Wall clock time and date at job start Tue Mar 31 2020 11:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35531 * 125.68181 * 2 1 4 4 C 1.35448 * 108.87303 * 180.26211 * 3 2 1 5 5 C 1.39834 * 107.86637 * 359.76441 * 4 3 2 6 6 C 1.37658 * 125.67659 * 179.86272 * 2 1 3 7 7 C 1.46683 * 126.23181 * 0.02562 * 6 2 1 8 8 O 1.21695 * 119.99916 * 8.04272 * 7 6 2 9 9 N 1.34771 * 120.00010 * 188.04103 * 7 6 2 10 10 C 1.48160 * 127.02291 * 6.78828 * 9 7 6 11 11 C 1.55035 * 103.31543 * 140.98808 * 10 9 7 12 12 C 1.54186 * 102.72195 * 37.01104 * 11 10 9 13 13 C 1.47613 * 127.02504 * 186.79463 * 9 7 6 14 14 C 1.52498 * 110.01879 * 219.30912 * 12 11 10 15 15 C 1.53127 * 109.59071 * 298.36761 * 14 12 11 16 16 C 1.53191 * 109.29589 * 299.51836 * 15 14 12 17 17 N 1.46926 * 108.88527 * 55.06950 * 16 15 14 18 18 C 1.36940 * 120.67754 * 125.95057 * 17 16 15 19 19 H 1.07998 * 120.00312 * 326.24753 * 18 17 16 20 20 C 1.38817 * 119.99871 * 146.25266 * 18 17 16 21 21 N 1.31615 * 120.00234 * 345.38898 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 165.39128 * 20 18 17 23 23 H 1.48503 * 109.47051 * 89.99884 * 22 20 18 24 24 H 1.48495 * 109.46852 * 209.99478 * 22 20 18 25 25 H 1.48494 * 109.47012 * 329.99949 * 22 20 18 26 26 C 1.47024 * 118.64265 * 305.96902 * 17 16 15 27 27 H 1.09003 * 109.47405 * 263.27390 * 1 2 3 28 28 H 1.09002 * 109.46977 * 23.27244 * 1 2 3 29 29 H 1.09002 * 109.47098 * 143.26868 * 1 2 3 30 30 H 1.08000 * 125.56225 * 359.97438 * 3 2 1 31 31 H 1.07999 * 126.07052 * 179.74732 * 4 3 2 32 32 H 1.07994 * 126.45859 * 180.02562 * 5 4 3 33 33 H 1.09004 * 110.65245 * 259.44456 * 10 9 7 34 34 H 1.09001 * 110.65094 * 22.36703 * 10 9 7 35 35 H 1.08997 * 110.76004 * 278.70450 * 11 10 9 36 36 H 1.08998 * 110.76276 * 155.31857 * 11 10 9 37 37 H 1.08999 * 109.97609 * 85.95541 * 13 9 7 38 38 H 1.09005 * 109.99865 * 324.70337 * 13 9 7 39 39 H 1.09005 * 109.44349 * 178.34329 * 14 12 11 40 40 H 1.08997 * 109.44788 * 58.40509 * 14 12 11 41 41 H 1.08999 * 109.49746 * 59.46033 * 15 14 12 42 42 H 1.08996 * 109.49927 * 179.56861 * 15 14 12 43 43 H 1.09000 * 109.56956 * 174.89183 * 16 15 14 44 44 H 1.08999 * 109.56597 * 295.24920 * 16 15 14 45 45 H 0.96991 * 120.00435 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58834 * 172.58448 * 26 17 16 47 47 H 1.09002 * 109.58756 * 292.99762 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0059 5 6 3.5779 -0.6889 -0.0042 6 6 2.2678 -1.1182 0.0027 7 6 1.8123 -2.5125 0.0055 8 8 0.6315 -2.7672 -0.1419 9 7 2.7015 -3.5116 0.1712 10 6 4.1402 -3.3800 0.5001 11 6 4.3884 -4.5475 1.4896 12 6 3.4982 -5.6703 0.9202 13 6 2.4412 -4.9605 0.0620 14 6 2.8321 -6.4362 2.0583 15 6 3.9047 -7.0883 2.9352 16 6 4.7269 -8.0643 2.0877 17 7 5.2660 -7.3466 0.9246 18 6 6.6084 -7.3629 0.6542 19 1 7.3221 -7.3913 1.4642 20 6 7.0517 -7.3427 -0.6611 21 7 6.2122 -7.5961 -1.6426 22 14 8.8399 -6.9558 -1.0381 23 1 9.6263 -8.2155 -1.0536 24 1 8.9346 -6.2970 -2.3656 25 1 9.3804 -6.0477 0.0050 26 6 4.3349 -6.6103 0.0571 27 1 -0.3634 -0.1204 1.0206 28 1 -0.3633 0.9441 -0.4060 29 1 -0.3633 -0.8236 -0.6146 30 1 1.9082 2.1235 -0.0004 31 1 4.4132 1.3610 -0.0112 32 1 4.4582 -1.3145 -0.0074 33 1 4.7515 -3.4979 -0.3947 34 1 4.3394 -2.4201 0.9765 35 1 4.0705 -4.2752 2.4960 36 1 5.4372 -4.8444 1.4816 37 1 2.5309 -5.2776 -0.9770 38 1 1.4432 -5.1892 0.4360 39 1 2.1827 -7.2080 1.6450 40 1 2.2396 -5.7479 2.6609 41 1 4.5602 -6.3180 3.3416 42 1 3.4273 -7.6289 3.7524 43 1 5.5480 -8.4630 2.6835 44 1 4.0890 -8.8808 1.7494 45 1 6.5220 -7.5824 -2.5616 46 1 4.8978 -6.0306 -0.6744 47 1 3.6803 -7.3141 -0.4570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040075631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:26 Heat of formation + Delta-G solvation = 50.230696 kcal Electronic energy + Delta-G solvation = -27829.842849 eV Core-core repulsion = 24207.394046 eV Total energy + Delta-G solvation = -3622.448803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42997 -39.78598 -38.02902 -35.79439 -33.31365 -32.80936 -31.35322 -30.02886 -29.51768 -28.93450 -26.58321 -25.54561 -25.32253 -23.34883 -22.20443 -21.55572 -20.77663 -20.23310 -19.15427 -18.11098 -17.00607 -16.44758 -16.16712 -15.88784 -15.29169 -15.02050 -14.71124 -14.14563 -14.02291 -13.63403 -13.54431 -13.47518 -13.29662 -12.90786 -12.75005 -12.64185 -12.40086 -12.33205 -12.12745 -12.03995 -11.59295 -11.52744 -11.11970 -10.92506 -10.85669 -10.67704 -10.40931 -10.15133 -10.03206 -9.82297 -9.79134 -9.53760 -9.35582 -8.78980 -8.52025 -8.50216 -8.17585 -6.59526 -5.81907 -3.29779 1.50494 2.57010 2.70829 3.34728 3.37034 3.43154 3.44095 3.47446 4.46629 4.60359 4.68934 4.88670 5.05121 5.10520 5.12316 5.24709 5.33049 5.35211 5.43540 5.51112 5.57533 5.66354 5.68196 5.76450 5.83491 6.02276 6.05070 6.07009 6.12895 6.18901 6.26318 6.33316 6.38802 6.48693 6.53388 6.66074 6.74814 6.80440 6.87550 6.92961 6.96962 7.03028 7.14444 7.28760 7.54799 7.74726 7.79162 8.30503 8.45976 9.19514 9.81250 10.42776 11.26430 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.003994 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.462931 B = 7009.331635 C = 8049.659824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.414 5.414 3 C 0.007 3.993 4 C -0.209 4.209 5 C -0.152 4.152 6 C -0.043 4.043 7 C 0.602 3.398 8 O -0.563 6.563 9 N -0.602 5.602 10 C 0.083 3.917 11 C -0.113 4.113 12 C -0.094 4.094 13 C 0.120 3.880 14 C -0.093 4.093 15 C -0.134 4.134 16 C 0.144 3.856 17 N -0.587 5.587 18 C -0.257 4.257 19 H 0.062 0.938 20 C 0.011 3.989 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.193 3.807 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.016 0.984 45 H 0.254 0.746 46 H 0.080 0.920 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 14.389 5.041 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.087 5.087 3 C -0.127 4.127 4 C -0.233 4.233 5 C -0.178 4.178 6 C -0.156 4.156 7 C 0.392 3.608 8 O -0.444 6.444 9 N -0.333 5.333 10 C -0.039 4.039 11 C -0.151 4.151 12 C -0.096 4.096 13 C -0.002 4.002 14 C -0.131 4.131 15 C -0.173 4.173 16 C 0.018 3.982 17 N -0.309 5.309 18 C -0.387 4.387 19 H 0.080 0.920 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.727 3.273 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.066 3.934 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.176 0.824 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.933 14.261 4.756 17.487 hybrid contribution 0.883 0.266 -0.364 0.992 sum -8.049 14.527 4.392 17.179 Atomic orbital electron populations 1.22216 0.76319 1.04580 1.04119 1.43840 1.06714 1.05009 1.53168 1.21985 0.90810 0.91331 1.08616 1.20865 0.95932 0.95166 1.11359 1.21979 0.95258 0.95540 1.05015 1.20044 0.90459 0.87451 1.17648 1.16522 0.84509 0.82814 0.76908 1.90748 1.16202 1.84609 1.52831 1.48457 1.10265 1.06333 1.68270 1.23202 0.80575 1.00490 0.99667 1.22695 1.02414 0.93141 0.96838 1.21849 0.94923 0.96334 0.96517 1.22151 0.99530 0.77866 1.00653 1.21370 0.97167 0.98464 0.96124 1.22034 0.97793 0.99826 0.97630 1.20928 0.95458 0.92370 0.89461 1.43933 1.03750 1.55267 1.27960 1.19078 0.82055 1.46625 0.90936 0.92006 1.25176 0.97267 0.99872 0.96562 1.70003 1.34258 1.50976 0.98924 0.86389 0.85209 0.78223 0.77490 1.21374 1.21570 1.20316 1.20631 0.90451 0.91548 0.90748 0.90809 0.90015 0.88120 0.81642 0.84063 0.82444 0.90276 0.89166 0.92155 0.88120 0.91109 0.91023 0.92603 0.93574 0.92219 0.93302 0.92937 0.96604 0.93580 0.90173 0.96111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.49 59.85 0.63 1.32 16 2 N -0.41 -5.19 3.16 -120.23 -0.38 -5.57 16 3 C 0.01 0.08 11.36 -16.91 -0.19 -0.11 16 4 C -0.21 -2.35 10.81 -39.98 -0.43 -2.78 16 5 C -0.15 -2.01 9.15 -39.12 -0.36 -2.37 16 6 C -0.04 -0.63 6.82 -81.98 -0.56 -1.19 16 7 C 0.60 10.28 7.83 -12.85 -0.10 10.18 16 8 O -0.56 -10.74 15.12 5.19 0.08 -10.66 16 9 N -0.60 -9.91 3.30 -171.38 -0.57 -10.48 16 10 C 0.08 1.24 5.58 -2.05 -0.01 1.23 16 11 C -0.11 -1.85 5.00 -25.04 -0.13 -1.97 16 12 C -0.09 -1.65 0.63 -154.07 -0.10 -1.75 16 13 C 0.12 2.08 6.31 -3.15 -0.02 2.06 16 14 C -0.09 -1.55 4.34 -26.92 -0.12 -1.66 16 15 C -0.13 -2.23 5.89 -26.57 -0.16 -2.39 16 16 C 0.14 2.91 6.50 -3.71 -0.02 2.88 16 17 N -0.59 -13.73 2.47 -172.60 -0.43 -14.16 16 18 C -0.26 -6.64 9.52 -15.06 -0.14 -6.79 16 19 H 0.06 1.59 7.87 -52.49 -0.41 1.17 16 20 C 0.01 0.29 4.93 -17.43 -0.09 0.20 16 21 N -0.90 -25.06 11.51 55.49 0.64 -24.42 16 22 Si 0.90 20.76 29.58 -169.99 -5.03 15.73 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.19 4.24 3.59 -3.96 -0.01 4.23 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.10 1.21 6.57 -51.93 -0.34 0.86 16 30 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.16 1.93 5.02 -52.49 -0.26 1.66 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.18 4.98 -51.93 -0.26 0.92 16 35 H 0.06 0.93 7.63 -51.93 -0.40 0.54 16 36 H 0.10 1.87 7.48 -51.93 -0.39 1.48 16 37 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 38 H 0.07 1.24 7.54 -51.93 -0.39 0.85 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.01 7.13 -51.93 -0.37 0.64 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 1.97 6.48 -51.93 -0.34 1.63 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -30.58 361.06 -9.38 -39.96 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.33 Total: 3.09 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.81 Total: 1.08 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.73 Total: -54.64 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.58 -9.38 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040075631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.189 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds