Wall clock time and date at job start Tue Mar 31 2020 11:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34765 * 120.00465 * 2 1 4 4 O 1.21697 * 120.00474 * 180.73087 * 3 2 1 5 5 C 1.46683 * 119.99778 * 0.73327 * 3 2 1 6 6 C 1.37867 * 126.23400 * 346.89242 * 5 3 2 7 7 C 1.39833 * 107.08747 * 180.02562 * 6 5 3 8 8 C 1.35456 * 107.86417 * 359.97438 * 7 6 5 9 9 N 1.35530 * 108.87194 * 0.02562 * 8 7 6 10 10 C 1.46500 * 125.67845 * 179.97438 * 9 8 7 11 11 C 1.54264 * 110.03139 * 51.79809 * 10 9 8 12 12 C 1.54896 * 104.19534 * 217.10559 * 11 10 9 13 13 C 1.54888 * 102.74659 * 37.94144 * 12 11 10 14 14 C 1.53883 * 110.03156 * 294.62997 * 10 9 8 15 15 C 1.46504 * 119.99745 * 180.02562 * 2 1 3 16 16 C 1.53944 * 113.74439 * 38.73542 * 15 2 1 17 17 N 1.47807 * 86.04091 * 222.08707 * 16 15 2 18 18 C 1.36939 * 134.45769 * 204.64703 * 17 16 15 19 19 H 1.08001 * 119.99651 * 179.86666 * 18 17 16 20 20 C 1.38807 * 120.00035 * 359.86045 * 18 17 16 21 21 N 1.31617 * 119.99989 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00131 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46695 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46900 * 120.00506 * 22 20 18 25 25 H 1.48499 * 109.47359 * 240.00497 * 22 20 18 26 26 C 1.47581 * 91.05045 * 24.54714 * 17 16 15 27 27 H 1.08995 * 109.47416 * 83.73959 * 1 2 3 28 28 H 1.08999 * 109.47432 * 203.74628 * 1 2 3 29 29 H 1.09006 * 109.47134 * 323.74076 * 1 2 3 30 30 H 1.07999 * 126.45794 * 0.05638 * 6 5 3 31 31 H 1.08004 * 126.07040 * 179.97438 * 7 6 5 32 32 H 1.07999 * 125.56141 * 179.74310 * 8 7 6 33 33 H 1.09000 * 110.01588 * 173.24340 * 10 9 8 34 34 H 1.08998 * 110.48819 * 335.78072 * 11 10 9 35 35 H 1.08997 * 110.48485 * 98.43207 * 11 10 9 36 36 H 1.09004 * 110.75235 * 279.63269 * 12 11 10 37 37 H 1.08996 * 110.91225 * 156.32826 * 12 11 10 38 38 H 1.09002 * 110.48795 * 203.38072 * 13 12 11 39 39 H 1.09005 * 110.59813 * 80.79399 * 13 12 11 40 40 H 1.09001 * 110.03256 * 238.56963 * 14 10 9 41 41 H 1.08998 * 110.03060 * 359.95044 * 14 10 9 42 42 H 1.09001 * 112.94511 * 170.33150 * 15 2 1 43 43 H 1.09007 * 113.77165 * 336.35322 * 16 15 2 44 44 H 1.09001 * 113.77051 * 107.74078 * 16 15 2 45 45 H 0.97004 * 119.99964 * 179.97438 * 21 20 18 46 46 H 1.08997 * 113.77416 * 221.15063 * 26 17 16 47 47 H 1.09001 * 113.76856 * 89.75714 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1670 0.0000 4 8 3.3558 1.1671 -0.0134 5 6 1.4056 2.4373 0.0163 6 6 0.0575 2.6032 -0.2199 7 6 -0.2148 3.9699 -0.1047 8 6 0.9460 4.6011 0.1938 9 7 1.9383 3.6811 0.2699 10 6 3.3438 3.9633 0.5717 11 6 3.4490 4.8022 1.8621 12 6 4.6208 5.7771 1.5868 13 6 4.4264 6.1315 0.0915 14 6 3.9652 4.8085 -0.5541 15 6 2.1974 -1.2688 -0.0006 16 6 1.5554 -2.3548 -0.8828 17 7 1.8608 -3.2881 0.2219 18 6 2.0636 -4.6397 0.3072 19 1 2.2806 -5.0939 1.2627 20 6 1.9902 -5.4259 -0.8344 21 7 1.7261 -4.8723 -1.9989 22 14 2.2675 -7.2696 -0.7182 23 1 2.5459 -7.6402 0.6926 24 1 1.0525 -7.9833 -1.1866 25 1 3.4241 -7.6508 -1.5681 26 6 1.8620 -2.1786 1.1951 27 1 -0.3634 0.1121 -1.0215 28 1 -0.3634 -0.9406 0.4138 29 1 -0.3634 0.8287 0.6078 30 1 -0.6543 1.8242 -0.4501 31 1 -1.1793 4.4390 -0.2313 32 1 1.0625 5.6645 0.3420 33 1 3.8955 3.0302 0.6860 34 1 2.5254 5.3548 2.0342 35 1 3.6770 4.1630 2.7150 36 1 5.5795 5.2832 1.7452 37 1 4.5395 6.6685 2.2087 38 1 5.3676 6.4624 -0.3476 39 1 3.6616 6.8995 -0.0243 40 1 4.8190 4.2860 -0.9855 41 1 3.2213 5.0079 -1.3253 42 1 3.2669 -1.1420 -0.1691 43 1 0.4885 -2.2090 -1.0525 44 1 2.1088 -2.5604 -1.7991 45 1 1.6752 -5.4217 -2.7967 46 1 2.6598 -2.2439 1.9349 47 1 0.8855 -1.9810 1.6372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044106050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:25 Heat of formation + Delta-G solvation = 70.529828 kcal Electronic energy + Delta-G solvation = -27032.338522 eV Core-core repulsion = 23410.769956 eV Total energy + Delta-G solvation = -3621.568566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61414 -40.87374 -39.06695 -38.63401 -36.11839 -34.11301 -32.72535 -30.71534 -29.78602 -29.20059 -28.56634 -27.76487 -26.66021 -25.44113 -23.17792 -22.36634 -21.79717 -21.37339 -20.46270 -19.61910 -18.84819 -18.30280 -17.70661 -17.06368 -16.81458 -16.55562 -16.44122 -15.73393 -15.56916 -15.18510 -15.13321 -14.74909 -14.51861 -14.34989 -13.89398 -13.73175 -13.57026 -13.48707 -13.31967 -13.20289 -12.84596 -12.80024 -12.59907 -12.47804 -12.14395 -12.10972 -12.07196 -12.05213 -11.94776 -11.76404 -11.58004 -11.53252 -10.90780 -10.85842 -9.71617 -9.53544 -9.09828 -8.98936 -7.94654 -5.29488 0.51967 1.44673 1.46540 1.56628 1.59848 1.88091 2.22773 2.34287 2.48028 3.23247 3.37496 3.45080 3.54991 3.56983 3.80082 3.90111 4.15156 4.22334 4.26385 4.30465 4.35092 4.40105 4.42119 4.44669 4.52223 4.61461 4.65790 4.67924 4.68748 4.80126 4.81612 4.91068 4.96741 5.10164 5.14020 5.16279 5.18764 5.20418 5.23621 5.33945 5.37780 5.43717 5.62746 5.85651 5.93655 6.10096 6.38137 6.45567 6.86458 7.10669 7.54749 8.47860 9.22588 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002823 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.919061 B = 9915.179128 C =10495.759199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.585 5.585 3 C 0.576 3.424 4 O -0.596 6.596 5 C -0.084 4.084 6 C -0.152 4.152 7 C -0.216 4.216 8 C 0.025 3.975 9 N -0.406 5.406 10 C 0.106 3.894 11 C -0.126 4.126 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.116 3.884 16 C 0.163 3.837 17 N -0.635 5.635 18 C -0.236 4.236 19 H 0.087 0.913 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.117 3.883 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.195 0.805 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.250 0.750 46 H 0.051 0.949 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 26.569 6.392 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.315 5.315 3 C 0.368 3.632 4 O -0.480 6.480 5 C -0.197 4.197 6 C -0.178 4.178 7 C -0.240 4.240 8 C -0.110 4.110 9 N -0.078 5.078 10 C 0.004 3.996 11 C -0.164 4.164 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.168 4.168 15 C 0.011 3.989 16 C 0.037 3.963 17 N -0.362 5.362 18 C -0.364 4.364 19 H 0.105 0.895 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.811 3.189 23 H -0.189 1.189 24 H -0.216 1.216 25 H -0.220 1.220 26 C -0.009 4.009 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.193 0.807 31 H 0.186 0.814 32 H 0.212 0.788 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.708 26.253 6.372 27.069 hybrid contribution 0.260 -1.687 -0.444 1.764 sum -1.449 24.565 5.928 25.312 Atomic orbital electron populations 1.22735 0.77580 1.04778 1.03264 1.47594 1.08325 1.04279 1.71288 1.17574 0.86169 0.83684 0.75798 1.90690 1.15185 1.87870 1.54235 1.19914 0.94433 0.85629 1.19702 1.22469 0.92747 0.98916 1.03661 1.21222 0.99175 0.93182 1.10382 1.22470 0.86942 0.96290 1.05331 1.44327 1.08391 1.05020 1.50103 1.22604 0.78694 1.01171 0.97080 1.22755 1.01152 0.97729 0.94775 1.22476 0.97277 0.99155 0.96614 1.22354 1.02346 0.95469 0.95038 1.22491 1.00498 0.96890 0.96878 1.23355 0.96786 0.80630 0.98086 1.22528 0.96905 0.84403 0.92509 1.46000 1.82348 1.02441 1.05429 1.19429 1.40731 0.81577 0.94654 0.89527 1.25684 1.02327 1.02808 0.95058 1.70015 1.56025 1.35550 0.98504 0.84943 0.76861 0.79223 0.77864 1.18852 1.21567 1.21962 1.23063 0.99306 0.85422 0.93146 0.90820 0.90895 0.86932 0.80673 0.81442 0.78760 0.89191 0.89237 0.91622 0.91449 0.88728 0.90252 0.89684 0.91938 0.91328 0.88998 0.94142 0.94296 0.94096 0.93079 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.51 7.43 127.77 0.95 2.46 16 2 N -0.58 -20.42 3.09 -833.03 -2.58 -22.99 16 3 C 0.58 20.84 7.62 86.45 0.66 21.50 16 4 O -0.60 -25.48 14.01 -4.34 -0.06 -25.54 16 5 C -0.08 -2.43 6.70 40.35 0.27 -2.16 16 6 C -0.15 -3.42 8.69 22.57 0.20 -3.23 16 7 C -0.22 -3.86 10.81 22.01 0.24 -3.62 16 8 C 0.03 0.44 9.85 83.48 0.82 1.27 16 9 N -0.41 -9.78 2.60 -484.91 -1.26 -11.04 16 10 C 0.11 2.45 3.45 45.72 0.16 2.61 16 11 C -0.13 -2.05 6.45 31.67 0.20 -1.85 16 12 C -0.12 -1.40 6.91 31.89 0.22 -1.18 16 13 C -0.11 -1.37 6.83 31.67 0.22 -1.15 16 14 C -0.13 -2.48 6.43 31.32 0.20 -2.28 16 15 C 0.12 4.93 4.40 46.75 0.21 5.14 16 16 C 0.16 8.01 6.93 86.44 0.60 8.61 16 17 N -0.64 -33.63 3.70 -716.66 -2.65 -36.28 16 18 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 19 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 20 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 21 N -0.95 -58.25 11.39 21.65 0.25 -58.00 16 22 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C 0.12 4.96 8.43 86.49 0.73 5.69 16 27 H 0.07 1.76 7.53 -2.39 -0.02 1.74 16 28 H 0.07 2.02 6.12 -2.39 -0.01 2.00 16 29 H 0.11 2.37 4.99 -2.38 -0.01 2.36 16 30 H 0.18 3.31 4.55 -2.91 -0.01 3.30 16 31 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.20 1.98 7.86 -2.91 -0.02 1.96 16 33 H 0.09 2.81 5.62 -2.39 -0.01 2.80 16 34 H 0.09 1.20 6.94 -2.39 -0.02 1.19 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.36 7.68 -2.39 -0.02 1.34 16 42 H 0.09 4.35 7.21 -2.39 -0.02 4.33 16 43 H 0.04 1.92 6.69 -2.38 -0.02 1.91 16 44 H 0.04 2.20 7.16 -2.39 -0.02 2.18 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 2.33 6.94 -2.39 -0.02 2.32 16 Total: -1.00 -74.31 363.29 3.73 -70.58 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.97 Total: 19.10 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 7.03 Total: 15.88 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -6.24 Total: -128.32 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -74.31 3.73 -70.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044106050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.113 kcal (2) G-P(sol) polarization free energy of solvation -74.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds