Wall clock time and date at job start Tue Mar 31 2020 11:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36447 * 124.85554 * 2 1 4 4 C 1.34488 * 108.85969 * 179.73416 * 3 2 1 5 5 C 1.46694 * 106.32922 * 0.43214 * 4 3 2 6 6 C 1.47260 * 126.93924 * 179.82987 * 5 4 3 7 7 O 1.21623 * 119.99907 * 171.84110 * 6 5 4 8 8 N 1.34776 * 120.00224 * 351.84550 * 6 5 4 9 9 C 1.48156 * 127.02881 * 182.23619 * 8 6 5 10 10 C 1.55042 * 103.31685 * 140.99265 * 9 8 6 11 11 C 1.54151 * 102.73412 * 36.99232 * 10 9 8 12 12 C 1.47616 * 127.02630 * 2.25327 * 8 6 5 13 13 C 1.52502 * 110.05746 * 97.47148 * 11 10 9 14 14 C 1.53123 * 109.60440 * 181.74280 * 13 11 10 15 15 C 1.53195 * 109.28896 * 299.48365 * 14 13 11 16 16 N 1.47194 * 108.96415 * 55.08679 * 15 14 13 17 17 C 1.36936 * 120.85587 * 125.93377 * 16 15 14 18 18 H 1.08005 * 120.00439 * 211.16269 * 17 16 15 19 19 C 1.38818 * 120.00287 * 31.16443 * 17 16 15 20 20 N 1.31616 * 119.99611 * 10.09505 * 19 17 16 21 21 Si 1.86797 * 120.00158 * 190.09286 * 19 17 16 22 22 H 1.48493 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47239 * 120.00303 * 21 19 17 24 24 H 1.48506 * 109.47146 * 239.99941 * 21 19 17 25 25 C 1.47033 * 118.46723 * 306.06114 * 16 15 14 26 26 C 1.34668 * 124.84910 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46853 * 269.98051 * 1 2 3 28 28 H 1.09001 * 109.47031 * 29.97947 * 1 2 3 29 29 H 1.08994 * 109.47304 * 149.97981 * 1 2 3 30 30 H 1.07997 * 125.56543 * 0.02562 * 3 2 1 31 31 H 1.07996 * 126.83432 * 180.26454 * 4 3 2 32 32 H 1.09000 * 110.65008 * 259.45075 * 9 8 6 33 33 H 1.08999 * 110.65130 * 22.36894 * 9 8 6 34 34 H 1.08998 * 110.76187 * 278.67888 * 10 9 8 35 35 H 1.09006 * 110.75574 * 155.30239 * 10 9 8 36 36 H 1.09001 * 109.96986 * 85.98707 * 12 8 6 37 37 H 1.08999 * 109.97048 * 324.71657 * 12 8 6 38 38 H 1.09001 * 109.44343 * 301.78115 * 13 11 10 39 39 H 1.08998 * 109.44550 * 61.72815 * 13 11 10 40 40 H 1.09003 * 109.50332 * 59.43034 * 14 13 11 41 41 H 1.09000 * 109.50402 * 179.50362 * 14 13 11 42 42 H 1.08999 * 109.56709 * 174.88973 * 15 14 13 43 43 H 1.09001 * 109.56426 * 295.12471 * 15 14 13 44 44 H 0.96998 * 119.99911 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58398 * 292.86075 * 25 16 15 46 46 H 1.09004 * 109.58659 * 172.58262 * 25 16 15 47 47 H 1.07997 * 125.80180 * 359.95852 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 0.0059 5 6 3.5462 -0.7178 -0.0008 6 6 4.7283 -1.5959 -0.0014 7 8 4.5943 -2.7962 0.1422 8 7 5.9587 -1.0695 -0.1609 9 6 7.2421 -1.8064 -0.2320 10 6 8.0337 -1.0405 -1.3231 11 6 7.6308 0.4256 -1.0691 12 6 6.3032 0.3591 -0.3002 13 6 8.6958 1.1227 -0.2291 14 6 8.2648 2.5646 0.0534 15 6 8.1038 3.3138 -1.2731 16 7 7.1665 2.5711 -2.1313 17 6 6.0669 3.1863 -2.6674 18 1 5.1645 2.6203 -2.8455 19 6 6.1119 4.5376 -2.9821 20 7 7.2594 5.1817 -2.9546 21 14 4.5442 5.4416 -3.4447 22 1 3.3979 4.4986 -3.4016 23 1 4.3103 6.5501 -2.4847 24 1 4.6781 5.9948 -4.8164 25 6 7.4361 1.1505 -2.3983 26 6 2.2345 -1.1052 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.8829 2.1372 0.0004 31 1 4.3981 1.4016 0.0114 32 1 7.7641 -1.7624 0.7239 33 1 7.0750 -2.8415 -0.5300 34 1 7.7257 -1.3588 -2.3190 35 1 9.1069 -1.1752 -1.1879 36 1 6.4202 0.8116 0.6845 37 1 5.5233 0.8774 -0.8582 38 1 8.8206 0.5898 0.7136 39 1 9.6410 1.1265 -0.7719 40 1 7.3147 2.5624 0.5877 41 1 9.0229 3.0585 0.6612 42 1 7.7102 4.3123 -1.0830 43 1 9.0717 3.3911 -1.7684 44 1 7.2910 6.1258 -3.1748 45 1 8.3394 1.0571 -3.0012 46 1 6.5931 0.7129 -2.9331 47 1 1.8767 -2.1241 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040158225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:30 Heat of formation + Delta-G solvation = 32.647346 kcal Electronic energy + Delta-G solvation = -28126.516925 eV Core-core repulsion = 24503.305651 eV Total energy + Delta-G solvation = -3623.211274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.21322 -41.12748 -39.40570 -37.16654 -34.70927 -33.82165 -32.37258 -32.26805 -30.31804 -30.09142 -27.49787 -27.27878 -26.83318 -24.66613 -23.77856 -22.57297 -21.97318 -21.13003 -20.15939 -19.53282 -18.55539 -18.10631 -17.17348 -16.90964 -16.77125 -16.21387 -16.03542 -15.68392 -15.29314 -15.19111 -15.01343 -14.50520 -14.44593 -14.29943 -14.12606 -13.64065 -13.52191 -13.33998 -13.26271 -13.03787 -12.96740 -12.85086 -12.78569 -12.67641 -12.34508 -12.21877 -11.96058 -11.88271 -11.81227 -11.37264 -11.02057 -10.99039 -10.85189 -10.48033 -9.72571 -9.48539 -9.21950 -8.53315 -7.79161 -5.28994 0.78041 1.47301 1.49703 1.51589 1.59235 1.90844 2.26715 2.54337 2.56786 3.36466 3.54457 3.68026 3.85949 3.93775 4.00416 4.04405 4.07430 4.28074 4.32465 4.37819 4.44127 4.47514 4.54971 4.58934 4.69679 4.73400 4.77899 4.84627 4.89586 4.96447 5.02829 5.05945 5.10743 5.12694 5.14518 5.20526 5.32912 5.42440 5.45679 5.60535 5.65831 5.73616 5.77253 5.89337 6.09563 6.36610 6.48552 6.63962 7.23581 7.26834 7.92679 8.46631 9.26061 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.006104 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.340702 B = 4586.157295 C = 6902.959289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.441 5.441 3 C -0.016 4.016 4 C -0.191 4.191 5 C -0.267 4.267 6 C 0.602 3.398 7 O -0.600 6.600 8 N -0.617 5.617 9 C 0.106 3.894 10 C -0.115 4.115 11 C -0.079 4.079 12 C 0.121 3.879 13 C -0.087 4.087 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.246 4.246 18 H 0.061 0.939 19 C -0.047 4.047 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.298 1.298 25 C 0.163 3.837 26 C 0.075 3.925 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.189 0.811 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.054 0.946 43 H -0.006 1.006 44 H 0.247 0.753 45 H 0.015 0.985 46 H 0.039 0.961 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -10.124 8.249 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.115 5.115 3 C -0.143 4.143 4 C -0.215 4.215 5 C -0.277 4.277 6 C 0.396 3.604 7 O -0.484 6.484 8 N -0.348 5.348 9 C -0.016 4.016 10 C -0.153 4.153 11 C -0.081 4.081 12 C -0.001 4.001 13 C -0.125 4.125 14 C -0.174 4.174 15 C 0.052 3.948 16 N -0.326 5.326 17 C -0.376 4.376 18 H 0.078 0.922 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.788 3.212 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.225 1.225 25 C 0.037 3.963 26 C -0.062 4.062 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.206 0.794 31 H 0.164 0.836 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.012 0.988 44 H 0.057 0.943 45 H 0.033 0.967 46 H 0.058 0.942 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.320 -10.562 8.288 15.794 hybrid contribution -0.422 1.058 -0.648 1.311 sum -8.742 -9.504 7.640 15.003 Atomic orbital electron populations 1.22460 0.74039 1.06268 1.05043 1.43913 1.08404 1.04860 1.54331 1.22154 0.90237 0.92484 1.09424 1.22688 0.97575 0.93171 1.08040 1.20363 0.92841 0.93754 1.20737 1.17314 0.81941 0.86227 0.74944 1.90675 1.86544 1.16463 1.54711 1.48733 1.05774 1.09276 1.71037 1.22563 0.82808 0.96481 0.99702 1.22717 1.01406 0.92699 0.98497 1.21485 0.94633 0.95420 0.96583 1.22426 0.97380 0.80563 0.99754 1.21363 0.96974 0.94892 0.99261 1.22090 1.00591 0.96586 0.98122 1.20643 0.90687 0.95213 0.88300 1.44273 1.26994 1.06167 1.55176 1.19394 0.90863 0.92891 1.34456 0.92167 1.25788 0.98862 0.99228 1.00342 1.70135 1.24867 1.09095 1.54139 0.85317 0.80487 0.78588 0.76808 1.18921 1.21647 1.22541 1.20919 0.97276 0.84693 0.93407 1.21929 0.89255 0.92753 1.02301 0.89015 0.88123 0.88004 0.79435 0.83643 0.89677 0.90536 0.91433 0.87510 0.91721 0.90206 0.90532 0.91718 0.92904 0.91337 0.92758 0.98839 0.94335 0.96671 0.94243 0.79415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 11.04 127.77 1.41 2.08 16 2 N -0.44 -9.63 3.09 -547.91 -1.69 -11.32 16 3 C -0.02 -0.42 11.34 83.12 0.94 0.53 16 4 C -0.19 -6.16 9.35 23.62 0.22 -5.94 16 5 C -0.27 -8.87 6.21 -19.04 -0.12 -8.99 16 6 C 0.60 22.09 7.88 86.62 0.68 22.78 16 7 O -0.60 -24.43 17.14 -4.10 -0.07 -24.50 16 8 N -0.62 -20.44 3.30 -813.67 -2.68 -23.13 16 9 C 0.11 2.89 7.08 86.76 0.61 3.50 16 10 C -0.11 -2.97 6.15 31.68 0.19 -2.78 16 11 C -0.08 -2.50 0.62 -51.88 -0.03 -2.53 16 12 C 0.12 4.03 4.09 86.35 0.35 4.38 16 13 C -0.09 -2.55 4.40 30.47 0.13 -2.42 16 14 C -0.13 -4.70 5.87 30.70 0.18 -4.52 16 15 C 0.18 8.16 5.27 86.31 0.46 8.62 16 16 N -0.60 -28.86 2.77 -699.16 -1.94 -30.79 16 17 C -0.25 -13.00 9.60 84.04 0.81 -12.19 16 18 H 0.06 3.19 7.85 -2.91 -0.02 3.16 16 19 C -0.05 -2.56 5.07 84.86 0.43 -2.13 16 20 N -0.94 -54.12 11.00 21.65 0.24 -53.88 16 21 Si 0.96 43.79 29.57 68.60 2.03 45.82 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 25 C 0.16 6.59 4.81 86.16 0.41 7.00 16 26 C 0.08 2.00 11.13 83.91 0.93 2.93 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.10 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.15 5.10 5.16 -2.91 -0.02 5.09 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.12 7.87 -2.39 -0.02 2.10 16 34 H 0.07 1.84 7.84 -2.39 -0.02 1.82 16 35 H 0.11 2.20 7.83 -2.38 -0.02 2.18 16 36 H 0.06 2.12 6.53 -2.39 -0.02 2.10 16 37 H 0.08 3.08 4.57 -2.39 -0.01 3.06 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.87 6.65 -2.39 -0.02 1.85 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 2.88 6.06 -2.39 -0.01 2.86 16 43 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 47 H 0.19 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -70.79 364.07 4.47 -66.32 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.96 Total: 21.16 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.62 Total: 10.32 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.07 Total: -119.12 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.07 Total: -24.50 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.79 4.47 -66.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040158225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.972 kcal (2) G-P(sol) polarization free energy of solvation -70.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds