.1608 34 1 4.3212 -2.3437 1.0087 35 1 3.9575 -3.9200 2.7989 36 1 5.3230 -4.6883 1.9238 37 1 2.4547 -5.4208 -0.5065 38 1 1.3414 -5.0714 0.8451 39 1 4.9262 -7.0126 1.4814 40 1 4.6917 -6.2185 -0.0940 41 1 2.5112 -7.3821 -0.3502 42 1 3.8429 -8.5457 -0.1451 43 1 1.8311 -9.0987 1.2623 44 1 3.2979 -8.8097 2.2322 45 1 0.4831 -5.8513 5.4369 46 1 3.3802 -6.3557 3.4428 47 1 1.9782 -5.3173 3.0837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040075628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:21 Heat of formation + Delta-G solvation = 33.756773 kcal Electronic energy + Delta-G solvation = -28115.528388 eV Core-core repulsion = 24492.365222 eV Total energy + Delta-G solvation = -3623.163165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.41176 -41.13091 -39.39176 -37.36842 -34.96339 -33.90491 -32.95126 -31.78198 -30.68864 -30.01341 -27.46498 -27.38380 -26.89397 -24.77623 -23.93278 -22.59647 -21.98308 -21.54662 -20.18141 -19.64573 -18.54572 -18.12983 -17.45053 -17.00959 -16.80409 -16.22489 -16.10233 -15.80437 -15.43463 -15.15093 -14.88417 -14.82855 -14.50972 -14.26671 -14.15555 -13.79142 -13.68856 -13.38546 -13.25065 -13.12519 -13.03903 -12.95634 -12.84359 -12.73282 -12.60271 -12.24100 -11.99883 -11.90050 -11.85702 -11.41521 -11.06558 -11.03506 -10.93964 -10.57864 -9.80946 -9.67672 -9.14550 -8.66556 -7.92539 -5.35326 0.49112 1.34447 1.39281 1.44382 1.55177 1.85794 2.28662 2.32254 2.44173 3.21940 3.43706 3.64526 3.78264 3.87098 3.93717 3.98635 4.18867 4.25023 4.27699 4.31621 4.37421 4.44206 4.49675 4.52920 4.62482 4.67325 4.70530 4.79678 4.92862 4.95773 4.98890 5.10436 5.13261 5.15197 5.17710 5.23311 5.28374 5.37934 5.43367 5.50225 5.56347 5.67096 5.74582 5.87048 5.99188 6.33376 6.35762 6.53264 7.06236 7.12468 7.85538 8.35435 9.12827 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.004927 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.901020 B = 5681.253112 C = 7076.894450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.425 5.425 3 C 0.021 3.979 4 C -0.216 4.216 5 C -0.144 4.144 6 C -0.088 4.088 7 C 0.587 3.413 8 O -0.603 6.603 9 N -0.609 5.609 10 C 0.085 3.915 11 C -0.118 4.118 12 C -0.086 4.086 13 C 0.140 3.860 14 C -0.087 4.087 15 C -0.130 4.130 16 C 0.138 3.862 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.058 0.942 20 C -0.043 4.043 21 N -0.928 5.928 22 Si 0.948 3.052 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.202 3.798 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.072 0.928 30 H 0.206 0.794 31 H 0.174 0.826 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.019 0.981 45 H 0.248 0.752 46 H 0.003 0.997 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 13.720 -10.716 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.098 5.098 3 C -0.114 4.114 4 C -0.239 4.239 5 C -0.170 4.170 6 C -0.200 4.200 7 C 0.380 3.620 8 O -0.487 6.487 9 N -0.340 5.340 10 C -0.035 4.035 11 C -0.157 4.157 12 C -0.088 4.088 13 C 0.018 3.982 14 C -0.125 4.125 15 C -0.169 4.169 16 C 0.013 3.987 17 N -0.332 5.332 18 C -0.388 4.388 19 H 0.076 0.924 20 C -0.239 4.239 21 N -0.574 5.574 22 Si 0.777 3.223 23 H -0.194 1.194 24 H -0.216 1.216 25 H -0.221 1.221 26 C 0.076 3.924 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.091 0.909 30 H 0.223 0.777 31 H 0.191 0.809 32 H 0.193 0.807 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.021 0.979 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.701 13.643 -10.743 20.397 hybrid contribution -1.890 -0.267 0.692 2.030 sum 8.812 13.375 -10.052 18.910 Atomic orbital electron populations 1.22292 0.76028 1.05764 1.03639 1.44104 1.07306 1.05292 1.53148 1.22781 0.90720 0.92219 1.05642 1.21266 0.97039 0.94520 1.11053 1.22181 0.94185 0.96761 1.03852 1.19912 0.92158 0.86473 1.21459 1.17192 0.83696 0.84411 0.76748 1.90742 1.20645 1.84892 1.52440 1.48625 1.12275 1.06983 1.66159 1.23425 0.79477 1.02212 0.98425 1.22751 1.00978 0.94358 0.97606 1.21653 0.95007 0.96189 0.95973 1.21850 0.98743 0.78949 0.98693 1.21389 0.96643 0.94078 1.00370 1.21981 0.98665 0.98851 0.97360 1.21114 0.94720 0.90135 0.92725 1.44310 1.06171 1.16187 1.66573 1.19356 0.85182 1.29841 1.04438 0.92399 1.25599 1.00737 1.02582 0.94941 1.70134 1.34848 1.44192 1.08266 0.85621 0.82169 0.78253 0.76217 1.19361 1.21555 1.22102 1.20443 0.92064 0.88532 0.91357 0.91410 0.85751 0.90926 0.77736 0.80906 0.80702 0.87547 0.86768 0.92729 0.86521 0.91556 0.95123 0.90947 0.89595 0.93491 0.89406 0.93594 0.96261 0.94276 0.97942 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.53 10.65 127.77 1.36 2.89 16 2 N -0.43 -11.18 3.16 -534.32 -1.69 -12.86 16 3 C 0.02 0.40 11.37 83.47 0.95 1.35 16 4 C -0.22 -3.90 10.81 22.01 0.24 -3.67 16 5 C -0.14 -3.28 9.10 22.57 0.21 -3.08 16 6 C -0.09 -2.70 6.78 40.35 0.27 -2.43 16 7 C 0.59 22.89 7.80 86.44 0.67 23.57 16 8 O -0.60 -28.55 15.24 -4.32 -0.07 -28.62 16 9 N -0.61 -21.39 3.30 -814.31 -2.69 -24.08 16 10 C 0.09 2.03 5.91 86.76 0.51 2.54 16 11 C -0.12 -3.23 6.15 31.69 0.19 -3.03 16 12 C -0.09 -3.02 0.62 -51.88 -0.03 -3.05 16 13 C 0.14 5.55 5.56 86.36 0.48 6.03 16 14 C -0.09 -2.46 4.40 30.47 0.13 -2.33 16 15 C -0.13 -4.11 5.87 30.70 0.18 -3.93 16 16 C 0.14 5.71 6.50 86.35 0.56 6.27 16 17 N -0.61 -31.19 2.76 -699.65 -1.93 -33.12 16 18 C -0.26 -14.93 9.58 84.03 0.80 -14.12 16 19 H 0.06 3.34 7.89 -2.91 -0.02 3.31 16 20 C -0.04 -2.52 4.90 84.86 0.42 -2.11 16 21 N -0.93 -57.03 11.30 21.65 0.24 -56.79 16 22 Si 0.95 48.47 29.59 68.60 2.03 50.50 16 23 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.29 -15.42 7.11 99.48 0.71 -14.72 16 26 C 0.20 9.71 3.58 86.16 0.31 10.02 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.12 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.07 2.21 6.40 -2.39 -0.02 2.20 16 30 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.18 3.07 5.15 -2.92 -0.02 3.05 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 2.31 4.53 -2.38 -0.01 2.30 16 35 H 0.05 1.74 7.84 -2.39 -0.02 1.72 16 36 H 0.12 2.32 7.83 -2.39 -0.02 2.30 16 37 H 0.07 2.48 6.54 -2.39 -0.02 2.46 16 38 H 0.03 1.58 7.55 -2.39 -0.02 1.56 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.05 1.61 6.65 -2.39 -0.02 1.60 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.91 7.94 -2.39 -0.02 1.89 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.04 2.13 6.19 -2.39 -0.01 2.12 16 Total: -1.00 -80.46 360.30 4.13 -76.33 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.96 Total: 13.71 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 7.26 Total: 14.92 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -6.06 Total: -126.85 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.07 Total: -28.62 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -80.46 4.13 -76.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040075628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.091 kcal (2) G-P(sol) polarization free energy of solvation -80.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds