Wall clock time and date at job start Tue Mar 31 2020 11:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00102 * 2 1 4 4 C 1.46897 * 110.99843 * 123.95651 * 2 1 3 5 5 C 1.50700 * 109.47175 * 169.99801 * 4 2 1 6 6 C 1.38362 * 119.85390 * 89.99860 * 5 4 2 7 7 C 1.37960 * 120.14772 * 180.02562 * 6 5 4 8 8 C 1.39573 * 119.84736 * 0.02562 * 7 6 5 9 9 C 1.47855 * 120.14077 * 179.97438 * 8 7 6 10 10 O 1.21545 * 120.00296 * 221.41433 * 9 8 7 11 11 N 1.34777 * 119.99542 * 41.41662 * 9 8 7 12 12 C 1.46501 * 120.00401 * 355.48792 * 11 9 8 13 13 C 1.46496 * 119.99781 * 175.48167 * 11 9 8 14 14 C 1.53505 * 114.20606 * 120.00212 * 13 11 9 15 15 N 1.47065 * 87.98397 * 87.52168 * 14 13 11 16 16 C 1.36934 * 136.05476 * 207.09097 * 15 14 13 17 17 H 1.08004 * 120.00043 * 6.53374 * 16 15 14 18 18 C 1.38817 * 120.00123 * 186.53689 * 16 15 14 19 19 N 1.31616 * 119.99472 * 6.23207 * 18 16 15 20 20 Si 1.86797 * 119.99986 * 186.22881 * 18 16 15 21 21 H 1.48500 * 109.47089 * 265.00939 * 20 18 16 22 22 H 1.48495 * 109.47352 * 25.01403 * 20 18 16 23 23 H 1.48504 * 109.46857 * 145.01571 * 20 18 16 24 24 C 1.47067 * 87.88600 * 27.34195 * 15 14 13 25 25 C 1.39578 * 119.71827 * 0.26229 * 8 7 6 26 26 C 1.37959 * 119.84712 * 359.46267 * 25 8 7 27 27 H 1.09000 * 109.47116 * 296.04736 * 1 2 3 28 28 H 1.09004 * 109.46958 * 56.04441 * 1 2 3 29 29 H 1.09003 * 109.47402 * 176.04485 * 1 2 3 30 30 H 1.08999 * 109.46959 * 183.95349 * 3 2 1 31 31 H 1.08999 * 109.47075 * 303.95219 * 3 2 1 32 32 H 1.08997 * 109.47325 * 63.95350 * 3 2 1 33 33 H 1.09001 * 109.47403 * 49.99911 * 4 2 1 34 34 H 1.09001 * 109.47173 * 290.00045 * 4 2 1 35 35 H 1.08003 * 119.92642 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.07578 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46978 * 275.09481 * 12 11 9 38 38 H 1.09003 * 109.47229 * 35.08818 * 12 11 9 39 39 H 1.08996 * 109.47530 * 155.09288 * 12 11 9 40 40 H 1.08999 * 113.28571 * 346.93608 * 13 11 9 41 41 H 1.08999 * 113.46356 * 332.73828 * 14 13 11 42 42 H 1.08997 * 113.52116 * 202.31067 * 14 13 11 43 43 H 0.97002 * 119.99863 * 179.97438 * 19 18 16 44 44 H 1.08998 * 113.46263 * 87.43839 * 24 15 14 45 45 H 1.09002 * 113.46883 * 217.87570 * 24 15 14 46 46 H 1.07995 * 120.07400 * 179.72428 * 25 8 7 47 47 H 1.07999 * 119.92814 * 180.27949 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4817 -0.9526 0.9728 6 6 4.3555 -0.0159 1.4957 7 6 5.7173 -0.1804 1.3479 8 6 6.2128 -1.2946 0.6688 9 6 7.6710 -1.4770 0.5062 10 8 8.1201 -1.8692 -0.5530 11 7 8.5022 -1.2085 1.5326 12 6 7.9724 -0.6426 2.7756 13 6 9.9356 -1.4828 1.4052 14 6 10.8299 -0.2457 1.5667 15 7 10.8293 -0.4985 3.0155 16 6 10.9705 0.2576 4.1483 17 1 11.0208 1.3341 4.0763 18 6 11.0490 -0.3594 5.3894 19 7 11.1113 -1.6717 5.4690 20 14 11.0661 0.6728 6.9462 21 1 12.4701 0.9076 7.3690 22 1 10.4037 1.9756 6.6837 23 1 10.3381 -0.0445 8.0236 24 6 10.6168 -1.9218 2.7119 25 6 5.3257 -2.2327 0.1385 26 6 3.9664 -2.0591 0.2982 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0827 1.3431 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1756 34 1 1.7974 -0.2248 2.0628 35 1 3.9708 0.8460 2.0206 36 1 6.3984 0.5512 1.7568 37 1 7.9048 0.4413 2.6816 38 1 6.9810 -1.0529 2.9681 39 1 8.6368 -0.8949 3.6020 40 1 10.1809 -2.1019 0.5423 41 1 10.3368 0.6857 1.2884 42 1 11.8121 -0.3560 1.1072 43 1 11.1665 -2.1029 6.3361 44 1 11.5427 -2.4748 2.5541 45 1 9.9422 -2.4184 3.4093 46 1 5.7026 -3.0946 -0.3919 47 1 3.2789 -2.7865 -0.1076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044053482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:29 Heat of formation + Delta-G solvation = 59.312973 kcal Electronic energy + Delta-G solvation = -26683.486733 eV Core-core repulsion = 23061.431768 eV Total energy + Delta-G solvation = -3622.054965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70038 -40.34363 -39.21633 -37.75287 -35.73936 -34.17063 -32.71018 -31.98048 -29.86260 -28.45512 -28.18560 -27.73010 -26.40480 -25.35222 -23.91274 -23.62470 -22.27224 -21.49821 -20.03934 -18.84310 -18.25872 -17.55559 -16.96237 -16.79847 -16.76225 -16.38377 -16.14217 -15.79704 -15.57557 -15.27464 -15.23591 -14.75086 -14.54571 -14.43538 -13.98721 -13.95587 -13.60417 -13.28590 -13.19962 -13.15371 -13.00750 -12.78397 -12.69307 -12.62169 -12.46193 -12.39895 -12.19201 -11.99895 -11.85495 -11.74394 -11.34134 -11.08074 -10.77203 -9.91296 -9.79440 -9.54362 -9.24904 -8.93103 -7.90855 -5.23286 -0.06762 0.44112 1.48721 1.49571 1.58783 1.64543 1.97307 2.47998 2.70032 3.26012 3.30440 3.41641 3.51019 3.76031 3.82788 3.85532 4.01448 4.25510 4.32793 4.33673 4.41353 4.44318 4.48139 4.50039 4.60425 4.62790 4.69960 4.77202 4.78062 4.80552 4.87125 4.90774 5.02271 5.07079 5.07933 5.09011 5.16334 5.27320 5.32916 5.39114 5.46353 5.57657 5.68215 5.87443 5.92900 6.05531 6.11600 6.45636 6.90295 7.07071 7.59559 8.59481 9.27444 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003096 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.193242 B = 9042.184567 C =10098.801231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.558 5.558 3 C 0.018 3.982 4 C 0.093 3.907 5 C -0.057 4.057 6 C -0.117 4.117 7 C -0.092 4.092 8 C -0.142 4.142 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.573 5.573 12 C 0.089 3.911 13 C 0.100 3.900 14 C 0.109 3.891 15 N -0.624 5.624 16 C -0.221 4.221 17 H 0.085 0.915 18 C -0.058 4.058 19 N -0.951 5.951 20 Si 0.974 3.026 21 H -0.293 1.293 22 H -0.264 1.264 23 H -0.294 1.294 24 C 0.157 3.843 25 C -0.078 4.078 26 C -0.104 4.104 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.033 0.967 45 H 0.042 0.958 46 H 0.126 0.874 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.204 3.136 -8.496 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.130 4.130 4 C -0.034 4.034 5 C -0.058 4.058 6 C -0.135 4.135 7 C -0.111 4.111 8 C -0.145 4.145 9 C 0.345 3.655 10 O -0.462 6.462 11 N -0.302 5.302 12 C -0.053 4.053 13 C -0.005 4.005 14 C -0.018 4.018 15 N -0.351 5.351 16 C -0.349 4.349 17 H 0.102 0.898 18 C -0.252 4.252 19 N -0.599 5.599 20 Si 0.802 3.198 21 H -0.221 1.221 22 H -0.189 1.189 23 H -0.221 1.221 24 C 0.030 3.970 25 C -0.097 4.097 26 C -0.122 4.122 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.144 0.856 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.798 2.809 -9.102 23.788 hybrid contribution 0.741 0.641 1.725 1.984 sum -21.057 3.450 -7.377 22.577 Atomic orbital electron populations 1.22436 0.85729 1.03064 1.01098 1.61974 1.08984 1.14441 1.42761 1.22488 1.00996 0.88442 1.01066 1.21134 0.89992 1.00032 0.92257 1.20124 0.95939 0.93908 0.95794 1.21195 0.91935 0.99797 1.00578 1.21631 0.96784 0.96469 0.96168 1.19798 0.91318 0.99245 1.04122 1.18880 0.87246 0.76571 0.82839 1.90701 1.78623 1.49141 1.27741 1.47328 1.06479 1.61264 1.15093 1.22035 0.99423 0.97775 0.86069 1.22482 0.80392 0.98506 0.99170 1.22916 0.96932 0.96731 0.85189 1.46053 1.84270 1.04440 1.00342 1.19217 1.42506 0.89834 0.83305 0.89770 1.25544 1.02589 0.96774 1.00252 1.70014 1.57462 1.08746 1.23665 0.85138 0.77144 0.78187 0.79323 1.22071 1.18891 1.22072 1.22293 0.95778 0.87718 0.91193 1.21238 0.93404 0.98066 0.96946 1.21134 0.94061 0.98503 0.98496 0.95022 0.90789 0.90495 0.91888 0.90900 0.94733 0.88387 0.92737 0.83736 0.84664 0.92139 0.90407 0.90711 0.87542 0.93349 0.92726 0.94227 0.94974 0.93963 0.85631 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 127.69 1.22 1.47 16 2 N -0.56 -8.06 5.01 -953.49 -4.78 -12.84 16 3 C 0.02 0.25 9.13 127.69 1.17 1.42 16 4 C 0.09 1.27 5.11 85.56 0.44 1.71 16 5 C -0.06 -1.04 4.89 -19.81 -0.10 -1.14 16 6 C -0.12 -2.28 7.94 22.23 0.18 -2.10 16 7 C -0.09 -2.27 7.62 22.53 0.17 -2.10 16 8 C -0.14 -4.18 5.16 -20.09 -0.10 -4.28 16 9 C 0.55 20.23 7.33 86.79 0.64 20.87 16 10 O -0.58 -24.41 16.47 -3.86 -0.06 -24.48 16 11 N -0.57 -21.41 3.12 -824.79 -2.57 -23.98 16 12 C 0.09 3.16 8.10 127.77 1.04 4.19 16 13 C 0.10 4.01 4.67 45.55 0.21 4.22 16 14 C 0.11 4.49 8.31 83.18 0.69 5.18 16 15 N -0.62 -30.66 2.46 -737.97 -1.81 -32.47 16 16 C -0.22 -11.68 10.17 84.04 0.85 -10.82 16 17 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 18 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 19 N -0.95 -55.14 11.80 21.65 0.26 -54.88 16 20 Si 0.97 43.69 29.56 68.60 2.03 45.72 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 C 0.16 7.35 6.25 83.27 0.52 7.87 16 25 C -0.08 -2.01 9.65 22.53 0.22 -1.79 16 26 C -0.10 -2.08 9.68 22.23 0.22 -1.87 16 27 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.07 0.68 8.12 -2.38 -0.02 0.66 16 29 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 30 H 0.06 1.03 6.16 -2.39 -0.01 1.02 16 31 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.10 1.10 8.00 -2.39 -0.02 1.08 16 34 H 0.05 0.67 8.06 -2.39 -0.02 0.65 16 35 H 0.14 2.16 8.03 -2.91 -0.02 2.14 16 36 H 0.14 3.30 5.52 -2.91 -0.02 3.29 16 37 H 0.06 2.00 6.86 -2.38 -0.02 1.98 16 38 H 0.08 2.39 5.98 -2.39 -0.01 2.38 16 39 H 0.07 3.30 5.08 -2.39 -0.01 3.29 16 40 H 0.11 4.15 7.32 -2.39 -0.02 4.14 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.04 2.18 6.79 -2.39 -0.02 2.16 16 46 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 47 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -66.48 373.96 1.84 -64.63 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.96 Total: 18.14 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 7.82 Total: 20.16 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -8.90 Total: -124.17 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -66.48 1.84 -64.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044053482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.948 kcal (2) G-P(sol) polarization free energy of solvation -66.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds