Wall clock time and date at job start Tue Mar 31 2020 11:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34765 * 120.00465 * 2 1 4 4 O 1.21697 * 120.00474 * 180.73087 * 3 2 1 5 5 C 1.46683 * 119.99778 * 0.73327 * 3 2 1 6 6 C 1.37867 * 126.23400 * 346.89242 * 5 3 2 7 7 C 1.39833 * 107.08747 * 180.02562 * 6 5 3 8 8 C 1.35456 * 107.86417 * 359.97438 * 7 6 5 9 9 N 1.35530 * 108.87194 * 0.02562 * 8 7 6 10 10 C 1.46500 * 125.67845 * 179.97438 * 9 8 7 11 11 C 1.54264 * 110.03139 * 51.79809 * 10 9 8 12 12 C 1.54896 * 104.19534 * 217.10559 * 11 10 9 13 13 C 1.54888 * 102.74659 * 37.94144 * 12 11 10 14 14 C 1.53883 * 110.03156 * 294.62997 * 10 9 8 15 15 C 1.46504 * 119.99745 * 180.02562 * 2 1 3 16 16 C 1.53944 * 113.74439 * 38.73542 * 15 2 1 17 17 N 1.47807 * 86.04091 * 222.08707 * 16 15 2 18 18 C 1.36939 * 134.45769 * 204.64703 * 17 16 15 19 19 H 1.08001 * 119.99651 * 179.86666 * 18 17 16 20 20 C 1.38807 * 120.00035 * 359.86045 * 18 17 16 21 21 N 1.31617 * 119.99989 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00131 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46695 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46900 * 120.00506 * 22 20 18 25 25 H 1.48499 * 109.47359 * 240.00497 * 22 20 18 26 26 C 1.47581 * 91.05045 * 24.54714 * 17 16 15 27 27 H 1.08995 * 109.47416 * 83.73959 * 1 2 3 28 28 H 1.08999 * 109.47432 * 203.74628 * 1 2 3 29 29 H 1.09006 * 109.47134 * 323.74076 * 1 2 3 30 30 H 1.07999 * 126.45794 * 0.05638 * 6 5 3 31 31 H 1.08004 * 126.07040 * 179.97438 * 7 6 5 32 32 H 1.07999 * 125.56141 * 179.74310 * 8 7 6 33 33 H 1.09000 * 110.01588 * 173.24340 * 10 9 8 34 34 H 1.08998 * 110.48819 * 335.78072 * 11 10 9 35 35 H 1.08997 * 110.48485 * 98.43207 * 11 10 9 36 36 H 1.09004 * 110.75235 * 279.63269 * 12 11 10 37 37 H 1.08996 * 110.91225 * 156.32826 * 12 11 10 38 38 H 1.09002 * 110.48795 * 203.38072 * 13 12 11 39 39 H 1.09005 * 110.59813 * 80.79399 * 13 12 11 40 40 H 1.09001 * 110.03256 * 238.56963 * 14 10 9 41 41 H 1.08998 * 110.03060 * 359.95044 * 14 10 9 42 42 H 1.09001 * 112.94511 * 170.33150 * 15 2 1 43 43 H 1.09007 * 113.77165 * 336.35322 * 16 15 2 44 44 H 1.09001 * 113.77051 * 107.74078 * 16 15 2 45 45 H 0.97004 * 119.99964 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.77416 * 221.15063 * 26 17 16 47 47 H 1.09001 * 113.76856 * 89.75714 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1670 0.0000 4 8 3.3558 1.1671 -0.0134 5 6 1.4056 2.4373 0.0163 6 6 0.0575 2.6032 -0.2199 7 6 -0.2148 3.9699 -0.1047 8 6 0.9460 4.6011 0.1938 9 7 1.9383 3.6811 0.2699 10 6 3.3438 3.9633 0.5717 11 6 3.4490 4.8022 1.8621 12 6 4.6208 5.7771 1.5868 13 6 4.4264 6.1315 0.0915 14 6 3.9652 4.8085 -0.5541 15 6 2.1974 -1.2688 -0.0006 16 6 1.5554 -2.3548 -0.8828 17 7 1.8608 -3.2881 0.2219 18 6 2.0636 -4.6397 0.3072 19 1 2.2806 -5.0939 1.2627 20 6 1.9902 -5.4259 -0.8344 21 7 1.7261 -4.8723 -1.9989 22 14 2.2675 -7.2696 -0.7182 23 1 2.5459 -7.6402 0.6926 24 1 1.0525 -7.9833 -1.1866 25 1 3.4241 -7.6508 -1.5681 26 6 1.8620 -2.1786 1.1951 27 1 -0.3634 0.1121 -1.0215 28 1 -0.3634 -0.9406 0.4138 29 1 -0.3634 0.8287 0.6078 30 1 -0.6543 1.8242 -0.4501 31 1 -1.1793 4.4390 -0.2313 32 1 1.0625 5.6645 0.3420 33 1 3.8955 3.0302 0.6860 34 1 2.5254 5.3548 2.0342 35 1 3.6770 4.1630 2.7150 36 1 5.5795 5.2832 1.7452 37 1 4.5395 6.6685 2.2087 38 1 5.3676 6.4624 -0.3476 39 1 3.6616 6.8995 -0.0243 40 1 4.8190 4.2860 -0.9855 41 1 3.2213 5.0079 -1.3253 42 1 3.2669 -1.1420 -0.1691 43 1 0.4885 -2.2090 -1.0525 44 1 2.1088 -2.5604 -1.7991 45 1 1.6752 -5.4217 -2.7967 46 1 2.6598 -2.2439 1.9349 47 1 0.8855 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044106050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:26 Heat of formation + Delta-G solvation = 89.219870 kcal Electronic energy + Delta-G solvation = -27031.528061 eV Core-core repulsion = 23410.769956 eV Total energy + Delta-G solvation = -3620.758105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63559 -39.41660 -37.90320 -37.39905 -34.65385 -32.17427 -31.75553 -29.46197 -29.08445 -27.75063 -27.28497 -26.67985 -24.81286 -23.75366 -21.82985 -21.44812 -21.03768 -20.41814 -18.84721 -18.55906 -17.28010 -16.87062 -16.24853 -15.97752 -15.48641 -15.34161 -14.79358 -14.73192 -14.18282 -14.04307 -13.79231 -13.67961 -13.62494 -12.85900 -12.73392 -12.59282 -12.46150 -12.03314 -11.83682 -11.66107 -11.53266 -11.49074 -11.46439 -11.30989 -11.09995 -10.95537 -10.89011 -10.84905 -10.71492 -10.26780 -10.03661 -9.57065 -9.50429 -8.81997 -8.69910 -8.26764 -8.03618 -6.91853 -5.79371 -3.12311 1.60229 2.64304 2.77721 3.37791 3.42128 3.46248 3.47612 3.54408 4.18032 4.25902 4.45033 4.55823 4.72320 4.94697 5.02142 5.09964 5.13249 5.15120 5.19447 5.27188 5.38805 5.40402 5.44801 5.46701 5.51488 5.53140 5.55992 5.71003 5.78650 5.84017 5.89802 5.95378 5.96445 6.05863 6.07968 6.16644 6.24835 6.43985 6.57568 6.75115 6.85110 7.06329 7.19468 7.26147 7.35501 7.51667 7.76473 7.94457 8.45213 9.01613 9.67724 10.54534 11.37857 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002823 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.919061 B = 9915.179128 C =10495.759199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.582 5.582 3 C 0.581 3.419 4 O -0.558 6.558 5 C -0.040 4.040 6 C -0.162 4.162 7 C -0.212 4.212 8 C 0.009 3.991 9 N -0.401 5.401 10 C 0.113 3.887 11 C -0.133 4.133 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.132 4.132 15 C 0.092 3.908 16 C 0.157 3.843 17 N -0.606 5.606 18 C -0.222 4.222 19 H 0.082 0.918 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.109 3.891 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.130 0.870 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.254 0.746 46 H 0.047 0.953 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 23.970 5.177 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.313 5.313 3 C 0.371 3.629 4 O -0.439 6.439 5 C -0.154 4.154 6 C -0.188 4.188 7 C -0.236 4.236 8 C -0.126 4.126 9 N -0.073 5.073 10 C 0.011 3.989 11 C -0.171 4.171 12 C -0.161 4.161 13 C -0.161 4.161 14 C -0.170 4.170 15 C -0.011 4.011 16 C 0.031 3.969 17 N -0.333 5.333 18 C -0.350 4.350 19 H 0.100 0.900 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.018 4.018 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.180 0.820 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.152 23.629 5.126 24.179 hybrid contribution -0.199 -1.000 -0.071 1.023 sum -0.352 22.628 5.055 23.189 Atomic orbital electron populations 1.22514 0.79934 1.04041 1.01921 1.47675 1.07039 1.05520 1.71059 1.17094 0.86414 0.82660 0.76739 1.90709 1.13411 1.87251 1.52514 1.20196 0.93542 0.86062 1.15590 1.22200 0.93740 0.97405 1.05437 1.20839 0.97813 0.94077 1.10838 1.21804 0.87739 0.95110 1.07930 1.44169 1.07733 1.05252 1.50178 1.22604 0.79127 1.02235 0.94937 1.22781 0.99702 0.97882 0.96716 1.22473 0.98383 0.98912 0.96288 1.22369 1.01399 0.96883 0.95463 1.22528 1.01376 0.95715 0.97404 1.24096 0.98058 0.79383 0.99594 1.22680 0.96963 0.83359 0.93870 1.45704 1.81979 1.02194 1.03398 1.19037 1.41403 0.80174 0.94362 0.89988 1.24807 1.01940 0.98280 0.95361 1.69826 1.54621 1.34198 0.98014 0.86017 0.77418 0.84754 0.77386 1.20416 1.21701 1.21629 1.22979 0.98126 0.87248 0.93483 0.92053 0.90284 0.89576 0.81995 0.84356 0.82212 0.85277 0.90628 0.90616 0.90887 0.91000 0.91158 0.91509 0.90258 0.90843 0.86577 0.94882 0.90472 0.93590 0.93490 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 7.43 59.85 0.44 1.25 16 2 N -0.58 -10.00 3.09 -177.28 -0.55 -10.55 16 3 C 0.58 10.20 7.62 -12.86 -0.10 10.10 16 4 O -0.56 -11.17 14.01 5.19 0.07 -11.10 16 5 C -0.04 -0.59 6.70 -81.98 -0.55 -1.14 16 6 C -0.16 -2.02 8.69 -39.12 -0.34 -2.36 16 7 C -0.21 -2.28 10.81 -39.98 -0.43 -2.72 16 8 C 0.01 0.10 9.85 -16.91 -0.17 -0.07 16 9 N -0.40 -5.07 2.60 -104.62 -0.27 -5.34 16 10 C 0.11 1.30 3.45 -66.81 -0.23 1.07 16 11 C -0.13 -1.18 6.45 -25.07 -0.16 -1.34 16 12 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 13 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 14 C -0.13 -1.30 6.43 -25.61 -0.16 -1.46 16 15 C 0.09 1.88 4.40 -70.14 -0.31 1.57 16 16 C 0.16 3.73 6.93 -2.84 -0.02 3.71 16 17 N -0.61 -15.68 3.70 -177.87 -0.66 -16.34 16 18 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 19 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.29 11.39 55.49 0.63 -26.66 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.11 2.30 8.43 -2.97 -0.03 2.27 16 27 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 28 H 0.08 1.14 6.12 -51.93 -0.32 0.82 16 29 H 0.09 1.00 4.99 -51.93 -0.26 0.74 16 30 H 0.16 1.75 4.55 -52.49 -0.24 1.52 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.16 1.22 7.86 -52.49 -0.41 0.81 16 33 H 0.13 1.87 5.62 -51.93 -0.29 1.58 16 34 H 0.08 0.63 6.94 -51.93 -0.36 0.27 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 42 H 0.12 2.57 7.21 -51.93 -0.37 2.20 16 43 H 0.03 0.77 6.69 -51.93 -0.35 0.42 16 44 H 0.08 2.06 7.16 -51.93 -0.37 1.68 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.04 0.72 6.94 -51.93 -0.36 0.36 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -32.75 363.29 -10.03 -42.78 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.05 Total: 2.53 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.65 Total: 2.04 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.85 Total: -58.89 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.75 -10.03 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044106050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.001 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds