Wall clock time and date at job start Tue Mar 31 2020 11:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00102 * 2 1 4 4 C 1.46897 * 110.99843 * 123.95651 * 2 1 3 5 5 C 1.50700 * 109.47175 * 169.99801 * 4 2 1 6 6 C 1.38362 * 119.85390 * 89.99860 * 5 4 2 7 7 C 1.37960 * 120.14772 * 180.02562 * 6 5 4 8 8 C 1.39573 * 119.84736 * 0.02562 * 7 6 5 9 9 C 1.47855 * 120.14077 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00296 * 221.41433 * 9 8 7 11 11 N 1.34777 * 119.99542 * 41.41662 * 9 8 7 12 12 C 1.46501 * 120.00401 * 355.48792 * 11 9 8 13 13 C 1.46496 * 119.99781 * 175.48167 * 11 9 8 14 14 C 1.53505 * 114.20606 * 120.00212 * 13 11 9 15 15 N 1.47065 * 87.98397 * 87.52168 * 14 13 11 16 16 C 1.36934 * 136.05476 * 207.09097 * 15 14 13 17 17 H 1.08004 * 120.00043 * 6.53374 * 16 15 14 18 18 C 1.38817 * 120.00123 * 186.53689 * 16 15 14 19 19 N 1.31616 * 119.99472 * 6.23207 * 18 16 15 20 20 Si 1.86797 * 119.99986 * 186.22881 * 18 16 15 21 21 H 1.48500 * 109.47089 * 265.00939 * 20 18 16 22 22 H 1.48495 * 109.47352 * 25.01403 * 20 18 16 23 23 H 1.48504 * 109.46857 * 145.01571 * 20 18 16 24 24 C 1.47067 * 87.88600 * 27.34195 * 15 14 13 25 25 C 1.39578 * 119.71827 * 0.26229 * 8 7 6 26 26 C 1.37959 * 119.84712 * 359.46267 * 25 8 7 27 27 H 1.09000 * 109.47116 * 296.04736 * 1 2 3 28 28 H 1.09004 * 109.46958 * 56.04441 * 1 2 3 29 29 H 1.09003 * 109.47402 * 176.04485 * 1 2 3 30 30 H 1.08999 * 109.46959 * 183.95349 * 3 2 1 31 31 H 1.08999 * 109.47075 * 303.95219 * 3 2 1 32 32 H 1.08997 * 109.47325 * 63.95350 * 3 2 1 33 33 H 1.09001 * 109.47403 * 49.99911 * 4 2 1 34 34 H 1.09001 * 109.47173 * 290.00045 * 4 2 1 35 35 H 1.08003 * 119.92642 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.07578 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46978 * 275.09481 * 12 11 9 38 38 H 1.09003 * 109.47229 * 35.08818 * 12 11 9 39 39 H 1.08996 * 109.47530 * 155.09288 * 12 11 9 40 40 H 1.08999 * 113.28571 * 346.93608 * 13 11 9 41 41 H 1.08999 * 113.46356 * 332.73828 * 14 13 11 42 42 H 1.08997 * 113.52116 * 202.31067 * 14 13 11 43 43 H 0.97002 * 119.99863 * 179.97438 * 19 18 16 44 44 H 1.08998 * 113.46263 * 87.43839 * 24 15 14 45 45 H 1.09002 * 113.46883 * 217.87570 * 24 15 14 46 46 H 1.07995 * 120.07400 * 179.72428 * 25 8 7 47 47 H 1.07999 * 119.92814 * 180.27949 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4817 -0.9526 0.9728 6 6 4.3555 -0.0159 1.4957 7 6 5.7173 -0.1804 1.3479 8 6 6.2128 -1.2946 0.6688 9 6 7.6710 -1.4770 0.5062 10 8 8.1201 -1.8692 -0.5530 11 7 8.5022 -1.2085 1.5326 12 6 7.9724 -0.6426 2.7756 13 6 9.9356 -1.4828 1.4052 14 6 10.8299 -0.2457 1.5667 15 7 10.8293 -0.4985 3.0155 16 6 10.9705 0.2576 4.1483 17 1 11.0208 1.3341 4.0763 18 6 11.0490 -0.3594 5.3894 19 7 11.1113 -1.6717 5.4690 20 14 11.0661 0.6728 6.9462 21 1 12.4701 0.9076 7.3690 22 1 10.4037 1.9756 6.6837 23 1 10.3381 -0.0445 8.0236 24 6 10.6168 -1.9218 2.7119 25 6 5.3257 -2.2327 0.1385 26 6 3.9664 -2.0591 0.2982 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0827 1.3431 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1756 34 1 1.7974 -0.2248 2.0628 35 1 3.9708 0.8460 2.0206 36 1 6.3984 0.5512 1.7568 37 1 7.9048 0.4413 2.6816 38 1 6.9810 -1.0529 2.9681 39 1 8.6368 -0.8949 3.6020 40 1 10.1809 -2.1019 0.5423 41 1 10.3368 0.6857 1.2884 42 1 11.8121 -0.3560 1.1072 43 1 11.1665 -2.1029 6.3361 44 1 11.5427 -2.4748 2.5541 45 1 9.9422 -2.4184 3.4093 46 1 5.7026 -3.0946 -0.3919 47 1 3.2789 -2.7865 -0.1076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044053482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:30 Heat of formation + Delta-G solvation = 77.499638 kcal Electronic energy + Delta-G solvation = -26682.698100 eV Core-core repulsion = 23061.431768 eV Total energy + Delta-G solvation = -3621.266332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36560 -39.15523 -37.79781 -36.88364 -34.18965 -32.32074 -31.64867 -31.00302 -28.10993 -27.85214 -27.23436 -26.22674 -24.62443 -23.88659 -22.81272 -22.53346 -21.32637 -20.23884 -18.44991 -17.23529 -16.62954 -16.30576 -15.91897 -15.78066 -15.69775 -15.05741 -14.89505 -14.60109 -14.30306 -14.15176 -13.76085 -13.50979 -13.42204 -12.78500 -12.72224 -12.64286 -12.53328 -12.42873 -12.28366 -12.01078 -11.88472 -11.60940 -11.37927 -11.35888 -11.15883 -10.91699 -10.77166 -10.66761 -10.14803 -9.91576 -9.57541 -9.46351 -8.97454 -8.87782 -8.81587 -8.58849 -7.99180 -6.95695 -5.86392 -3.17798 0.95440 1.37787 2.96016 3.32808 3.38137 3.39145 3.40849 3.62949 3.98563 4.39104 4.50756 4.68067 4.78922 4.84886 4.94305 5.02037 5.06043 5.17379 5.21648 5.29921 5.32982 5.40233 5.40522 5.47879 5.50947 5.57156 5.69265 5.77643 5.82561 5.95832 6.09364 6.12807 6.18318 6.28099 6.42071 6.44917 6.46892 6.54857 6.64273 6.68113 6.69007 6.86505 6.93265 7.10144 7.26294 7.44714 7.86386 7.93893 8.52770 8.95479 9.61391 10.56338 11.31623 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003096 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.193242 B = 9042.184567 C =10098.801231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.018 3.982 4 C 0.092 3.908 5 C -0.066 4.066 6 C -0.122 4.122 7 C -0.088 4.088 8 C -0.117 4.117 9 C 0.553 3.447 10 O -0.549 6.549 11 N -0.568 5.568 12 C 0.075 3.925 13 C 0.082 3.918 14 C 0.104 3.896 15 N -0.606 5.606 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.153 3.847 25 C -0.068 4.068 26 C -0.107 4.107 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.255 0.745 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.130 0.870 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.623 1.899 -8.369 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.130 4.130 4 C -0.035 4.035 5 C -0.066 4.066 6 C -0.140 4.140 7 C -0.107 4.107 8 C -0.120 4.120 9 C 0.341 3.659 10 O -0.428 6.428 11 N -0.297 5.297 12 C -0.067 4.067 13 C -0.023 4.023 14 C -0.023 4.023 15 N -0.333 5.333 16 C -0.345 4.345 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.216 1.216 24 C 0.026 3.974 25 C -0.087 4.087 26 C -0.125 4.125 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.148 0.852 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.199 1.547 -8.955 21.241 hybrid contribution 0.031 1.018 1.768 2.041 sum -19.167 2.565 -7.187 20.631 Atomic orbital electron populations 1.22398 0.87097 1.02343 1.00562 1.61984 1.07668 1.14270 1.42666 1.22499 1.01835 0.88304 1.00330 1.21100 0.91620 0.99021 0.91798 1.19804 0.94571 0.94807 0.97467 1.20959 0.92873 0.99119 1.01094 1.21624 0.95723 0.97122 0.96203 1.19960 0.93349 0.97298 1.01370 1.18382 0.85967 0.77832 0.83719 1.90732 1.77752 1.47702 1.26641 1.47268 1.06984 1.60986 1.14501 1.22182 0.99519 0.97187 0.87846 1.22752 0.79489 0.99249 1.00842 1.22843 0.96145 0.96128 0.87171 1.45880 1.84251 1.03868 0.99302 1.18921 1.43812 0.89374 0.82413 0.90147 1.24814 1.02169 0.95828 0.97488 1.69844 1.55816 1.07178 1.23595 0.86149 0.77646 0.79124 0.83144 1.21652 1.20501 1.21583 1.22410 0.96361 0.88358 0.90256 1.21160 0.92498 0.98313 0.96762 1.20890 0.94827 0.97842 0.98975 0.95641 0.91240 0.91267 0.90565 0.91431 0.95579 0.89752 0.93698 0.85963 0.84563 0.93100 0.92498 0.86888 0.88211 0.94011 0.93971 0.93531 0.93984 0.91498 0.85224 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.73 16 2 N -0.54 -4.75 5.01 -252.73 -1.27 -6.01 16 3 C 0.02 0.15 9.13 60.06 0.55 0.70 16 4 C 0.09 0.79 5.11 -4.98 -0.03 0.76 16 5 C -0.07 -0.69 4.89 -104.53 -0.51 -1.21 16 6 C -0.12 -1.34 7.94 -39.64 -0.31 -1.66 16 7 C -0.09 -1.15 7.62 -39.19 -0.30 -1.45 16 8 C -0.12 -1.75 5.16 -104.96 -0.54 -2.30 16 9 C 0.55 10.06 7.33 -12.33 -0.09 9.97 16 10 O -0.55 -11.43 16.47 5.33 0.09 -11.34 16 11 N -0.57 -10.56 3.12 -174.66 -0.54 -11.10 16 12 C 0.07 1.33 8.10 59.85 0.49 1.81 16 13 C 0.08 1.62 4.67 -67.67 -0.32 1.30 16 14 C 0.10 2.16 8.31 -8.50 -0.07 2.09 16 15 N -0.61 -14.71 2.46 -184.61 -0.45 -15.17 16 16 C -0.22 -5.74 10.17 -15.06 -0.15 -5.89 16 17 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -25.98 11.80 55.49 0.65 -25.32 16 20 Si 0.91 21.14 29.56 -169.99 -5.02 16.11 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.15 3.47 6.25 -8.37 -0.05 3.42 16 25 C -0.07 -0.92 9.65 -39.18 -0.38 -1.30 16 26 C -0.11 -1.19 9.68 -39.64 -0.38 -1.58 16 27 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.08 0.71 6.16 -51.93 -0.32 0.39 16 31 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.63 8.00 -51.93 -0.42 0.22 16 34 H 0.04 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.12 1.11 8.03 -52.48 -0.42 0.69 16 36 H 0.14 1.75 5.52 -52.49 -0.29 1.46 16 37 H 0.05 0.85 6.86 -51.93 -0.36 0.50 16 38 H 0.06 0.89 5.98 -51.93 -0.31 0.58 16 39 H 0.11 2.44 5.08 -51.93 -0.26 2.18 16 40 H 0.10 1.93 7.32 -51.93 -0.38 1.55 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 1.65 6.79 -51.93 -0.35 1.30 16 46 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -30.77 373.96 -9.83 -40.60 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.30 Total: 1.43 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.62 Total: 5.17 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -1.61 Total: -57.61 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.77 -9.83 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044053482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.102 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds