Wall clock time and date at job start Tue Mar 31 2020 11:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35534 * 125.67922 * 2 1 4 4 C 1.35450 * 108.87240 * 179.74834 * 3 2 1 5 5 C 1.39837 * 107.86463 * 0.39758 * 4 3 2 6 6 C 1.37651 * 125.68047 * 179.97438 * 2 1 3 7 7 C 1.46682 * 126.23159 * 0.02562 * 6 2 1 8 8 O 1.21692 * 119.99828 * 7.09402 * 7 6 2 9 9 N 1.34775 * 119.99937 * 187.08862 * 7 6 2 10 10 C 1.47483 * 125.66126 * 4.97814 * 9 7 6 11 11 C 1.55241 * 104.79198 * 155.92684 * 10 9 7 12 12 C 1.54506 * 101.44182 * 36.66062 * 11 10 9 13 13 C 1.47177 * 125.66362 * 185.27543 * 9 7 6 14 14 C 1.52271 * 110.20800 * 83.42604 * 12 11 10 15 15 C 1.53315 * 109.42366 * 182.20013 * 14 12 11 16 16 N 1.46921 * 108.70858 * 306.49365 * 15 14 12 17 17 C 1.36944 * 120.56235 * 234.21501 * 16 15 14 18 18 H 1.07993 * 119.99824 * 151.72366 * 17 16 15 19 19 C 1.38812 * 119.99643 * 331.71971 * 17 16 15 20 20 N 1.31618 * 120.00282 * 334.79202 * 19 17 16 21 21 Si 1.86802 * 119.99809 * 154.79300 * 19 17 16 22 22 H 1.48490 * 109.47297 * 94.98002 * 21 19 17 23 23 H 1.48505 * 109.47012 * 214.98290 * 21 19 17 24 24 H 1.48511 * 109.46849 * 334.97804 * 21 19 17 25 25 C 1.46936 * 118.87570 * 54.22687 * 16 15 14 26 26 C 1.52276 * 110.20989 * 206.61519 * 12 11 10 27 27 H 1.09001 * 109.47078 * 264.34229 * 1 2 3 28 28 H 1.09000 * 109.47172 * 24.34802 * 1 2 3 29 29 H 1.09005 * 109.46775 * 144.35032 * 1 2 3 30 30 H 1.08005 * 125.56200 * 359.97438 * 3 2 1 31 31 H 1.08007 * 126.06521 * 180.28163 * 4 3 2 32 32 H 1.08001 * 126.45088 * 179.86688 * 5 4 3 33 33 H 1.09003 * 110.34876 * 274.86887 * 10 9 7 34 34 H 1.08998 * 110.35587 * 37.15462 * 10 9 7 35 35 H 1.09008 * 111.19954 * 278.56672 * 11 10 9 36 36 H 1.09001 * 110.94856 * 154.64832 * 11 10 9 37 37 H 1.09002 * 109.90578 * 300.84420 * 13 9 7 38 38 H 1.09001 * 109.90494 * 61.91204 * 13 9 7 39 39 H 1.09004 * 109.47910 * 302.18551 * 14 12 11 40 40 H 1.08999 * 109.48458 * 62.20926 * 14 12 11 41 41 H 1.09001 * 109.59813 * 186.72234 * 15 14 12 42 42 H 1.09004 * 109.59541 * 66.25569 * 15 14 12 43 43 H 0.96998 * 120.00475 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.59941 * 185.99151 * 25 16 15 45 45 H 1.09001 * 109.72307 * 65.60139 * 25 16 15 46 46 H 1.09002 * 109.47793 * 297.77356 * 26 12 11 47 47 H 1.08995 * 109.48040 * 57.79695 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 0.0056 5 6 3.5780 -0.6888 0.0001 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6294 -2.7661 -0.1299 9 7 2.7042 -3.5126 0.1451 10 6 4.1449 -3.3478 0.4144 11 6 4.5764 -4.6771 1.0901 12 6 3.7151 -5.7048 0.3225 13 6 2.4032 -4.9504 0.0544 14 6 4.3926 -6.0852 -0.9871 15 6 3.4981 -7.0623 -1.7589 16 7 3.1635 -8.1904 -0.8790 17 6 3.4092 -9.4784 -1.2741 18 1 3.6047 -10.2417 -0.5357 19 6 3.4067 -9.8027 -2.6239 20 7 2.7160 -9.0736 -3.4746 21 14 4.3836 -11.2738 -3.2327 22 1 3.4950 -12.4611 -3.3086 23 1 4.9330 -10.9797 -4.5807 24 1 5.4998 -11.5501 -2.2928 25 6 2.5606 -7.9132 0.4320 26 6 3.4614 -6.9307 1.1895 27 1 -0.3633 -0.1013 1.0227 28 1 -0.3633 0.9363 -0.4237 29 1 -0.3633 -0.8351 -0.5990 30 1 1.9082 2.1236 -0.0004 31 1 4.4132 1.3612 0.0113 32 1 4.4584 -1.3143 0.0004 33 1 4.6901 -3.1992 -0.5177 34 1 4.3108 -2.5084 1.0896 35 1 4.3311 -4.6772 2.1522 36 1 5.6390 -4.8653 0.9366 37 1 1.6592 -5.2218 0.8034 38 1 2.0310 -5.1895 -0.9418 39 1 4.5539 -5.1892 -1.5865 40 1 5.3513 -6.5590 -0.7763 41 1 4.0295 -7.4288 -2.6372 42 1 2.5836 -6.5554 -2.0671 43 1 2.7140 -9.3004 -4.4177 44 1 2.4738 -8.8407 0.9979 45 1 1.5724 -7.4735 0.2968 46 1 4.4103 -7.4135 1.4229 47 1 2.9711 -6.6266 2.1142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040611741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:38 Heat of formation + Delta-G solvation = 30.470025 kcal Electronic energy + Delta-G solvation = -27555.406751 eV Core-core repulsion = 23932.101062 eV Total energy + Delta-G solvation = -3623.305690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43247 -41.25798 -39.42361 -37.45509 -34.96538 -33.74060 -32.80137 -31.69528 -30.77838 -30.44047 -27.92068 -27.38052 -26.38638 -24.65246 -23.92062 -22.65793 -22.20121 -21.51992 -20.17018 -19.73364 -18.50894 -17.96494 -17.42027 -17.16911 -16.80905 -16.28783 -16.00785 -15.75798 -15.42199 -15.09605 -14.85440 -14.85301 -14.63807 -14.20710 -14.16459 -13.84040 -13.78434 -13.50757 -13.25374 -13.07907 -13.06681 -13.00845 -12.94913 -12.58934 -12.53247 -12.26422 -12.10075 -11.92945 -11.81962 -11.48037 -11.09633 -11.07656 -10.93174 -10.50068 -9.81701 -9.65292 -9.15115 -8.69159 -7.89752 -5.30359 0.46696 1.45360 1.47890 1.57718 1.58713 1.84635 2.28686 2.32670 2.52032 3.21902 3.39368 3.60591 3.70230 3.79114 3.82310 3.97096 4.19688 4.23628 4.24953 4.33603 4.40803 4.48932 4.52993 4.54481 4.63082 4.66291 4.69483 4.71144 4.74320 4.87250 4.94925 5.03365 5.10278 5.13833 5.18677 5.26691 5.27748 5.35004 5.37210 5.42100 5.45978 5.66975 5.73091 5.86702 6.00485 6.33755 6.37201 6.46973 7.04204 7.13384 7.86264 8.39714 9.16392 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.003095 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.476102 B = 9045.776293 C = 9240.818071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.424 5.424 3 C 0.024 3.976 4 C -0.219 4.219 5 C -0.144 4.144 6 C -0.088 4.088 7 C 0.587 3.413 8 O -0.600 6.600 9 N -0.603 5.603 10 C 0.089 3.911 11 C -0.113 4.113 12 C -0.052 4.052 13 C 0.128 3.872 14 C -0.110 4.110 15 C 0.179 3.821 16 N -0.606 5.606 17 C -0.266 4.266 18 H 0.067 0.933 19 C -0.048 4.048 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.266 1.266 25 C 0.137 3.863 26 C -0.104 4.104 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.206 0.794 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.042 0.958 42 H -0.013 1.013 43 H 0.249 0.751 44 H 0.054 0.946 45 H 0.001 0.999 46 H 0.075 0.925 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 22.219 11.221 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.097 5.097 3 C -0.111 4.111 4 C -0.243 4.243 5 C -0.170 4.170 6 C -0.201 4.201 7 C 0.380 3.620 8 O -0.484 6.484 9 N -0.335 5.335 10 C -0.032 4.032 11 C -0.151 4.151 12 C -0.053 4.053 13 C 0.006 3.994 14 C -0.149 4.149 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.396 4.396 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.190 1.190 25 C 0.011 3.989 26 C -0.143 4.143 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.222 0.778 31 H 0.187 0.813 32 H 0.188 0.812 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.005 0.995 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.019 0.981 46 H 0.094 0.906 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.275 22.070 10.997 25.026 hybrid contribution -0.509 -1.263 -1.101 1.751 sum 3.765 20.806 9.896 23.346 Atomic orbital electron populations 1.22289 0.75677 1.05410 1.04047 1.44116 1.07452 1.05157 1.52988 1.22769 0.90646 0.92301 1.05393 1.21262 0.97113 0.94621 1.11259 1.22232 0.94516 0.96772 1.03500 1.19877 0.91916 0.86597 1.21682 1.17149 0.84300 0.84316 0.76279 1.90744 1.18030 1.85423 1.54186 1.48242 1.10359 1.05364 1.69499 1.23109 0.78718 1.00046 1.01338 1.22950 1.01054 0.91395 0.99702 1.20883 0.93233 0.94999 0.96162 1.21893 0.98313 0.79168 1.00061 1.21855 0.99013 0.98430 0.95586 1.20539 0.94302 0.87152 0.92669 1.44326 1.70762 1.02120 1.15720 1.19466 1.41374 0.87521 0.91288 0.91535 1.25763 1.00098 1.00894 0.97640 1.70299 1.40856 1.43822 1.02705 0.85376 0.79229 0.79200 0.77331 1.21505 1.21926 1.19011 1.21109 0.93559 0.97360 0.86833 1.21775 1.00825 0.94586 0.97127 0.90456 0.86285 0.91141 0.77757 0.81274 0.81200 0.89793 0.87248 0.89106 0.87191 0.92763 0.94464 0.91719 0.91079 0.93959 0.99540 0.94223 0.92790 0.98147 0.90631 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.51 127.77 1.34 2.61 16 2 N -0.42 -9.43 3.16 -534.30 -1.69 -11.12 16 3 C 0.02 0.38 11.37 83.48 0.95 1.33 16 4 C -0.22 -3.50 10.81 22.01 0.24 -3.26 16 5 C -0.14 -2.93 9.15 22.57 0.21 -2.73 16 6 C -0.09 -2.38 6.82 40.35 0.28 -2.10 16 7 C 0.59 19.86 7.80 86.45 0.67 20.53 16 8 O -0.60 -24.75 15.11 -4.32 -0.07 -24.81 16 9 N -0.60 -18.28 3.33 -816.51 -2.72 -21.00 16 10 C 0.09 1.82 4.78 86.96 0.42 2.24 16 11 C -0.11 -2.26 6.00 31.88 0.19 -2.07 16 12 C -0.05 -1.55 0.53 -51.92 -0.03 -1.58 16 13 C 0.13 4.50 5.06 86.48 0.44 4.93 16 14 C -0.11 -3.87 4.78 30.46 0.15 -3.72 16 15 C 0.18 8.72 5.10 86.40 0.44 9.16 16 16 N -0.61 -30.76 2.97 -698.59 -2.08 -32.84 16 17 C -0.27 -14.85 9.51 84.03 0.80 -14.05 16 18 H 0.07 3.61 7.95 -2.91 -0.02 3.58 16 19 C -0.05 -2.73 4.67 84.86 0.40 -2.33 16 20 N -0.93 -57.01 11.76 21.65 0.25 -56.76 16 21 Si 0.96 45.27 29.62 68.60 2.03 47.30 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 C 0.14 5.76 6.24 86.40 0.54 6.30 16 26 C -0.10 -3.25 4.70 30.46 0.14 -3.11 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.12 1.29 8.12 -2.39 -0.02 1.27 16 29 H 0.07 1.82 6.51 -2.38 -0.02 1.81 16 30 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.17 2.73 4.77 -2.91 -0.01 2.72 16 33 H 0.08 1.58 7.34 -2.39 -0.02 1.56 16 34 H 0.11 1.74 5.88 -2.39 -0.01 1.73 16 35 H 0.09 1.59 8.01 -2.38 -0.02 1.57 16 36 H 0.11 1.74 8.01 -2.39 -0.02 1.72 16 37 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 38 H 0.04 1.61 6.08 -2.39 -0.01 1.60 16 39 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.04 2.32 6.31 -2.39 -0.02 2.31 16 42 H -0.01 -0.73 6.53 -2.39 -0.02 -0.74 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 45 H 0.00 0.03 7.47 -2.39 -0.02 0.01 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -77.48 358.06 3.87 -73.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.97 Total: 13.47 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 7.17 Total: 12.15 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.23 Total: -121.72 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.48 3.87 -73.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040611741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.079 kcal (2) G-P(sol) polarization free energy of solvation -77.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds