Wall clock time and date at job start Tue Mar 31 2020 11:09:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35531 * 125.68181 * 2 1
4 4 C 1.35448 * 108.87303 * 180.26211 * 3 2 1
5 5 C 1.39834 * 107.86637 * 359.76441 * 4 3 2
6 6 C 1.37658 * 125.67659 * 179.86272 * 2 1 3
7 7 C 1.46683 * 126.23181 * 0.02562 * 6 2 1
8 8 O 1.21695 * 119.99916 * 8.04272 * 7 6 2
9 9 N 1.34771 * 120.00010 * 188.04103 * 7 6 2
10 10 C 1.48160 * 127.02291 * 6.78828 * 9 7 6
11 11 C 1.55035 * 103.31543 * 140.98808 * 10 9 7
12 12 C 1.54186 * 102.72195 * 37.01104 * 11 10 9
13 13 C 1.47613 * 127.02504 * 186.79463 * 9 7 6
14 14 C 1.52498 * 110.01879 * 219.30912 * 12 11 10
15 15 C 1.53127 * 109.59071 * 298.36761 * 14 12 11
16 16 C 1.53191 * 109.29589 * 299.51836 * 15 14 12
17 17 N 1.46926 * 108.88527 * 55.06950 * 16 15 14
18 18 C 1.36940 * 120.67754 * 125.95057 * 17 16 15
19 19 H 1.07998 * 120.00312 * 326.24753 * 18 17 16
20 20 C 1.38817 * 119.99871 * 146.25266 * 18 17 16
21 21 N 1.31615 * 120.00234 * 345.38898 * 20 18 17
22 22 Si 1.86803 * 119.99777 * 165.39128 * 20 18 17
23 23 H 1.48503 * 109.47051 * 89.99884 * 22 20 18
24 24 H 1.48495 * 109.46852 * 209.99478 * 22 20 18
25 25 H 1.48494 * 109.47012 * 329.99949 * 22 20 18
26 26 C 1.47024 * 118.64265 * 305.96902 * 17 16 15
27 27 H 1.09003 * 109.47405 * 263.27390 * 1 2 3
28 28 H 1.09002 * 109.46977 * 23.27244 * 1 2 3
29 29 H 1.09002 * 109.47098 * 143.26868 * 1 2 3
30 30 H 1.08000 * 125.56225 * 359.97438 * 3 2 1
31 31 H 1.07999 * 126.07052 * 179.74732 * 4 3 2
32 32 H 1.07994 * 126.45859 * 180.02562 * 5 4 3
33 33 H 1.09004 * 110.65245 * 259.44456 * 10 9 7
34 34 H 1.09001 * 110.65094 * 22.36703 * 10 9 7
35 35 H 1.08997 * 110.76004 * 278.70450 * 11 10 9
36 36 H 1.08998 * 110.76276 * 155.31857 * 11 10 9
37 37 H 1.08999 * 109.97609 * 85.95541 * 13 9 7
38 38 H 1.09005 * 109.99865 * 324.70337 * 13 9 7
39 39 H 1.09005 * 109.44349 * 178.34329 * 14 12 11
40 40 H 1.08997 * 109.44788 * 58.40509 * 14 12 11
41 41 H 1.08999 * 109.49746 * 59.46033 * 15 14 12
42 42 H 1.08996 * 109.49927 * 179.56861 * 15 14 12
43 43 H 1.09000 * 109.56956 * 174.89183 * 16 15 14
44 44 H 1.08999 * 109.56597 * 295.24920 * 16 15 14
45 45 H 0.96991 * 120.00435 * 180.02562 * 21 20 18
46 46 H 1.09000 * 109.58834 * 172.58448 * 26 17 16
47 47 H 1.09002 * 109.58756 * 292.99762 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2555 1.1009 0.0000
4 6 3.5521 0.7092 -0.0059
5 6 3.5779 -0.6889 -0.0042
6 6 2.2678 -1.1182 0.0027
7 6 1.8123 -2.5125 0.0055
8 8 0.6315 -2.7672 -0.1419
9 7 2.7015 -3.5116 0.1712
10 6 4.1402 -3.3800 0.5001
11 6 4.3884 -4.5475 1.4896
12 6 3.4982 -5.6703 0.9202
13 6 2.4412 -4.9605 0.0620
14 6 2.8321 -6.4362 2.0583
15 6 3.9047 -7.0883 2.9352
16 6 4.7269 -8.0643 2.0877
17 7 5.2660 -7.3466 0.9246
18 6 6.6084 -7.3629 0.6542
19 1 7.3221 -7.3913 1.4642
20 6 7.0517 -7.3427 -0.6611
21 7 6.2122 -7.5961 -1.6426
22 14 8.8399 -6.9558 -1.0381
23 1 9.6263 -8.2155 -1.0536
24 1 8.9346 -6.2970 -2.3656
25 1 9.3804 -6.0477 0.0050
26 6 4.3349 -6.6103 0.0571
27 1 -0.3634 -0.1204 1.0206
28 1 -0.3633 0.9441 -0.4060
29 1 -0.3633 -0.8236 -0.6146
30 1 1.9082 2.1235 -0.0004
31 1 4.4132 1.3610 -0.0112
32 1 4.4582 -1.3145 -0.0074
33 1 4.7515 -3.4979 -0.3947
34 1 4.3394 -2.4201 0.9765
35 1 4.0705 -4.2752 2.4960
36 1 5.4372 -4.8444 1.4816
37 1 2.5309 -5.2776 -0.9770
38 1 1.4432 -5.1892 0.4360
39 1 2.1827 -7.2080 1.6450
40 1 2.2396 -5.7479 2.6609
41 1 4.5602 -6.3180 3.3416
42 1 3.4273 -7.6289 3.7524
43 1 5.5480 -8.4630 2.6835
44 1 4.0890 -8.8808 1.7494
45 1 6.5220 -7.5824 -2.5616
46 1 4.8978 -6.0306 -0.6744
47 1 3.6803 -7.3141 -0.4570
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001040075631.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:09:26
Heat of formation + Delta-G solvation = 50.230696 kcal
Electronic energy + Delta-G solvation = -27829.842849 eV
Core-core repulsion = 24207.394046 eV
Total energy + Delta-G solvation = -3622.448803 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.42997 -39.78598 -38.02902 -35.79439 -33.31365 -32.80936 -31.35322 -30.02886
-29.51768 -28.93450 -26.58321 -25.54561 -25.32253 -23.34883 -22.20443 -21.55572
-20.77663 -20.23310 -19.15427 -18.11098 -17.00607 -16.44758 -16.16712 -15.88784
-15.29169 -15.02050 -14.71124 -14.14563 -14.02291 -13.63403 -13.54431 -13.47518
-13.29662 -12.90786 -12.75005 -12.64185 -12.40086 -12.33205 -12.12745 -12.03995
-11.59295 -11.52744 -11.11970 -10.92506 -10.85669 -10.67704 -10.40931 -10.15133
-10.03206 -9.82297 -9.79134 -9.53760 -9.35582 -8.78980 -8.52025 -8.50216
-8.17585 -6.59526 -5.81907 -3.29779 1.50494 2.57010 2.70829 3.34728
3.37034 3.43154 3.44095 3.47446 4.46629 4.60359 4.68934 4.88670
5.05121 5.10520 5.12316 5.24709 5.33049 5.35211 5.43540 5.51112
5.57533 5.66354 5.68196 5.76450 5.83491 6.02276 6.05070 6.07009
6.12895 6.18901 6.26318 6.33316 6.38802 6.48693 6.53388 6.66074
6.74814 6.80440 6.87550 6.92961 6.96962 7.03028 7.14444 7.28760
7.54799 7.74726 7.79162 8.30503 8.45976 9.19514 9.81250 10.42776
11.26430
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.015643 B = 0.003994 C = 0.003478
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.462931 B = 7009.331635 C = 8049.659824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.414 5.414
3 C 0.007 3.993
4 C -0.209 4.209
5 C -0.152 4.152
6 C -0.043 4.043
7 C 0.602 3.398
8 O -0.563 6.563
9 N -0.602 5.602
10 C 0.083 3.917
11 C -0.113 4.113
12 C -0.094 4.094
13 C 0.120 3.880
14 C -0.093 4.093
15 C -0.134 4.134
16 C 0.144 3.856
17 N -0.587 5.587
18 C -0.257 4.257
19 H 0.062 0.938
20 C 0.011 3.989
21 N -0.899 5.899
22 Si 0.897 3.103
23 H -0.287 1.287
24 H -0.290 1.290
25 H -0.278 1.278
26 C 0.193 3.807
27 H 0.073 0.927
28 H 0.081 0.919
29 H 0.100 0.900
30 H 0.166 0.834
31 H 0.142 0.858
32 H 0.158 0.842
33 H 0.079 0.921
34 H 0.090 0.910
35 H 0.060 0.940
36 H 0.100 0.900
37 H 0.071 0.929
38 H 0.071 0.929
39 H 0.055 0.945
40 H 0.046 0.954
41 H 0.059 0.941
42 H 0.048 0.952
43 H 0.052 0.948
44 H 0.016 0.984
45 H 0.254 0.746
46 H 0.080 0.920
47 H 0.021 0.979
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.887 14.389 5.041 17.166
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 N -0.087 5.087
3 C -0.127 4.127
4 C -0.233 4.233
5 C -0.178 4.178
6 C -0.156 4.156
7 C 0.392 3.608
8 O -0.444 6.444
9 N -0.333 5.333
10 C -0.039 4.039
11 C -0.151 4.151
12 C -0.096 4.096
13 C -0.002 4.002
14 C -0.131 4.131
15 C -0.173 4.173
16 C 0.018 3.982
17 N -0.309 5.309
18 C -0.387 4.387
19 H 0.080 0.920
20 C -0.189 4.189
21 N -0.542 5.542
22 Si 0.727 3.273
23 H -0.214 1.214
24 H -0.216 1.216
25 H -0.203 1.203
26 C 0.066 3.934
27 H 0.092 0.908
28 H 0.100 0.900
29 H 0.119 0.881
30 H 0.184 0.816
31 H 0.159 0.841
32 H 0.176 0.824
33 H 0.097 0.903
34 H 0.108 0.892
35 H 0.078 0.922
36 H 0.119 0.881
37 H 0.089 0.911
38 H 0.090 0.910
39 H 0.074 0.926
40 H 0.064 0.936
41 H 0.078 0.922
42 H 0.067 0.933
43 H 0.071 0.929
44 H 0.034 0.966
45 H 0.064 0.936
46 H 0.098 0.902
47 H 0.039 0.961
Dipole moment (debyes) X Y Z Total
from point charges -8.933 14.261 4.756 17.487
hybrid contribution 0.883 0.266 -0.364 0.992
sum -8.049 14.527 4.392 17.179
Atomic orbital electron populations
1.22216 0.76319 1.04580 1.04119 1.43840 1.06714 1.05009 1.53168
1.21985 0.90810 0.91331 1.08616 1.20865 0.95932 0.95166 1.11359
1.21979 0.95258 0.95540 1.05015 1.20044 0.90459 0.87451 1.17648
1.16522 0.84509 0.82814 0.76908 1.90748 1.16202 1.84609 1.52831
1.48457 1.10265 1.06333 1.68270 1.23202 0.80575 1.00490 0.99667
1.22695 1.02414 0.93141 0.96838 1.21849 0.94923 0.96334 0.96517
1.22151 0.99530 0.77866 1.00653 1.21370 0.97167 0.98464 0.96124
1.22034 0.97793 0.99826 0.97630 1.20928 0.95458 0.92370 0.89461
1.43933 1.03750 1.55267 1.27960 1.19078 0.82055 1.46625 0.90936
0.92006 1.25176 0.97267 0.99872 0.96562 1.70003 1.34258 1.50976
0.98924 0.86389 0.85209 0.78223 0.77490 1.21374 1.21570 1.20316
1.20631 0.90451 0.91548 0.90748 0.90809 0.90015 0.88120 0.81642
0.84063 0.82444 0.90276 0.89166 0.92155 0.88120 0.91109 0.91023
0.92603 0.93574 0.92219 0.93302 0.92937 0.96604 0.93580 0.90173
0.96111
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.69 10.49 59.85 0.63 1.32 16
2 N -0.41 -5.19 3.16 -120.23 -0.38 -5.57 16
3 C 0.01 0.08 11.36 -16.91 -0.19 -0.11 16
4 C -0.21 -2.35 10.81 -39.98 -0.43 -2.78 16
5 C -0.15 -2.01 9.15 -39.12 -0.36 -2.37 16
6 C -0.04 -0.63 6.82 -81.98 -0.56 -1.19 16
7 C 0.60 10.28 7.83 -12.85 -0.10 10.18 16
8 O -0.56 -10.74 15.12 5.19 0.08 -10.66 16
9 N -0.60 -9.91 3.30 -171.38 -0.57 -10.48 16
10 C 0.08 1.24 5.58 -2.05 -0.01 1.23 16
11 C -0.11 -1.85 5.00 -25.04 -0.13 -1.97 16
12 C -0.09 -1.65 0.63 -154.07 -0.10 -1.75 16
13 C 0.12 2.08 6.31 -3.15 -0.02 2.06 16
14 C -0.09 -1.55 4.34 -26.92 -0.12 -1.66 16
15 C -0.13 -2.23 5.89 -26.57 -0.16 -2.39 16
16 C 0.14 2.91 6.50 -3.71 -0.02 2.88 16
17 N -0.59 -13.73 2.47 -172.60 -0.43 -14.16 16
18 C -0.26 -6.64 9.52 -15.06 -0.14 -6.79 16
19 H 0.06 1.59 7.87 -52.49 -0.41 1.17 16
20 C 0.01 0.29 4.93 -17.43 -0.09 0.20 16
21 N -0.90 -25.06 11.51 55.49 0.64 -24.42 16
22 Si 0.90 20.76 29.58 -169.99 -5.03 15.73 16
23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
26 C 0.19 4.24 3.59 -3.96 -0.01 4.23 16
27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16
29 H 0.10 1.21 6.57 -51.93 -0.34 0.86 16
30 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16
31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16
32 H 0.16 1.93 5.02 -52.49 -0.26 1.66 16
33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
34 H 0.09 1.18 4.98 -51.93 -0.26 0.92 16
35 H 0.06 0.93 7.63 -51.93 -0.40 0.54 16
36 H 0.10 1.87 7.48 -51.93 -0.39 1.48 16
37 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16
38 H 0.07 1.24 7.54 -51.93 -0.39 0.85 16
39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
41 H 0.06 1.01 7.13 -51.93 -0.37 0.64 16
42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
43 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16
44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16
46 H 0.08 1.97 6.48 -51.93 -0.34 1.63 16
47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
LS Contribution 361.06 15.07 5.44 5.44
Total: -1.00 -30.58 361.06 -9.38 -39.96
By element:
Atomic # 1 Polarization: 10.42 SS G_CDS: -7.33 Total: 3.09 kcal
Atomic # 6 Polarization: 2.89 SS G_CDS: -1.81 Total: 1.08 kcal
Atomic # 7 Polarization: -53.90 SS G_CDS: -0.73 Total: -54.64 kcal
Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -30.58 -9.38 -39.96 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040075631.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.189 kcal
(2) G-P(sol) polarization free energy of solvation -30.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.612 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.231 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds