Wall clock time and date at job start Tue Mar 31 2020 11:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36447 * 124.85554 * 2 1 4 4 C 1.34488 * 108.85969 * 179.73416 * 3 2 1 5 5 C 1.46694 * 106.32922 * 0.43214 * 4 3 2 6 6 C 1.47260 * 126.93924 * 179.82987 * 5 4 3 7 7 O 1.21623 * 119.99907 * 171.84110 * 6 5 4 8 8 N 1.34776 * 120.00224 * 351.84550 * 6 5 4 9 9 C 1.48156 * 127.02881 * 182.23619 * 8 6 5 10 10 C 1.55042 * 103.31685 * 140.99265 * 9 8 6 11 11 C 1.54151 * 102.73412 * 36.99232 * 10 9 8 12 12 C 1.47616 * 127.02630 * 2.25327 * 8 6 5 13 13 C 1.52502 * 110.05746 * 97.47148 * 11 10 9 14 14 C 1.53123 * 109.60440 * 181.74280 * 13 11 10 15 15 C 1.53195 * 109.28896 * 299.48365 * 14 13 11 16 16 N 1.47194 * 108.96415 * 55.08679 * 15 14 13 17 17 C 1.36936 * 120.85587 * 125.93377 * 16 15 14 18 18 H 1.08005 * 120.00439 * 211.16269 * 17 16 15 19 19 C 1.38818 * 120.00287 * 31.16443 * 17 16 15 20 20 N 1.31616 * 119.99611 * 10.09505 * 19 17 16 21 21 Si 1.86797 * 120.00158 * 190.09286 * 19 17 16 22 22 H 1.48493 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47239 * 120.00303 * 21 19 17 24 24 H 1.48506 * 109.47146 * 239.99941 * 21 19 17 25 25 C 1.47033 * 118.46723 * 306.06114 * 16 15 14 26 26 C 1.34668 * 124.84910 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46853 * 269.98051 * 1 2 3 28 28 H 1.09001 * 109.47031 * 29.97947 * 1 2 3 29 29 H 1.08994 * 109.47304 * 149.97981 * 1 2 3 30 30 H 1.07997 * 125.56543 * 0.02562 * 3 2 1 31 31 H 1.07996 * 126.83432 * 180.26454 * 4 3 2 32 32 H 1.09000 * 110.65008 * 259.45075 * 9 8 6 33 33 H 1.08999 * 110.65130 * 22.36894 * 9 8 6 34 34 H 1.08998 * 110.76187 * 278.67888 * 10 9 8 35 35 H 1.09006 * 110.75574 * 155.30239 * 10 9 8 36 36 H 1.09001 * 109.96986 * 85.98707 * 12 8 6 37 37 H 1.08999 * 109.97048 * 324.71657 * 12 8 6 38 38 H 1.09001 * 109.44343 * 301.78115 * 13 11 10 39 39 H 1.08998 * 109.44550 * 61.72815 * 13 11 10 40 40 H 1.09003 * 109.50332 * 59.43034 * 14 13 11 41 41 H 1.09000 * 109.50402 * 179.50362 * 14 13 11 42 42 H 1.08999 * 109.56709 * 174.88973 * 15 14 13 43 43 H 1.09001 * 109.56426 * 295.12471 * 15 14 13 44 44 H 0.96998 * 119.99911 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58398 * 292.86075 * 25 16 15 46 46 H 1.09004 * 109.58659 * 172.58262 * 25 16 15 47 47 H 1.07997 * 125.80180 * 359.95852 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 0.0059 5 6 3.5462 -0.7178 -0.0008 6 6 4.7283 -1.5959 -0.0014 7 8 4.5943 -2.7962 0.1422 8 7 5.9587 -1.0695 -0.1609 9 6 7.2421 -1.8064 -0.2320 10 6 8.0337 -1.0405 -1.3231 11 6 7.6308 0.4256 -1.0691 12 6 6.3032 0.3591 -0.3002 13 6 8.6958 1.1227 -0.2291 14 6 8.2648 2.5646 0.0534 15 6 8.1038 3.3138 -1.2731 16 7 7.1665 2.5711 -2.1313 17 6 6.0669 3.1863 -2.6674 18 1 5.1645 2.6203 -2.8455 19 6 6.1119 4.5376 -2.9821 20 7 7.2594 5.1817 -2.9546 21 14 4.5442 5.4416 -3.4447 22 1 3.3979 4.4986 -3.4016 23 1 4.3103 6.5501 -2.4847 24 1 4.6781 5.9948 -4.8164 25 6 7.4361 1.1505 -2.3983 26 6 2.2345 -1.1052 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.8829 2.1372 0.0004 31 1 4.3981 1.4016 0.0114 32 1 7.7641 -1.7624 0.7239 33 1 7.0750 -2.8415 -0.5300 34 1 7.7257 -1.3588 -2.3190 35 1 9.1069 -1.1752 -1.1879 36 1 6.4202 0.8116 0.6845 37 1 5.5233 0.8774 -0.8582 38 1 8.8206 0.5898 0.7136 39 1 9.6410 1.1265 -0.7719 40 1 7.3147 2.5624 0.5877 41 1 9.0229 3.0585 0.6612 42 1 7.7102 4.3123 -1.0830 43 1 9.0717 3.3911 -1.7684 44 1 7.2910 6.1258 -3.1748 45 1 8.3394 1.0571 -3.0012 46 1 6.5931 0.7129 -2.9331 47 1 1.8767 -2.1241 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040158225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:31 Heat of formation + Delta-G solvation = 50.102461 kcal Electronic energy + Delta-G solvation = -28125.760014 eV Core-core repulsion = 24503.305651 eV Total energy + Delta-G solvation = -3622.454363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12463 -39.80742 -37.96729 -35.57141 -33.11296 -32.70958 -30.96971 -30.47357 -29.05821 -28.91052 -26.54898 -25.64968 -25.23674 -23.36676 -22.10136 -21.29123 -20.63003 -19.92033 -18.92508 -18.12614 -17.08611 -16.55660 -15.90327 -15.63748 -15.28260 -14.94856 -14.80077 -14.05727 -13.93296 -13.73890 -13.61051 -13.30842 -13.01597 -12.80914 -12.77089 -12.64372 -12.37412 -12.12446 -12.06081 -11.91967 -11.62132 -11.47941 -11.09263 -11.01292 -10.74754 -10.61574 -10.36473 -10.22563 -10.09959 -9.85864 -9.56004 -9.41417 -9.35368 -8.49706 -8.46618 -8.35457 -8.06854 -6.59552 -5.77180 -3.24840 1.95933 2.64016 2.85672 3.34622 3.42657 3.44163 3.46810 3.85994 4.47319 4.61912 4.88039 4.95578 4.96904 4.99830 5.13412 5.20110 5.24329 5.40660 5.41992 5.52206 5.59389 5.68029 5.71423 5.80294 5.89591 6.05552 6.09135 6.10352 6.11719 6.22097 6.26468 6.33584 6.47517 6.54532 6.66025 6.67528 6.73437 6.86179 6.92072 6.94814 6.99398 7.18295 7.32144 7.43119 7.73610 7.80900 7.97913 8.48431 8.61423 9.23493 9.84782 10.43966 11.30558 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.006104 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.340702 B = 4586.157295 C = 6902.959289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.165 4.165 5 C -0.229 4.229 6 C 0.611 3.389 7 O -0.570 6.570 8 N -0.614 5.614 9 C 0.108 3.892 10 C -0.126 4.126 11 C -0.085 4.085 12 C 0.110 3.890 13 C -0.094 4.094 14 C -0.146 4.146 15 C 0.170 3.830 16 N -0.590 5.590 17 C -0.246 4.246 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.160 3.840 26 C 0.067 3.933 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.016 0.984 44 H 0.252 0.748 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -9.044 7.202 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.188 4.188 5 C -0.240 4.240 6 C 0.403 3.597 7 O -0.451 6.451 8 N -0.346 5.346 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.088 4.088 12 C -0.012 4.012 13 C -0.132 4.132 14 C -0.185 4.185 15 C 0.044 3.956 16 N -0.312 5.312 17 C -0.376 4.376 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.034 3.966 26 C -0.069 4.069 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.202 -9.469 7.234 13.923 hybrid contribution -0.707 0.732 -0.295 1.060 sum -7.909 -8.737 6.939 13.676 Atomic orbital electron populations 1.22070 0.77294 1.04514 1.03232 1.43609 1.06536 1.06012 1.56418 1.21853 0.90696 0.91138 1.10962 1.22778 0.96803 0.93376 1.05861 1.20256 0.92151 0.93570 1.17982 1.16978 0.81119 0.86323 0.75324 1.90714 1.86057 1.15404 1.52956 1.48653 1.05240 1.09137 1.71611 1.22393 0.83685 0.96725 0.98642 1.22753 0.99740 0.95102 0.98831 1.21631 0.94302 0.94163 0.98702 1.22623 0.97981 0.80583 1.00045 1.21390 0.97338 0.96474 0.97956 1.22260 0.99885 0.95432 1.00928 1.20839 0.92443 0.96024 0.86272 1.44092 1.27421 1.04915 1.54783 1.19192 0.90185 0.92684 1.35546 0.91747 1.25129 0.96306 0.98399 0.99542 1.69974 1.23081 1.09292 1.52539 0.86261 0.83200 0.79758 0.77826 1.20229 1.21679 1.21798 1.20879 0.98228 0.86216 0.91308 1.21643 0.89792 0.91505 1.03912 0.90899 0.89635 0.89856 0.81600 0.81919 0.91644 0.90454 0.90905 0.90410 0.91972 0.88008 0.93563 0.92391 0.92663 0.93320 0.89303 0.96596 0.93743 0.96233 0.92846 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 11.04 59.85 0.66 1.17 16 2 N -0.45 -5.40 3.09 -124.53 -0.38 -5.78 16 3 C -0.02 -0.28 11.34 -16.82 -0.19 -0.47 16 4 C -0.16 -2.64 9.35 -37.49 -0.35 -2.99 16 5 C -0.23 -3.81 6.21 -103.35 -0.64 -4.46 16 6 C 0.61 11.17 7.88 -12.59 -0.10 11.07 16 7 O -0.57 -11.61 17.14 5.26 0.09 -11.52 16 8 N -0.61 -10.34 3.30 -171.16 -0.56 -10.91 16 9 C 0.11 1.58 7.08 -2.05 -0.01 1.56 16 10 C -0.13 -1.77 6.15 -25.05 -0.15 -1.92 16 11 C -0.09 -1.41 0.62 -154.05 -0.09 -1.50 16 12 C 0.11 1.84 4.09 -3.14 -0.01 1.83 16 13 C -0.09 -1.49 4.40 -26.92 -0.12 -1.61 16 14 C -0.15 -2.62 5.87 -26.57 -0.16 -2.77 16 15 C 0.17 3.83 5.27 -3.56 -0.02 3.81 16 16 N -0.59 -13.80 2.77 -172.34 -0.48 -14.28 16 17 C -0.25 -6.37 9.60 -15.06 -0.14 -6.51 16 18 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 19 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 20 N -0.90 -25.35 11.00 55.49 0.61 -24.74 16 21 Si 0.90 20.96 29.57 -169.99 -5.03 15.93 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.16 3.22 4.81 -3.93 -0.02 3.20 16 26 C 0.07 0.93 11.13 -16.84 -0.19 0.74 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.16 2.75 5.16 -52.49 -0.27 2.47 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 34 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 35 H 0.08 0.95 7.83 -51.93 -0.41 0.54 16 36 H 0.06 1.04 6.53 -51.93 -0.34 0.70 16 37 H 0.10 1.91 4.57 -51.93 -0.24 1.67 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 1.00 6.65 -51.93 -0.35 0.65 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 47 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -31.59 364.07 -9.23 -40.82 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.34 Total: 3.79 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.63 Total: 1.20 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.82 Total: -55.71 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.59 -9.23 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040158225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.926 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds