Wall clock time and date at job start Tue Mar 31 2020 11:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36445 * 124.84896 * 2 1 4 4 C 1.34486 * 108.85428 * 180.02562 * 3 2 1 5 5 C 1.46694 * 106.33246 * 0.02562 * 4 3 2 6 6 C 1.47262 * 126.94069 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99999 * 172.27373 * 6 5 4 8 8 N 1.34777 * 120.00037 * 352.28393 * 6 5 4 9 9 C 1.48155 * 127.02200 * 179.77542 * 8 6 5 10 10 C 1.55035 * 103.31349 * 140.97997 * 9 8 6 11 11 C 1.54179 * 102.72742 * 37.01007 * 10 9 8 12 12 C 1.47618 * 127.02346 * 359.76378 * 8 6 5 13 13 C 1.52490 * 110.02268 * 219.30529 * 11 10 9 14 14 C 1.53130 * 109.58881 * 298.37089 * 13 11 10 15 15 C 1.53182 * 109.29469 * 299.50854 * 14 13 11 16 16 N 1.46936 * 108.88476 * 55.07817 * 15 14 13 17 17 C 1.36936 * 120.68162 * 125.94982 * 16 15 14 18 18 H 1.08000 * 119.99676 * 331.89700 * 17 16 15 19 19 C 1.38814 * 120.00054 * 151.90165 * 17 16 15 20 20 N 1.31622 * 119.99733 * 340.53018 * 19 17 16 21 21 Si 1.86795 * 119.99766 * 160.53096 * 19 17 16 22 22 H 1.48502 * 109.47134 * 60.00061 * 21 19 17 23 23 H 1.48504 * 109.47090 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47531 * 299.99653 * 21 19 17 25 25 C 1.47028 * 118.63724 * 305.96749 * 16 15 14 26 26 C 1.34656 * 124.84674 * 180.34177 * 2 1 3 27 27 H 1.08994 * 109.47379 * 89.97467 * 1 2 3 28 28 H 1.09007 * 109.47229 * 209.97369 * 1 2 3 29 29 H 1.09004 * 109.47058 * 329.96709 * 1 2 3 30 30 H 1.08001 * 125.57536 * 0.04967 * 3 2 1 31 31 H 1.07993 * 126.83549 * 180.02562 * 4 3 2 32 32 H 1.09004 * 110.64889 * 259.43353 * 9 8 6 33 33 H 1.08999 * 110.65146 * 22.35468 * 9 8 6 34 34 H 1.09002 * 110.76111 * 278.69721 * 10 9 8 35 35 H 1.09006 * 110.76151 * 155.31930 * 10 9 8 36 36 H 1.08996 * 109.96900 * 85.97205 * 12 8 6 37 37 H 1.09001 * 110.00378 * 324.71844 * 12 8 6 38 38 H 1.09003 * 109.44388 * 178.33790 * 13 11 10 39 39 H 1.09006 * 109.44568 * 58.39904 * 13 11 10 40 40 H 1.08995 * 109.49934 * 59.45571 * 14 13 11 41 41 H 1.09003 * 109.49389 * 179.56624 * 14 13 11 42 42 H 1.08993 * 109.57273 * 174.89545 * 15 14 13 43 43 H 1.09002 * 109.57268 * 295.25759 * 15 14 13 44 44 H 0.96993 * 119.99184 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.58453 * 172.58555 * 25 16 15 46 46 H 1.09002 * 109.58581 * 292.99822 * 25 16 15 47 47 H 1.07998 * 125.80713 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5958 -0.0030 7 8 4.5943 -2.7964 0.1379 8 7 5.9589 -1.0690 -0.1602 9 6 7.2467 -1.8012 -0.1813 10 6 8.0539 -1.0720 -1.2861 11 6 7.6398 0.4006 -1.0934 12 6 6.2988 0.3553 -0.3467 13 6 7.4706 1.0771 -2.4495 14 6 8.8043 1.0602 -3.2016 15 6 9.8539 1.8238 -2.3880 16 7 9.9248 1.2439 -1.0398 17 6 11.1199 0.8180 -0.5243 18 1 11.9019 0.4756 -1.1858 19 6 11.3260 0.8264 0.8484 20 7 10.5688 1.5741 1.6230 21 14 12.6781 -0.2234 1.5961 22 1 13.9903 0.1852 1.0337 23 1 12.6919 -0.0371 3.0694 24 1 12.4274 -1.6525 1.2798 25 6 8.6863 1.1298 -0.2557 26 6 2.2345 -1.1051 -0.0066 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8903 0.5135 29 1 -0.3633 0.8897 0.5144 30 1 1.8829 2.1373 0.0008 31 1 4.3980 1.4016 -0.0003 32 1 7.7515 -1.7189 0.7813 33 1 7.0898 -2.8475 -0.4434 34 1 7.7648 -1.4285 -2.2748 35 1 9.1252 -1.1961 -1.1275 36 1 6.3956 0.8449 0.6222 37 1 5.5269 0.8486 -0.9375 38 1 7.1495 2.1084 -2.3029 39 1 6.7194 0.5422 -3.0307 40 1 9.1307 0.0296 -3.3405 41 1 8.6798 1.5373 -4.1737 42 1 10.8258 1.7380 -2.8738 43 1 9.5696 2.8738 -2.3192 44 1 10.7132 1.5802 2.5821 45 1 8.8819 0.5661 0.6564 46 1 8.3219 2.1251 -0.0014 47 1 1.8767 -2.1241 -0.0131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040158227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:36 Heat of formation + Delta-G solvation = 49.595422 kcal Electronic energy + Delta-G solvation = -27684.460430 eV Core-core repulsion = 24061.984080 eV Total energy + Delta-G solvation = -3622.476350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28526 -39.72932 -37.98052 -35.56990 -33.10865 -32.91460 -31.03664 -29.98468 -29.35144 -29.15957 -26.65472 -25.49806 -25.29161 -23.25322 -22.17839 -21.23992 -20.65183 -20.29719 -18.99001 -17.89544 -17.23009 -16.50329 -15.90979 -15.70853 -15.41586 -14.89984 -14.65357 -14.12346 -13.98057 -13.89225 -13.48372 -13.35141 -13.12057 -12.96095 -12.84994 -12.61935 -12.42162 -12.22825 -12.15593 -11.96191 -11.63091 -11.37171 -11.05882 -10.87210 -10.81509 -10.57200 -10.35969 -10.11895 -9.95496 -9.76985 -9.72387 -9.37638 -9.32775 -8.65756 -8.46933 -8.44214 -8.11904 -6.65109 -5.78813 -3.18960 1.84647 2.41701 2.69000 3.40063 3.46907 3.48112 3.49220 3.79628 4.45696 4.51361 4.79733 4.80073 4.90732 5.00745 5.04590 5.09254 5.30219 5.40960 5.48233 5.51188 5.58618 5.72434 5.78304 5.82437 5.88646 5.94814 6.00377 6.08734 6.20418 6.27866 6.32313 6.40375 6.49648 6.56019 6.60400 6.70764 6.72069 6.82903 6.92676 6.97458 7.03819 7.05306 7.13052 7.33850 7.60309 7.82050 8.02352 8.45501 8.61476 9.21991 9.86097 10.43934 11.29851 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.003633 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.667620 B = 7705.389484 C = 8162.148445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.023 4.023 4 C -0.173 4.173 5 C -0.223 4.223 6 C 0.605 3.395 7 O -0.567 6.567 8 N -0.609 5.609 9 C 0.105 3.895 10 C -0.112 4.112 11 C -0.095 4.095 12 C 0.105 3.895 13 C -0.093 4.093 14 C -0.134 4.134 15 C 0.145 3.855 16 N -0.588 5.588 17 C -0.254 4.254 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.190 3.810 26 C 0.067 3.933 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.016 0.984 44 H 0.254 0.746 45 H 0.085 0.915 46 H 0.019 0.981 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.561 -0.125 -5.267 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.126 5.126 3 C -0.149 4.149 4 C -0.196 4.196 5 C -0.233 4.233 6 C 0.397 3.603 7 O -0.448 6.448 8 N -0.341 5.341 9 C -0.017 4.017 10 C -0.150 4.150 11 C -0.098 4.098 12 C -0.018 4.018 13 C -0.131 4.131 14 C -0.173 4.173 15 C 0.018 3.982 16 N -0.310 5.310 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.726 3.274 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.064 3.936 26 C -0.068 4.068 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.183 0.817 31 H 0.175 0.825 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.037 0.963 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.041 -0.715 -4.980 19.694 hybrid contribution 0.617 -0.327 0.506 0.862 sum -18.424 -1.041 -4.475 18.988 Atomic orbital electron populations 1.22085 0.77163 1.04523 1.03365 1.43603 1.06596 1.05984 1.56438 1.21796 0.90637 0.91165 1.11323 1.22648 0.96454 0.93629 1.06896 1.20336 0.92335 0.93472 1.17137 1.16964 0.81134 0.86407 0.75824 1.90730 1.85970 1.15292 1.52855 1.48612 1.05363 1.09267 1.70824 1.22541 0.82628 0.96595 0.99890 1.22667 1.01506 0.93964 0.96903 1.21850 0.94879 0.96559 0.96468 1.22544 0.97053 0.81814 1.00416 1.21368 0.97020 0.99563 0.95107 1.22032 0.96441 1.01292 0.97575 1.20905 0.96189 0.94054 0.87019 1.44003 1.03821 1.70506 1.12681 1.19087 0.92840 1.36147 0.90274 0.91802 1.24990 0.98259 0.98698 0.97333 1.70041 1.41742 1.38285 1.04182 0.86464 0.81918 0.80909 0.78078 1.20969 1.21703 1.20934 1.20684 0.83237 0.96388 0.93335 1.21706 0.89791 0.91598 1.03695 0.90815 0.89745 0.89676 0.81685 0.82475 0.90964 0.90675 0.92337 0.88408 0.91269 0.90231 0.92668 0.93539 0.92199 0.93331 0.93006 0.96611 0.93609 0.89670 0.96275 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.03 59.85 0.66 1.01 16 2 N -0.45 -4.36 3.09 -124.52 -0.38 -4.74 16 3 C -0.02 -0.24 11.34 -16.83 -0.19 -0.43 16 4 C -0.17 -2.22 9.33 -37.49 -0.35 -2.57 16 5 C -0.22 -3.36 6.21 -103.35 -0.64 -4.00 16 6 C 0.61 11.00 7.88 -12.59 -0.10 10.90 16 7 O -0.57 -11.82 17.13 5.26 0.09 -11.73 16 8 N -0.61 -10.69 3.30 -171.17 -0.56 -11.25 16 9 C 0.11 1.89 7.09 -2.06 -0.01 1.88 16 10 C -0.11 -2.01 5.00 -25.04 -0.13 -2.13 16 11 C -0.10 -1.69 0.63 -154.08 -0.10 -1.79 16 12 C 0.10 1.71 4.70 -3.15 -0.01 1.69 16 13 C -0.09 -1.50 4.34 -26.93 -0.12 -1.62 16 14 C -0.13 -2.25 5.89 -26.57 -0.16 -2.40 16 15 C 0.14 2.92 6.50 -3.71 -0.02 2.89 16 16 N -0.59 -13.90 2.50 -172.60 -0.43 -14.34 16 17 C -0.25 -6.68 9.56 -15.06 -0.14 -6.83 16 18 H 0.06 1.67 7.90 -52.49 -0.41 1.25 16 19 C 0.01 0.17 4.85 -17.43 -0.08 0.09 16 20 N -0.90 -25.30 11.38 55.49 0.63 -24.67 16 21 Si 0.90 21.34 29.60 -169.99 -5.03 16.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.19 4.21 3.65 -3.96 -0.01 4.19 16 26 C 0.07 0.83 11.13 -16.84 -0.19 0.64 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 29 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 30 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.16 1.95 5.20 -52.49 -0.27 1.68 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.33 7.85 -51.93 -0.41 0.92 16 34 H 0.06 0.99 7.63 -51.93 -0.40 0.59 16 35 H 0.10 1.98 7.48 -51.93 -0.39 1.59 16 36 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 37 H 0.08 1.16 4.88 -51.93 -0.25 0.91 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.04 7.13 -51.93 -0.37 0.67 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 2.15 6.19 -51.93 -0.32 1.83 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.22 364.89 -9.21 -41.43 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.42 Total: 1.97 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.60 Total: 1.52 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.75 Total: -55.00 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.22 -9.21 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040158227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.024 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds