Wall clock time and date at job start Tue Mar 31 2020 11:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35531 * 125.68181 * 2 1 4 4 C 1.35448 * 108.87303 * 180.26211 * 3 2 1 5 5 C 1.39834 * 107.86637 * 359.76441 * 4 3 2 6 6 C 1.37658 * 125.67659 * 179.86272 * 2 1 3 7 7 C 1.46683 * 126.23181 * 0.02562 * 6 2 1 8 8 O 1.21695 * 119.99916 * 8.04272 * 7 6 2 9 9 N 1.34771 * 120.00010 * 188.04103 * 7 6 2 10 10 C 1.48160 * 127.02291 * 6.78828 * 9 7 6 11 11 C 1.55035 * 103.31543 * 140.98808 * 10 9 7 12 12 C 1.54186 * 102.72195 * 37.01104 * 11 10 9 13 13 C 1.47613 * 127.02504 * 186.79463 * 9 7 6 14 14 C 1.52498 * 110.01879 * 219.30912 * 12 11 10 15 15 C 1.53127 * 109.59071 * 298.36761 * 14 12 11 16 16 C 1.53191 * 109.29589 * 299.51836 * 15 14 12 17 17 N 1.46926 * 108.88527 * 55.06950 * 16 15 14 18 18 C 1.36940 * 120.67754 * 125.95057 * 17 16 15 19 19 H 1.07998 * 120.00312 * 326.24753 * 18 17 16 20 20 C 1.38817 * 119.99871 * 146.25266 * 18 17 16 21 21 N 1.31615 * 120.00234 * 345.38898 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 165.39128 * 20 18 17 23 23 H 1.48503 * 109.47051 * 89.99884 * 22 20 18 24 24 H 1.48495 * 109.46852 * 209.99478 * 22 20 18 25 25 H 1.48494 * 109.47012 * 329.99949 * 22 20 18 26 26 C 1.47024 * 118.64265 * 305.96902 * 17 16 15 27 27 H 1.09003 * 109.47405 * 263.27390 * 1 2 3 28 28 H 1.09002 * 109.46977 * 23.27244 * 1 2 3 29 29 H 1.09002 * 109.47098 * 143.26868 * 1 2 3 30 30 H 1.08000 * 125.56225 * 359.97438 * 3 2 1 31 31 H 1.07999 * 126.07052 * 179.74732 * 4 3 2 32 32 H 1.07994 * 126.45859 * 180.02562 * 5 4 3 33 33 H 1.09004 * 110.65245 * 259.44456 * 10 9 7 34 34 H 1.09001 * 110.65094 * 22.36703 * 10 9 7 35 35 H 1.08997 * 110.76004 * 278.70450 * 11 10 9 36 36 H 1.08998 * 110.76276 * 155.31857 * 11 10 9 37 37 H 1.08999 * 109.97609 * 85.95541 * 13 9 7 38 38 H 1.09005 * 109.99865 * 324.70337 * 13 9 7 39 39 H 1.09005 * 109.44349 * 178.34329 * 14 12 11 40 40 H 1.08997 * 109.44788 * 58.40509 * 14 12 11 41 41 H 1.08999 * 109.49746 * 59.46033 * 15 14 12 42 42 H 1.08996 * 109.49927 * 179.56861 * 15 14 12 43 43 H 1.09000 * 109.56956 * 174.89183 * 16 15 14 44 44 H 1.08999 * 109.56597 * 295.24920 * 16 15 14 45 45 H 0.96991 * 120.00435 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58834 * 172.58448 * 26 17 16 47 47 H 1.09002 * 109.58756 * 292.99762 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0059 5 6 3.5779 -0.6889 -0.0042 6 6 2.2678 -1.1182 0.0027 7 6 1.8123 -2.5125 0.0055 8 8 0.6315 -2.7672 -0.1419 9 7 2.7015 -3.5116 0.1712 10 6 4.1402 -3.3800 0.5001 11 6 4.3884 -4.5475 1.4896 12 6 3.4982 -5.6703 0.9202 13 6 2.4412 -4.9605 0.0620 14 6 2.8321 -6.4362 2.0583 15 6 3.9047 -7.0883 2.9352 16 6 4.7269 -8.0643 2.0877 17 7 5.2660 -7.3466 0.9246 18 6 6.6084 -7.3629 0.6542 19 1 7.3221 -7.3913 1.4642 20 6 7.0517 -7.3427 -0.6611 21 7 6.2122 -7.5961 -1.6426 22 14 8.8399 -6.9558 -1.0381 23 1 9.6263 -8.2155 -1.0536 24 1 8.9346 -6.2970 -2.3656 25 1 9.3804 -6.0477 0.0050 26 6 4.3349 -6.6103 0.0571 27 1 -0.3634 -0.1204 1.0206 28 1 -0.3633 0.9441 -0.4060 29 1 -0.3633 -0.8236 -0.6146 30 1 1.9082 2.1235 -0.0004 31 1 4.4132 1.3610 -0.0112 32 1 4.4582 -1.3145 -0.0074 33 1 4.7515 -3.4979 -0.3947 34 1 4.3394 -2.4201 0.9765 35 1 4.0705 -4.2752 2.4960 36 1 5.4372 -4.8444 1.4816 37 1 2.5309 -5.2776 -0.9770 38 1 1.4432 -5.1892 0.4360 39 1 2.1827 -7.2080 1.6450 40 1 2.2396 -5.7479 2.6609 41 1 4.5602 -6.3180 3.3416 42 1 3.4273 -7.6289 3.7524 43 1 5.5480 -8.4630 2.6835 44 1 4.0890 -8.8808 1.7494 45 1 6.5220 -7.5824 -2.5616 46 1 4.8978 -6.0306 -0.6744 47 1 3.6803 -7.3141 -0.4570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040075631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:25 Heat of formation + Delta-G solvation = 33.744277 kcal Electronic energy + Delta-G solvation = -27830.557754 eV Core-core repulsion = 24207.394046 eV Total energy + Delta-G solvation = -3623.163707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41518 -41.13749 -39.42471 -37.31179 -34.94119 -33.88544 -32.81025 -31.78200 -30.73709 -30.16359 -27.42131 -27.25081 -26.89575 -24.66682 -23.91587 -22.79569 -21.98297 -21.43148 -20.28031 -19.58487 -18.55697 -17.87761 -17.41370 -17.17709 -16.64716 -16.25631 -16.08037 -15.73139 -15.48616 -15.05705 -14.93768 -14.77298 -14.41121 -14.20711 -14.11332 -14.00231 -13.70472 -13.44020 -13.24320 -13.09292 -12.97464 -12.90694 -12.85415 -12.61871 -12.49372 -12.25360 -12.11854 -11.84045 -11.62390 -11.29909 -11.18119 -11.04039 -10.96067 -10.50773 -9.85323 -9.67464 -9.16198 -8.54063 -7.82898 -5.33762 0.44640 1.49420 1.52004 1.55431 1.60738 1.82594 2.27507 2.30590 2.54769 3.30603 3.40195 3.68334 3.72745 3.86372 3.96468 4.00036 4.19164 4.25449 4.29874 4.36513 4.36721 4.43880 4.51685 4.54524 4.61309 4.63452 4.71665 4.76166 4.78417 4.92879 4.94302 5.03882 5.13068 5.17107 5.20712 5.27339 5.29061 5.36392 5.42227 5.51091 5.61615 5.71437 5.74511 5.83938 5.98134 6.33781 6.46328 6.47185 7.02201 7.20791 7.89646 8.46423 9.23004 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.003994 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.462931 B = 7009.331635 C = 8049.659824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.421 5.421 3 C 0.029 3.971 4 C -0.221 4.221 5 C -0.152 4.152 6 C -0.085 4.085 7 C 0.597 3.403 8 O -0.593 6.593 9 N -0.604 5.604 10 C 0.090 3.910 11 C -0.104 4.104 12 C -0.084 4.084 13 C 0.126 3.874 14 C -0.091 4.091 15 C -0.120 4.120 16 C 0.138 3.862 17 N -0.602 5.602 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.039 4.039 21 N -0.933 5.933 22 Si 0.959 3.041 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.208 3.792 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.209 0.791 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.006 0.994 45 H 0.248 0.752 46 H 0.048 0.952 47 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 17.292 6.864 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.094 5.094 3 C -0.107 4.107 4 C -0.244 4.244 5 C -0.178 4.178 6 C -0.198 4.198 7 C 0.390 3.610 8 O -0.476 6.476 9 N -0.335 5.335 10 C -0.031 4.031 11 C -0.142 4.142 12 C -0.087 4.087 13 C 0.003 3.997 14 C -0.129 4.129 15 C -0.159 4.159 16 C 0.013 3.987 17 N -0.325 5.325 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.236 4.236 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.189 1.189 26 C 0.082 3.918 27 H 0.096 0.904 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.226 0.774 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -8.822 17.161 6.616 20.398 hybrid contribution 0.823 -0.616 -0.935 1.389 sum -8.000 16.545 5.681 19.235 Atomic orbital electron populations 1.22322 0.75250 1.05629 1.04146 1.44112 1.07595 1.04873 1.52825 1.22748 0.90350 0.92416 1.05171 1.21234 0.97385 0.94388 1.11442 1.22163 0.94679 0.96920 1.04080 1.19847 0.91637 0.86906 1.21382 1.16952 0.84097 0.83878 0.76114 1.90719 1.17379 1.85241 1.54298 1.48465 1.10791 1.05776 1.68440 1.23192 0.79637 1.01201 0.99097 1.22581 1.00735 0.92851 0.98032 1.21613 0.94721 0.96029 0.96312 1.21960 0.99351 0.78913 0.99526 1.21364 0.97190 0.98618 0.95683 1.21898 0.97305 0.99158 0.97557 1.21082 0.95839 0.92963 0.88802 1.44167 1.03382 1.56111 1.28807 1.19380 0.83350 1.45211 0.91009 0.91761 1.25853 1.00774 1.00429 0.96496 1.70162 1.35953 1.52854 0.98865 0.85419 0.80939 0.77862 0.77099 1.21581 1.22214 1.18870 1.20304 0.89720 0.91063 0.90714 0.90433 0.86142 0.90742 0.77383 0.81625 0.82273 0.91324 0.86654 0.90257 0.90142 0.92972 0.90941 0.92962 0.91463 0.91798 0.90304 0.92817 0.97557 0.94274 0.93303 0.99428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 10.49 127.77 1.34 2.56 16 2 N -0.42 -9.61 3.16 -534.31 -1.69 -11.30 16 3 C 0.03 0.49 11.36 83.48 0.95 1.44 16 4 C -0.22 -4.23 10.81 22.01 0.24 -3.99 16 5 C -0.15 -3.74 9.15 22.57 0.21 -3.54 16 6 C -0.09 -2.45 6.82 40.35 0.28 -2.17 16 7 C 0.60 20.54 7.83 86.45 0.68 21.21 16 8 O -0.59 -23.14 15.12 -4.33 -0.07 -23.20 16 9 N -0.60 -20.09 3.30 -814.34 -2.68 -22.77 16 10 C 0.09 2.68 5.58 86.76 0.48 3.16 16 11 C -0.10 -3.34 5.00 31.69 0.16 -3.18 16 12 C -0.08 -3.01 0.63 -51.90 -0.03 -3.05 16 13 C 0.13 4.47 6.31 86.35 0.54 5.02 16 14 C -0.09 -2.89 4.34 30.47 0.13 -2.76 16 15 C -0.12 -3.79 5.89 30.70 0.18 -3.61 16 16 C 0.14 5.56 6.50 86.36 0.56 6.12 16 17 N -0.60 -28.77 2.47 -699.99 -1.73 -30.50 16 18 C -0.26 -13.58 9.52 84.03 0.80 -12.78 16 19 H 0.06 3.29 7.87 -2.91 -0.02 3.27 16 20 C -0.04 -2.12 4.93 84.86 0.42 -1.70 16 21 N -0.93 -54.20 11.51 21.65 0.25 -53.95 16 22 Si 0.96 43.37 29.58 68.60 2.03 45.40 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 C 0.21 9.60 3.59 86.14 0.31 9.91 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.12 1.18 8.12 -2.39 -0.02 1.16 16 29 H 0.07 1.77 6.57 -2.39 -0.02 1.76 16 30 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.16 3.68 5.02 -2.91 -0.01 3.67 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.12 2.85 4.98 -2.39 -0.01 2.84 16 35 H 0.08 2.26 7.63 -2.39 -0.02 2.25 16 36 H 0.08 2.96 7.48 -2.39 -0.02 2.95 16 37 H 0.05 2.02 7.67 -2.39 -0.02 2.01 16 38 H 0.07 2.56 7.54 -2.38 -0.02 2.54 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.99 7.13 -2.39 -0.02 1.97 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 44 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.05 2.54 6.48 -2.39 -0.02 2.52 16 47 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 Total: -1.00 -68.87 361.06 4.31 -64.56 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.96 Total: 19.12 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 7.24 Total: 12.65 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.85 Total: -118.53 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.87 4.31 -64.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040075631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.307 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds