Wall clock time and date at job start Tue Mar 31 2020 11:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00182 * 2 1 4 4 C 1.46897 * 110.99652 * 123.95296 * 2 1 3 5 5 C 1.50709 * 109.47460 * 66.04799 * 4 2 1 6 6 C 1.37982 * 120.07189 * 260.28238 * 5 4 2 7 7 C 1.38336 * 120.13979 * 180.25300 * 6 5 4 8 8 C 1.38373 * 120.29457 * 359.73922 * 7 6 5 9 9 C 1.37937 * 120.14833 * 359.97438 * 8 7 6 10 10 C 1.39555 * 120.07280 * 79.99783 * 5 4 2 11 11 C 1.47842 * 120.14302 * 0.02562 * 10 5 4 12 12 O 1.21549 * 120.00459 * 22.24632 * 11 10 5 13 13 N 1.34782 * 119.99583 * 202.24854 * 11 10 5 14 14 C 1.46497 * 120.00445 * 5.25824 * 13 11 10 15 15 C 1.46505 * 119.99693 * 185.25785 * 13 11 10 16 16 C 1.53942 * 113.83713 * 141.34988 * 15 13 11 17 17 N 1.47586 * 86.11619 * 90.75347 * 16 15 13 18 18 C 1.36939 * 134.49134 * 204.64331 * 17 16 15 19 19 H 1.07994 * 119.99504 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99949 * 359.97438 * 18 17 16 21 21 N 1.31616 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99696 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47292 * 90.00049 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99455 * 22 20 18 25 25 H 1.48501 * 109.47359 * 329.99640 * 22 20 18 26 26 C 1.47579 * 91.01415 * 24.63821 * 17 16 15 27 27 H 1.08998 * 109.47450 * 296.05024 * 1 2 3 28 28 H 1.09007 * 109.46828 * 56.04936 * 1 2 3 29 29 H 1.08998 * 109.47221 * 176.04186 * 1 2 3 30 30 H 1.09001 * 109.47377 * 183.95196 * 3 2 1 31 31 H 1.09006 * 109.47005 * 303.95223 * 3 2 1 32 32 H 1.09004 * 109.47168 * 63.95147 * 3 2 1 33 33 H 1.08998 * 109.47205 * 306.04759 * 4 2 1 34 34 H 1.09007 * 109.47423 * 186.04588 * 4 2 1 35 35 H 1.07997 * 119.92842 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.84789 * 179.76254 * 7 6 5 37 37 H 1.08001 * 119.92602 * 180.02562 * 8 7 6 38 38 H 1.07996 * 120.07594 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.47018 * 264.00150 * 14 13 11 40 40 H 1.08999 * 109.46827 * 23.99367 * 14 13 11 41 41 H 1.08998 * 109.47059 * 143.99674 * 14 13 11 42 42 H 1.09007 * 112.94637 * 9.66738 * 15 13 11 43 43 H 1.09005 * 113.77189 * 205.05304 * 16 15 13 44 44 H 1.09002 * 113.77305 * 336.45237 * 16 15 13 45 45 H 0.97003 * 120.00241 * 180.02562 * 21 20 18 46 46 H 1.08991 * 113.77158 * 221.06106 * 26 17 16 47 47 H 1.09000 * 113.76992 * 89.65911 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.6368 -2.2205 0.9729 6 6 0.5617 -2.7494 1.6573 7 6 0.2346 -4.0856 1.5112 8 6 0.9787 -4.8990 0.6748 9 6 2.0523 -4.3814 -0.0196 10 6 2.3879 -3.0340 0.1234 11 6 3.5376 -2.4726 -0.6174 12 8 4.0851 -1.4641 -0.2165 13 7 3.9787 -3.0791 -1.7373 14 6 3.2501 -4.2260 -2.2848 15 6 5.1868 -2.5912 -2.4072 16 6 6.0818 -3.7107 -2.9690 17 7 5.3053 -3.5682 -4.2160 18 6 5.0209 -4.3957 -5.2693 19 1 4.4095 -4.0402 -6.0854 20 6 5.5184 -5.6915 -5.2879 21 7 6.2640 -6.1245 -4.2934 22 14 5.1309 -6.8201 -6.7250 23 1 6.1762 -6.6689 -7.7690 24 1 5.1014 -8.2283 -6.2546 25 1 3.8072 -6.4605 -7.2941 26 6 4.9585 -2.1756 -3.8718 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5610 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 -0.0228 -2.1199 2.3118 36 1 -0.6056 -4.4955 2.0521 37 1 0.7177 -5.9412 0.5649 38 1 2.6319 -5.0172 -0.6723 39 1 3.7101 -5.1498 -1.9339 40 1 2.2122 -4.1886 -1.9539 41 1 3.2858 -4.1930 -3.3737 42 1 5.7284 -1.8496 -1.8198 43 1 7.1295 -3.4271 -3.0690 44 1 5.9455 -4.6723 -2.4741 45 1 6.6120 -7.0299 -4.3066 46 1 3.9255 -1.9115 -4.0975 47 1 5.6763 -1.4410 -4.2369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044337022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:37 Heat of formation + Delta-G solvation = 96.076667 kcal Electronic energy + Delta-G solvation = -27809.020290 eV Core-core repulsion = 24188.559518 eV Total energy + Delta-G solvation = -3620.460772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49001 -38.77808 -37.22321 -36.98515 -34.22699 -32.18246 -31.65447 -30.81914 -27.82410 -27.52420 -26.97021 -26.19176 -24.75291 -24.03815 -22.52409 -22.41740 -21.22749 -19.85575 -18.36039 -17.10176 -16.59451 -16.24660 -15.73240 -15.54290 -15.36723 -14.90021 -14.73702 -14.57237 -14.41164 -14.01618 -13.66924 -13.49653 -12.82717 -12.77562 -12.54633 -12.47323 -12.32744 -12.31133 -11.99154 -11.77375 -11.63693 -11.48551 -11.26206 -11.22226 -11.14675 -10.89455 -10.59467 -10.47464 -10.11078 -9.75516 -9.52156 -9.20678 -8.86595 -8.77619 -8.67882 -8.24730 -7.89481 -6.86828 -5.79111 -3.11678 1.01683 1.35052 3.17469 3.36590 3.42735 3.43912 3.51183 3.87008 4.26441 4.43627 4.77025 4.78876 4.89412 5.01936 5.17171 5.18686 5.23988 5.31822 5.43098 5.46636 5.49886 5.53558 5.62878 5.64218 5.75595 5.82702 5.86425 5.96749 5.99702 6.11036 6.19008 6.24489 6.25953 6.35005 6.45364 6.51688 6.54458 6.61802 6.77016 6.90594 6.98842 7.08256 7.14196 7.20664 7.37764 7.56448 7.94343 8.06524 8.69664 9.02388 9.68324 10.57999 11.37121 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003974 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.743354 B = 7044.334256 C = 7920.741754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.032 3.968 4 C 0.077 3.923 5 C -0.025 4.025 6 C -0.132 4.132 7 C -0.101 4.101 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.108 4.108 11 C 0.562 3.438 12 O -0.542 6.542 13 N -0.571 5.571 14 C 0.066 3.934 15 C 0.092 3.908 16 C 0.153 3.847 17 N -0.608 5.608 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.919 5.919 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.106 3.894 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.031 0.969 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.155 0.845 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 7.271 12.533 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.254 5.254 3 C -0.116 4.116 4 C -0.050 4.050 5 C -0.026 4.026 6 C -0.150 4.150 7 C -0.120 4.120 8 C -0.151 4.151 9 C -0.121 4.121 10 C -0.111 4.111 11 C 0.352 3.648 12 O -0.422 6.422 13 N -0.300 5.300 14 C -0.076 4.076 15 C -0.013 4.013 16 C 0.027 3.973 17 N -0.335 5.335 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.566 5.566 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.021 4.021 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.611 7.276 12.094 18.276 hybrid contribution -0.456 -0.434 -0.260 0.681 sum -12.067 6.842 11.834 18.234 Atomic orbital electron populations 1.22447 0.88196 1.02191 0.99843 1.61824 1.06981 1.13744 1.42851 1.22320 1.01594 0.88148 0.99586 1.21488 1.04149 0.88795 0.90560 1.19784 0.93496 0.95279 0.94078 1.20973 0.97381 0.95646 1.01038 1.21249 0.99164 0.93700 0.97864 1.21143 0.96392 1.00054 0.97484 1.22415 0.97026 0.95078 0.97600 1.19798 0.97573 0.94144 0.99618 1.18149 0.83084 0.83224 0.80386 1.90562 1.59131 1.24428 1.68037 1.47251 1.26470 1.31642 1.24659 1.22471 0.94286 0.87401 1.03407 1.22882 0.86508 0.98607 0.93274 1.22631 0.92719 0.96421 0.85559 1.46145 1.57940 1.07280 1.22143 1.18996 1.26308 0.91892 0.97808 0.90372 1.24732 0.99884 0.97279 0.98204 1.69814 1.38242 1.17168 1.31349 0.86197 0.77891 0.80262 0.81873 1.21731 1.21686 1.20644 1.22994 0.98437 0.88967 0.91655 0.96174 0.91711 0.91402 0.90649 0.91727 0.96297 0.95110 0.85866 0.86194 0.86070 0.85624 0.82802 0.92240 0.91460 0.87871 0.88847 0.94586 0.90372 0.93666 0.93528 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.27 60.06 0.56 0.80 16 2 N -0.53 -7.19 4.99 -252.72 -1.26 -8.45 16 3 C 0.03 0.37 9.57 60.06 0.57 0.95 16 4 C 0.08 1.04 4.21 -4.97 -0.02 1.02 16 5 C -0.02 -0.34 4.62 -104.22 -0.48 -0.82 16 6 C -0.13 -1.48 8.70 -39.64 -0.34 -1.83 16 7 C -0.10 -1.05 10.04 -39.50 -0.40 -1.45 16 8 C -0.13 -1.50 10.03 -39.64 -0.40 -1.90 16 9 C -0.10 -1.42 7.55 -39.19 -0.30 -1.71 16 10 C -0.11 -1.67 5.55 -104.97 -0.58 -2.25 16 11 C 0.56 10.16 7.39 -12.33 -0.09 10.07 16 12 O -0.54 -10.54 13.09 5.32 0.07 -10.47 16 13 N -0.57 -10.68 3.09 -176.86 -0.55 -11.22 16 14 C 0.07 1.19 7.60 59.85 0.46 1.65 16 15 C 0.09 1.84 4.50 -70.14 -0.32 1.52 16 16 C 0.15 3.51 6.77 -2.97 -0.02 3.49 16 17 N -0.61 -14.78 2.33 -178.09 -0.41 -15.19 16 18 C -0.22 -5.90 9.89 -15.06 -0.15 -6.05 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 21 N -0.92 -25.86 11.38 55.49 0.63 -25.23 16 22 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.21 8.31 -2.98 -0.02 2.19 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.79 6.64 -51.93 -0.34 0.44 16 30 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.03 0.37 7.99 -51.93 -0.41 -0.05 16 34 H 0.12 1.95 5.42 -51.93 -0.28 1.67 16 35 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.15 2.14 4.24 -52.49 -0.22 1.92 16 39 H 0.06 1.09 7.06 -51.93 -0.37 0.73 16 40 H 0.07 1.05 4.99 -51.93 -0.26 0.79 16 41 H 0.10 2.17 5.68 -51.93 -0.30 1.88 16 42 H 0.09 1.82 7.26 -51.93 -0.38 1.45 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.96 6.79 -51.93 -0.35 1.60 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -29.94 366.68 -9.75 -39.69 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.11 Total: 3.59 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.63 Total: 5.46 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.59 Total: -60.10 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.94 -9.75 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044337022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.768 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds